Wall clock time and date at job start Tue Mar 31 2020 01:53:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31409 * 1
3 3 Si 1.86798 * 120.00032 * 2 1
4 4 H 1.48505 * 109.47245 * 270.00182 * 3 2 1
5 5 H 1.48502 * 109.47578 * 30.00446 * 3 2 1
6 6 H 1.48504 * 109.47398 * 150.00405 * 3 2 1
7 7 C 1.38951 * 119.99954 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99839 * 159.89113 * 7 2 1
9 9 N 1.37101 * 119.99981 * 339.88220 * 7 2 1
10 10 C 1.34777 * 120.00038 * 305.77928 * 9 7 2
11 11 O 1.21290 * 119.99779 * 179.97438 * 10 9 7
12 12 C 1.50693 * 120.00112 * 359.97438 * 10 9 7
13 13 H 1.09004 * 109.39773 * 39.82064 * 12 10 9
14 14 C 1.53134 * 109.39929 * 280.00445 * 12 10 9
15 15 C 1.53483 * 108.36495 * 191.89080 * 14 12 10
16 16 O 1.45427 * 108.11002 * 61.72430 * 15 14 12
17 17 C 1.34206 * 117.18748 * 313.55753 * 16 15 14
18 18 O 1.21504 * 118.46283 * 196.51439 * 17 16 15
19 19 N 1.33734 * 123.07690 * 16.79511 * 17 16 15
20 20 C 1.46501 * 119.99431 * 125.77299 * 9 7 2
21 21 C 1.54264 * 110.03359 * 61.91764 * 20 9 7
22 22 C 1.54962 * 104.16044 * 217.13438 * 21 20 9
23 23 C 1.54883 * 102.77950 * 37.88545 * 22 21 20
24 24 C 1.53870 * 110.03531 * 304.69800 * 20 9 7
25 25 H 0.97008 * 119.99629 * 355.56640 * 1 2 3
26 26 H 1.08995 * 109.69020 * 72.16402 * 14 12 10
27 27 H 1.09006 * 109.71003 * 311.62292 * 14 12 10
28 28 H 1.09006 * 109.73109 * 302.07175 * 15 14 12
29 29 H 1.09000 * 109.73174 * 181.38318 * 15 14 12
30 30 H 0.96998 * 118.51961 * 177.71291 * 19 17 16
31 31 H 1.09002 * 110.01413 * 183.31071 * 20 9 7
32 32 H 1.09003 * 110.48688 * 335.78260 * 21 20 9
33 33 H 1.09003 * 110.48548 * 98.42456 * 21 20 9
34 34 H 1.09003 * 110.71945 * 279.57399 * 22 21 20
35 35 H 1.08994 * 110.92494 * 156.29936 * 22 21 20
36 36 H 1.08998 * 110.49247 * 203.40353 * 23 22 21
37 37 H 1.09004 * 110.48554 * 80.75954 * 23 22 21
38 38 H 1.08999 * 110.03569 * 238.57428 * 24 20 9
39 39 H 1.09005 * 110.03335 * 359.97438 * 24 20 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2481 1.6177 0.0000
4 1 2.4956 2.0465 -1.4001
5 1 1.4457 2.6527 0.7001
6 1 3.5457 1.4402 0.7000
7 6 2.0088 -1.2034 -0.0005
8 1 3.0394 -1.2317 -0.3221
9 7 1.3861 -2.3546 0.4073
10 6 0.7890 -2.4065 1.6145
11 8 0.2377 -3.4249 1.9751
12 6 0.8065 -1.1993 2.5163
13 1 0.6569 -0.2995 1.9195
14 6 2.1589 -1.1170 3.2300
15 6 2.0516 -0.0738 4.3506
16 8 1.0396 -0.5247 5.2926
17 6 -0.1207 -0.9652 4.7818
18 8 -1.0806 -1.0580 5.5209
19 7 -0.2684 -1.3120 3.4987
20 6 1.3695 -3.5284 -0.4692
21 6 2.8106 -4.0120 -0.7321
22 6 2.7915 -4.4739 -2.2112
23 6 1.8728 -3.4253 -2.8858
24 6 0.7732 -3.1558 -1.8379
25 1 -0.4850 0.8376 0.0649
26 1 2.9305 -0.8166 2.5212
27 1 2.4097 -2.0887 3.6556
28 1 1.7606 0.8890 3.9305
29 1 3.0114 0.0206 4.8586
30 1 -1.1282 -1.6538 3.2074
31 1 0.7851 -4.3270 -0.0123
32 1 3.5181 -3.1939 -0.5972
33 1 3.0593 -4.8451 -0.0746
34 1 2.3653 -5.4734 -2.2976
35 1 3.7926 -4.4441 -2.6412
36 1 1.4380 -3.8305 -3.7995
37 1 2.4285 -2.5121 -3.0990
38 1 -0.1001 -3.7741 -2.0456
39 1 0.4957 -2.1017 -1.8498
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000859490092.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 01:53:56
Heat of formation + Delta-G solvation = -131.755193 kcal
Electronic energy + Delta-G solvation = -23981.277119 eV
Core-core repulsion = 20502.063481 eV
Total energy + Delta-G solvation = -3479.213638 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 282.141 amu
Computer time = 2.10 seconds
Orbital eigenvalues (eV)
-42.17564 -40.72679 -38.56962 -38.19025 -36.38316 -35.86637 -33.36791 -32.49062
-29.43363 -29.13590 -27.65091 -26.44609 -24.98983 -22.07716 -21.50559 -20.98824
-20.95162 -19.32310 -18.87547 -18.43158 -17.44558 -17.32323 -16.83980 -16.24555
-16.16630 -15.73726 -15.61903 -15.37044 -15.20173 -14.66042 -14.30573 -14.10839
-13.50575 -13.44780 -13.14199 -12.88741 -12.71905 -12.50821 -12.47464 -12.27996
-12.03345 -11.83493 -11.81550 -11.76300 -11.63706 -11.35821 -11.29938 -10.92120
-10.66416 -9.81559 -9.22927 -8.33011 -6.23568 1.43091 1.54253 1.54403
1.63454 1.64768 2.02511 2.30889 2.49200 2.93149 2.96973 3.67403
3.75410 3.87940 3.95599 4.08558 4.15565 4.22164 4.40860 4.60475
4.65741 4.69319 4.74443 4.80265 4.82751 4.93566 5.04431 5.10143
5.11681 5.19478 5.27080 5.45268 5.49263 5.57696 5.60803 5.68744
6.10126 6.57553 6.67233 6.93264 6.98505 7.55570 8.03043 8.68607
Molecular weight = 282.14amu
Principal moments of inertia in cm(-1)
A = 0.017666 B = 0.007411 C = 0.006079
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1584.591904 B = 3777.431574 C = 4605.025903
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.881 5.881
2 C 0.019 3.981
3 Si 0.948 3.052
4 H -0.279 1.279
5 H -0.283 1.283
6 H -0.235 1.235
7 C -0.342 4.342
8 H 0.098 0.902
9 N -0.438 5.438
10 C 0.492 3.508
11 O -0.637 6.637
12 C 0.115 3.885
13 H 0.130 0.870
14 C -0.155 4.155
15 C 0.059 3.941
16 O -0.353 6.353
17 C 0.660 3.340
18 O -0.591 6.591
19 N -0.702 5.702
20 C 0.119 3.881
21 C -0.121 4.121
22 C -0.111 4.111
23 C -0.109 4.109
24 C -0.121 4.121
25 H 0.273 0.727
26 H 0.134 0.866
27 H 0.073 0.927
28 H 0.090 0.910
29 H 0.162 0.838
30 H 0.411 0.589
31 H 0.050 0.950
32 H 0.073 0.927
33 H 0.058 0.942
34 H 0.070 0.930
35 H 0.084 0.916
36 H 0.073 0.927
37 H 0.063 0.937
38 H 0.045 0.955
39 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.058 1.114 -3.402 10.676
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.518 5.518
2 C -0.185 4.185
3 Si 0.770 3.230
4 H -0.205 1.205
5 H -0.209 1.209
6 H -0.157 1.157
7 C -0.470 4.470
8 H 0.116 0.884
9 N -0.156 5.156
10 C 0.280 3.720
11 O -0.525 6.525
12 C 0.008 3.992
13 H 0.146 0.854
14 C -0.193 4.193
15 C -0.014 4.014
16 O -0.264 6.264
17 C 0.413 3.587
18 O -0.481 6.481
19 N -0.366 5.366
20 C 0.016 3.984
21 C -0.159 4.159
22 C -0.148 4.148
23 C -0.147 4.147
24 C -0.159 4.159
25 H 0.083 0.917
26 H 0.152 0.848
27 H 0.092 0.908
28 H 0.108 0.892
29 H 0.179 0.821
30 H 0.248 0.752
31 H 0.068 0.932
32 H 0.092 0.908
33 H 0.076 0.924
34 H 0.089 0.911
35 H 0.103 0.897
36 H 0.092 0.908
37 H 0.082 0.918
38 H 0.064 0.936
39 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges 9.532 0.821 -2.663 9.931
hybrid contribution -0.824 0.516 -0.517 1.101
sum 8.708 1.338 -3.180 9.367
Atomic orbital electron populations
1.70174 1.07683 1.29371 1.44528 1.26231 0.95334 1.02715 0.94180
0.85626 0.80190 0.78012 0.79128 1.20506 1.20864 1.15742 1.19465
0.96048 0.83788 1.47677 0.88447 1.43528 1.49090 1.11781 1.11215
