Wall clock time and date at job start Tue Mar 31 2020 01:53:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31409 * 1
3 3 Si 1.86798 * 120.00032 * 2 1
4 4 H 1.48505 * 109.47245 * 270.00182 * 3 2 1
5 5 H 1.48502 * 109.47578 * 30.00446 * 3 2 1
6 6 H 1.48504 * 109.47398 * 150.00405 * 3 2 1
7 7 C 1.38951 * 119.99954 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99839 * 159.89113 * 7 2 1
9 9 N 1.37101 * 119.99981 * 339.88220 * 7 2 1
10 10 C 1.34777 * 120.00038 * 305.77928 * 9 7 2
11 11 O 1.21290 * 119.99779 * 179.97438 * 10 9 7
12 12 C 1.50693 * 120.00112 * 359.97438 * 10 9 7
13 13 H 1.09004 * 109.39773 * 39.82064 * 12 10 9
14 14 C 1.53134 * 109.39929 * 280.00445 * 12 10 9
15 15 C 1.53483 * 108.36495 * 191.89080 * 14 12 10
16 16 O 1.45427 * 108.11002 * 61.72430 * 15 14 12
17 17 C 1.34206 * 117.18748 * 313.55753 * 16 15 14
18 18 O 1.21504 * 118.46283 * 196.51439 * 17 16 15
19 19 N 1.33734 * 123.07690 * 16.79511 * 17 16 15
20 20 C 1.46501 * 119.99431 * 125.77299 * 9 7 2
21 21 C 1.54264 * 110.03359 * 61.91764 * 20 9 7
22 22 C 1.54962 * 104.16044 * 217.13438 * 21 20 9
23 23 C 1.54883 * 102.77950 * 37.88545 * 22 21 20
24 24 C 1.53870 * 110.03531 * 304.69800 * 20 9 7
25 25 H 0.97008 * 119.99629 * 355.56640 * 1 2 3
26 26 H 1.08995 * 109.69020 * 72.16402 * 14 12 10
27 27 H 1.09006 * 109.71003 * 311.62292 * 14 12 10
28 28 H 1.09006 * 109.73109 * 302.07175 * 15 14 12
29 29 H 1.09000 * 109.73174 * 181.38318 * 15 14 12
30 30 H 0.96998 * 118.51961 * 177.71291 * 19 17 16
31 31 H 1.09002 * 110.01413 * 183.31071 * 20 9 7
32 32 H 1.09003 * 110.48688 * 335.78260 * 21 20 9
33 33 H 1.09003 * 110.48548 * 98.42456 * 21 20 9
34 34 H 1.09003 * 110.71945 * 279.57399 * 22 21 20
35 35 H 1.08994 * 110.92494 * 156.29936 * 22 21 20
36 36 H 1.08998 * 110.49247 * 203.40353 * 23 22 21
37 37 H 1.09004 * 110.48554 * 80.75954 * 23 22 21
38 38 H 1.08999 * 110.03569 * 238.57428 * 24 20 9
39 39 H 1.09005 * 110.03335 * 359.97438 * 24 20 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2481 1.6177 0.0000
4 1 2.4956 2.0465 -1.4001
5 1 1.4457 2.6527 0.7001
6 1 3.5457 1.4402 0.7000
7 6 2.0088 -1.2034 -0.0005
8 1 3.0394 -1.2317 -0.3221
9 7 1.3861 -2.3546 0.4073
10 6 0.7890 -2.4065 1.6145
11 8 0.2377 -3.4249 1.9751
12 6 0.8065 -1.1993 2.5163
13 1 0.6569 -0.2995 1.9195
14 6 2.1589 -1.1170 3.2300
15 6 2.0516 -0.0738 4.3506
16 8 1.0396 -0.5247 5.2926
17 6 -0.1207 -0.9652 4.7818
18 8 -1.0806 -1.0580 5.5209
19 7 -0.2684 -1.3120 3.4987
20 6 1.3695 -3.5284 -0.4692
21 6 2.8106 -4.0120 -0.7321
22 6 2.7915 -4.4739 -2.2112
23 6 1.8728 -3.4253 -2.8858
24 6 0.7732 -3.1558 -1.8379
25 1 -0.4850 0.8376 0.0649
26 1 2.9305 -0.8166 2.5212
27 1 2.4097 -2.0887 3.6556
28 1 1.7606 0.8890 3.9305
29 1 3.0114 0.0206 4.8586
30 1 -1.1282 -1.6538 3.2074
31 1 0.7851 -4.3270 -0.0123
32 1 3.5181 -3.1939 -0.5972
33 1 3.0593 -4.8451 -0.0746
34 1 2.3653 -5.4734 -2.2976
35 1 3.7926 -4.4441 -2.6412
36 1 1.4380 -3.8305 -3.7995
37 1 2.4285 -2.5121 -3.0990
38 1 -0.1001 -3.7741 -2.0456
39 1 0.4957 -2.1017 -1.8498
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000859490092.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 01:53:59
Heat of formation + Delta-G solvation = -114.166478 kcal
Electronic energy + Delta-G solvation = -23980.514415 eV