1.20681 0.80342 0.87928 0.83008 1.90522 1.50826 1.34770 1.76384
1.21591 0.87792 1.00539 0.89242 0.85359 1.22441 0.96556 1.01059
0.99263 1.23965 0.91531 0.96685 0.89227 1.86604 1.24251 1.77102
1.38433 1.17789 0.82612 0.76759 0.81490 1.90924 1.35799 1.62126
1.59292 1.45272 1.17011 1.66625 1.07667 1.21840 0.97032 0.88619
0.90925 1.22590 0.95616 1.00224 0.97462 1.22417 1.00298 0.98401
0.93721 1.22223 0.96175 0.99100 0.97161 1.22268 0.97889 1.01426
0.94340 0.91745 0.84842 0.90814 0.89216 0.82065 0.75188 0.93154
0.90800 0.92368 0.91137 0.89698 0.90812 0.91846 0.93642 0.92157
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -40.69 11.81 21.66 0.26 -40.43 16
2 C 0.02 0.80 3.24 84.93 0.27 1.07 16
3 Si 0.95 31.69 29.58 68.60 2.03 33.71 16
4 H -0.28 -9.71 7.11 99.48 0.71 -9.00 16
5 H -0.28 -9.73 7.11 99.48 0.71 -9.02 16
6 H -0.23 -6.82 7.11 99.48 0.71 -6.11 16
7 C -0.34 -13.99 6.28 84.04 0.53 -13.46 16
8 H 0.10 3.75 6.96 -2.91 -0.02 3.73 16
9 N -0.44 -19.05 2.36 -609.39 -1.44 -20.49 16
10 C 0.49 22.95 6.32 87.65 0.55 23.50 16
11 O -0.64 -33.87 15.76 -3.06 -0.05 -33.92 16
12 C 0.12 4.67 2.67 44.37 0.12 4.79 16
13 H 0.13 5.40 4.02 -2.38 -0.01 5.39 16
14 C -0.16 -4.87 5.42 30.80 0.17 -4.71 16
15 C 0.06 1.53 7.20 72.14 0.52 2.05 16
16 O -0.35 -12.66 10.50 -51.12 -0.54 -13.19 16
17 C 0.66 28.19 8.55 129.95 1.11 29.30 16
18 O -0.59 -28.94 17.95 19.95 0.36 -28.58 16
19 N -0.70 -29.88 4.85 -577.05 -2.80 -32.68 16
20 C 0.12 4.81 3.29 45.71 0.15 4.96 16
21 C -0.12 -3.86 6.43 31.69 0.20 -3.65 16
22 C -0.11 -2.83 6.91 31.91 0.22 -2.61 16
23 C -0.11 -3.13 6.83 31.67 0.22 -2.92 16
24 C -0.12 -4.55 6.25 31.32 0.20 -4.35 16
25 H 0.27 12.19 8.31 -92.70 -0.77 11.42 16
26 H 0.13 3.71 7.46 -2.39 -0.02 3.69 16
27 H 0.07 2.42 8.10 -2.38 -0.02 2.40 16
28 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16
29 H 0.16 2.70 8.14 -2.39 -0.02 2.68 16
30 H 0.41 18.53 8.52 -92.71 -0.79 17.74 16
31 H 0.05 2.28 6.95 -2.39 -0.02 2.26 16
32 H 0.07 2.39 6.63 -2.39 -0.02 2.37 16
33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16
34 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16
35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16
36 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16
37 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16
38 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16
39 H 0.06 2.68 7.19 -2.38 -0.02 2.66 16
Total: -1.00 -61.16 312.79 2.37 -58.79
By element:
Atomic # 1 Polarization: 42.52 SS G_CDS: 0.29 Total: 42.81 kcal
Atomic # 6 Polarization: 29.72 SS G_CDS: 4.26 Total: 33.98 kcal
Atomic # 7 Polarization: -89.62 SS G_CDS: -3.98 Total: -93.60 kcal
Atomic # 8 Polarization: -75.46 SS G_CDS: -0.23 Total: -75.69 kcal
Atomic # 14 Polarization: 31.69 SS G_CDS: 2.03 Total: 33.71 kcal
Total: -61.16 2.37 -58.79 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000859490092.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -72.963 kcal
(2) G-P(sol) polarization free energy of solvation -61.162 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.125 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.792 kcal
(6) G-S(sol) free energy of system = (1) + (5) -131.755 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.10 seconds