Core-core repulsion = 20502.063481 eV
Total energy + Delta-G solvation = -3478.450934 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 282.141 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-40.58743 -39.08033 -37.02205 -36.58527 -34.69007 -34.28511 -31.70590 -31.01275
-28.04999 -27.66713 -26.11214 -24.85229 -23.46709 -20.45224 -20.19698 -19.48111
-19.42342 -17.77894 -17.23841 -16.77833 -15.83270 -15.74993 -15.24903 -14.77801
-14.63737 -14.22661 -14.15345 -13.81300 -13.72073 -13.15313 -12.76878 -12.66421
-11.99422 -11.91135 -11.56546 -11.35250 -11.30142 -11.03688 -10.94375 -10.79113
-10.60735 -10.59600 -10.44443 -10.32864 -10.04765 -10.00699 -9.78164 -9.26397
-8.95360 -8.10116 -7.53256 -6.68257 -4.53094 2.89533 3.01933 3.03898
3.10717 3.29957 3.67018 3.84967 4.02102 4.51150 4.58710 5.00373
5.09324 5.23077 5.28298 5.35170 5.46532 5.56930 5.75342 5.95652
6.04058 6.10678 6.13307 6.18881 6.20695 6.31789 6.40365 6.43303
6.54990 6.58591 6.63842 6.85165 6.95052 7.14929 7.20436 7.37853
7.76362 8.15777 8.36675 8.60903 8.65733 9.28505 9.72496 10.32785
Molecular weight = 282.14amu
Principal moments of inertia in cm(-1)
A = 0.017666 B = 0.007411 C = 0.006079
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1584.591904 B = 3777.431574 C = 4605.025903
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.848 5.848
2 C 0.047 3.953
3 Si 0.893 3.107
4 H -0.271 1.271
5 H -0.277 1.277
6 H -0.262 1.262
7 C -0.340 4.340
8 H 0.087 0.913
9 N -0.439 5.439
10 C 0.509 3.491
11 O -0.597 6.597
12 C 0.114 3.886
13 H 0.135 0.865
14 C -0.159 4.159
15 C 0.061 3.939
16 O -0.351 6.351
17 C 0.658 3.342
18 O -0.555 6.555
19 N -0.702 5.702
20 C 0.133 3.867
21 C -0.128 4.128
22 C -0.122 4.122
23 C -0.117 4.117
24 C -0.124 4.124
25 H 0.275 0.725
26 H 0.115 0.885
27 H 0.079 0.921
28 H 0.075 0.925
29 H 0.113 0.887
30 H 0.419 0.581
31 H 0.078 0.922
32 H 0.075 0.925
33 H 0.054 0.946
34 H 0.058 0.942
35 H 0.057 0.943
36 H 0.051 0.949
37 H 0.064 0.936
38 H 0.047 0.953
39 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.199 0.292 -2.674 7.686
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.483 5.483
2 C -0.160 4.160
3 Si 0.718 3.282
4 H -0.197 1.197
5 H -0.202 1.202
6 H -0.186 1.186
7 C -0.468 4.468
8 H 0.104 0.896
9 N -0.159 5.159
10 C 0.296 3.704
11 O -0.481 6.481
12 C 0.007 3.993
13 H 0.152 0.848
14 C -0.198 4.198
15 C -0.013 4.013
16 O -0.262 6.262
17 C 0.410 3.590
18 O -0.443 6.443
19 N -0.367 5.367
20 C 0.029 3.971
21 C -0.166 4.166
22 C -0.159 4.159
23 C -0.155 4.155
24 C -0.163 4.163
25 H 0.085 0.915
26 H 0.134 0.866
27 H 0.098 0.902
28 H 0.093 0.907
29 H 0.131 0.869
30 H 0.258 0.742
31 H 0.096 0.904
32 H 0.094 0.906
33 H 0.072 0.928
34 H 0.077 0.923
35 H 0.076 0.924
36 H 0.070 0.930
37 H 0.083 0.917
38 H 0.066 0.934
39 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges 6.611 -0.006 -1.906 6.880
hybrid contribution 0.085 0.795 -0.648 1.029
sum 6.696 0.789 -2.554 7.210
Atomic orbital electron populations
1.70064 1.05993 1.28827 1.43436 1.25599 0.95099 1.00208 0.95055
0.86469 0.80284 0.81936 0.79528 1.19668 1.20234 1.18605 1.19212
0.95705 0.83970 1.47875 0.89551 1.43335 1.49970 1.11096 1.11500
1.20156 0.80338 0.87552 0.82310 1.90559 1.48937 1.33148 1.75481
1.21559 0.86098 1.02287 0.89399 0.84780 1.22406 0.98514 1.00374
0.98462 1.23509 0.90670 0.97248 0.89908 1.86612 1.24696 1.77464
1.37459 1.17770 0.82161 0.77109 0.81928 1.90962 1.34091 1.60691
1.58563 1.45224 1.17036 1.67004 1.07476 1.21624 0.94924 0.89642
0.90917 1.22660 0.98375 1.00251 0.95337 1.22439 0.99041 0.98443
0.96026 1.22270 0.97235 0.98535 0.97416 1.22354 0.96565 1.03783
0.93558 0.91467 0.86632 0.90223 0.90654 0.86911 0.74235 0.90382
0.90614 0.92757 0.92307 0.92387 0.92976 0.91679 0.93404 0.88814
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.85 -19.35 11.81 55.50 0.66 -18.70 16
2 C 0.05 0.99 3.24 -17.47 -0.06 0.93 16
3 Si 0.89 16.30 29.58 -169.99 -5.03 11.27 16
4 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16
5 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16
6 H -0.26 -4.50 7.11 56.52 0.40 -4.10 16
7 C -0.34 -7.10 6.28 -14.93 -0.09 -7.20 16
8 H 0.09 1.76 6.96 -52.49 -0.37 1.40 16
9 N -0.44 -9.48 2.36 -106.55 -0.25 -9.73 16
10 C 0.51 11.61 6.32 -10.99 -0.07 11.55 16
11 O -0.60 -15.22 15.76 5.55 0.09 -15.13 16
12 C 0.11 2.31 2.67 -69.25 -0.18 2.13 16
13 H 0.14 2.84 4.02 -51.93 -0.21 2.63 16
14 C -0.16 -2.66 5.42 -26.41 -0.14 -2.81 16
15 C 0.06 0.90 7.20 37.41 0.27 1.16 16
16 O -0.35 -6.58 10.50 -39.26 -0.41 -6.99 16
17 C 0.66 14.00 8.55 53.59 0.46 14.46 16
18 O -0.56 -13.36 17.95 -19.40 -0.35 -13.71 16
19 N -0.70 -14.64 4.85 -60.48 -0.29 -14.93 16
20 C 0.13 2.64 3.29 -66.82 -0.22 2.43 16
21 C -0.13 -2.14 6.43 -25.03 -0.16 -2.30 16
22 C -0.12 -1.74 6.91 -24.70 -0.17 -1.91 16
23 C -0.12 -1.80 6.83 -25.07 -0.17 -1.98 16
24 C -0.12 -2.33 6.25 -25.62 -0.16 -2.49 16
25 H 0.27 6.06 8.31 -40.82 -0.34 5.72 16
26 H 0.12 1.79 7.46 -51.93 -0.39 1.40 16
27 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16
28 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16
29 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16
30 H 0.42 9.00 8.52 -40.82 -0.35 8.65 16
31 H 0.08 1.69 6.95 -51.93 -0.36 1.33 16
32 H 0.08 1.30 6.63 -51.93 -0.34 0.96 16
33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16
34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16
35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16
37 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16
38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16
39 H 0.09 2.04 7.19 -51.93 -0.37 1.67 16
LS Contribution 312.79 15.07 4.71 4.71
Total: -1.00 -27.30 312.79 -6.91 -34.21
By element:
Atomic # 1 Polarization: 20.34 SS G_CDS: -5.33 Total: 15.02 kcal
Atomic # 6 Polarization: 14.68 SS G_CDS: -0.70 Total: 13.98 kcal
Atomic # 7 Polarization: -43.47 SS G_CDS: 0.11 Total: -43.36 kcal
Atomic # 8 Polarization: -35.15 SS G_CDS: -0.67 Total: -35.83 kcal
Atomic # 14 Polarization: 16.30 SS G_CDS: -5.03 Total: 11.27 kcal
Total LS contribution 4.71 Total: 4.71 kcal
Total: -27.30 -6.91 -34.21 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000859490092.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -79.960 kcal
(2) G-P(sol) polarization free energy of solvation -27.301 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.261 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.206 kcal
(6) G-S(sol) free energy of system = (1) + (5) -114.166 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds