Wall clock time and date at job start Tue Mar 31 2020 02:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00272 * 2 1 4 4 H 1.48500 * 109.46897 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46815 * 299.99613 * 3 2 1 6 6 H 1.48499 * 109.47101 * 59.99710 * 3 2 1 7 7 C 1.37885 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99841 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00038 * 0.02562 * 7 2 1 10 10 C 1.53035 * 109.45970 * 179.97438 * 9 7 2 11 11 C 1.53191 * 109.31327 * 181.38844 * 10 9 7 12 12 N 1.46926 * 108.89109 * 305.29292 * 11 10 9 13 13 C 1.34778 * 120.63336 * 233.68039 * 12 11 10 14 14 O 1.21286 * 119.99664 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00030 * 180.02562 * 13 12 11 16 16 H 1.08992 * 109.40076 * 320.18184 * 15 13 12 17 17 C 1.53136 * 109.39591 * 80.00479 * 15 13 12 18 18 C 1.53486 * 108.36269 * 168.11179 * 17 15 13 19 19 O 1.45422 * 108.10835 * 298.26649 * 18 17 15 20 20 C 1.34212 * 117.18695 * 46.44282 * 19 18 17 21 21 O 1.21506 * 118.46024 * 163.17689 * 20 19 18 22 22 N 1.33735 * 123.07372 * 343.20629 * 20 19 18 23 23 C 1.47207 * 118.55531 * 53.54119 * 12 11 10 24 24 C 1.53038 * 109.45937 * 300.06851 * 9 7 2 25 25 H 0.97003 * 119.99945 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.45705 * 60.02588 * 9 7 2 27 27 H 1.09003 * 109.49576 * 61.43512 * 10 9 7 28 28 H 1.09000 * 109.52700 * 301.35561 * 10 9 7 29 29 H 1.09002 * 109.58786 * 65.15336 * 11 10 9 30 30 H 1.08996 * 109.58870 * 185.43616 * 11 10 9 31 31 H 1.09000 * 109.68338 * 287.82702 * 17 15 13 32 32 H 1.08993 * 109.68631 * 48.39020 * 17 15 13 33 33 H 1.09004 * 109.73194 * 57.92245 * 18 17 15 34 34 H 1.08995 * 109.73123 * 178.61214 * 18 17 15 35 35 H 0.97002 * 118.51277 * 182.30848 * 22 20 19 36 36 H 1.08996 * 109.53610 * 186.67231 * 23 12 11 37 37 H 1.09002 * 109.68003 * 66.36699 * 23 12 11 38 38 H 1.09002 * 109.49557 * 298.56319 * 24 9 7 39 39 H 1.08996 * 109.50003 * 58.66216 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2456 -3.6623 0.0005 11 6 1.4765 -4.9867 -0.0345 12 7 0.5224 -5.0124 1.0825 13 6 0.5141 -6.0395 1.9551 14 8 1.2996 -6.9541 1.8226 15 6 -0.4712 -6.0516 3.0953 16 1 -0.5660 -5.0451 3.5026 17 6 -1.8352 -6.5239 2.5838 18 6 -2.7318 -6.8142 3.7953 19 8 -2.1152 -7.8801 4.5688 20 6 -0.8005 -7.7756 4.8177 21 8 -0.3220 -8.4602 5.7002 22 7 0.0074 -6.9528 4.1403 23 6 -0.4205 -3.8914 1.2284 24 6 0.3694 -2.5790 1.2490 25 1 -0.4850 0.8401 0.0004 26 1 0.6250 -2.5571 -0.8900 27 1 2.8554 -3.6194 0.9030 28 1 2.8887 -3.5917 -0.8767 29 1 0.9371 -5.0712 -0.9779 30 1 2.1752 -5.8176 0.0626 31 1 -2.2874 -5.7443 1.9708 32 1 -1.7116 -7.4311 1.9926 33 1 -2.8219 -5.9182 4.4096 34 1 -3.7184 -7.1292 3.4557 35 1 0.9539 -6.9549 4.3525 36 1 -0.9738 -3.9995 2.1613 37 1 -1.1164 -3.8855 0.3895 38 1 0.9966 -2.5462 2.1399 39 1 -0.3230 -1.7373 1.2598 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860705156.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:00 Heat of formation + Delta-G solvation = -116.982447 kcal Electronic energy + Delta-G solvation = -22978.072580 eV Core-core repulsion = 19499.499536 eV Total energy + Delta-G solvation = -3478.573044 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.36449 -39.76408 -37.29281 -37.12939 -35.47761 -33.73664 -32.05312 -31.20236 -30.30137 -27.66255 -26.06183 -24.33013 -23.10031 -22.51464 -20.58908 -20.14172 -18.78465 -18.50247 -17.69529 -17.32328 -16.42067 -16.15506 -15.54976 -15.23267 -14.92593 -14.70923 -14.64339 -13.95082 -13.77617 -13.31602 -13.03175 -12.94911 -12.64671 -12.42632 -12.24977 -11.86147 -11.77652 -11.45488 -11.05454 -10.94406 -10.73968 -10.69989 -10.52161 -10.25869 -9.99416 -9.79625 -9.33292 -9.30710 -9.04622 -8.51747 -8.25973 -6.15926 -4.21732 2.33962 2.52922 2.66408 3.10674 3.19461 3.28748 3.32632 3.33661 4.08557 4.20067 4.31387 4.48000 4.54715 4.79810 4.93435 5.12212 5.13521 5.29368 5.49500 5.61160 5.68330 5.74632 5.84963 5.97957 6.05775 6.24306 6.46875 6.62082 6.69119 6.85393 6.93289 7.07921 7.44729 7.51030 7.62216 7.75930 7.88822 7.97345 8.18949 8.26555 8.81958 9.44404 10.89797 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.029154 B = 0.004014 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.199828 B = 6973.191359 C = 7293.258509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.056 0.944 9 C 0.048 3.952 10 C -0.124 4.124 11 C 0.111 3.889 12 N -0.591 5.591 13 C 0.503 3.497 14 O -0.542 6.542 15 C 0.115 3.885 16 H 0.109 0.891 17 C -0.167 4.167 18 C 0.063 3.937 19 O -0.343 6.343 20 C 0.663 3.337 21 O -0.535 6.535 22 N -0.709 5.709 23 C 0.098 3.902 24 C -0.126 4.126 25 H 0.261 0.739 26 H 0.029 0.971 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.114 0.886 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.121 0.879 35 H 0.424 0.576 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.040 0.960 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.821 -7.810 3.206 10.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.551 4.551 8 H 0.074 0.926 9 C 0.030 3.970 10 C -0.162 4.162 11 C -0.011 4.011 12 N -0.324 5.324 13 C 0.288 3.712 14 O -0.421 6.421 15 C 0.006 3.994 16 H 0.127 0.873 17 C -0.205 4.205 18 C -0.012 4.012 19 O -0.255 6.255 20 C 0.416 3.584 21 O -0.421 6.421 22 N -0.377 5.377 23 C -0.024 4.024 24 C -0.164 4.164 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.132 0.868 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.139 0.861 35 H 0.263 0.737 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.059 0.941 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.759 -8.684 3.586 11.575 hybrid contribution 0.826 1.376 -0.218 1.620 sum -5.933 -7.308 3.369 9.998 Atomic orbital electron populations 1.69820 1.05863 1.26496 1.50969 1.24947 0.94882 0.99115 0.94928 0.86555 0.80232 0.83724 0.77633 1.19805 1.20992 1.21017 1.21235 0.93053 0.90482 1.50301 0.92588 1.18643 0.92645 0.91845 0.93915 1.22017 0.98943 0.93976 1.01241 1.21768 0.91720 0.99994 0.87624 1.48318 1.35907 1.20437 1.27714 1.20351 0.84810 0.82581 0.83434 1.90712 1.41014 1.36127 1.74200 1.21134 0.94139 0.95481 0.88597 0.87328 1.22552 0.93443 1.05229 0.99278 1.23518 0.96842 0.89766 0.91032 1.86706 1.21254 1.47433 1.70099 1.17738 0.80283 0.79613 0.80785 1.91035 1.71802 1.46680 1.32537 1.45126 1.12858 1.41936 1.37762 1.22252 0.91778 0.87656 1.00720 1.22055 1.00185 0.94351 0.99843 0.92956 0.95336 0.92859 0.91901 0.91838 0.90210 0.86778 0.88812 0.89830 0.86105 0.73673 0.91513 0.91258 0.94071 0.87462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.88 11.30 55.43 0.63 -22.26 16 2 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 3 Si 0.89 19.87 29.54 -169.99 -5.02 14.85 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.51 -12.80 8.56 -34.44 -0.29 -13.09 16 8 H 0.06 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.05 1.04 2.06 -91.73 -0.19 0.85 16 10 C -0.12 -2.29 5.30 -26.61 -0.14 -2.43 16 11 C 0.11 1.78 6.42 -3.71 -0.02 1.76 16 12 N -0.59 -8.83 2.98 -172.54 -0.52 -9.35 16 13 C 0.50 7.35 6.86 -10.99 -0.08 7.28 16 14 O -0.54 -9.74 15.82 5.55 0.09 -9.66 16 15 C 0.12 1.28 2.69 -69.25 -0.19 1.10 16 16 H 0.11 1.04 6.53 -51.93 -0.34 0.70 16 17 C -0.17 -1.40 5.38 -26.41 -0.14 -1.55 16 18 C 0.06 0.47 7.20 37.41 0.27 0.74 16 19 O -0.34 -4.29 10.50 -39.28 -0.41 -4.70 16 20 C 0.66 9.70 8.55 53.59 0.46 10.15 16 21 O -0.54 -9.82 17.95 -19.40 -0.35 -10.17 16 22 N -0.71 -9.10 4.85 -60.49 -0.29 -9.39 16 23 C 0.10 1.39 5.79 -3.56 -0.02 1.37 16 24 C -0.13 -2.42 5.16 -26.61 -0.14 -2.56 16 25 H 0.26 6.43 8.31 -40.82 -0.34 6.09 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 1.30 7.00 -51.93 -0.36 0.94 16 31 H 0.11 0.72 7.20 -51.93 -0.37 0.34 16 32 H 0.09 0.90 8.09 -51.93 -0.42 0.48 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.42 5.59 8.52 -40.82 -0.35 5.24 16 36 H 0.07 0.73 5.04 -51.93 -0.26 0.47 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.11 2.34 6.03 -51.93 -0.31 2.02 16 LS Contribution 313.15 15.07 4.72 4.72 Total: -1.00 -30.80 313.15 -7.08 -37.88 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -5.34 Total: 2.98 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -0.58 Total: 5.10 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: -0.18 Total: -41.00 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.67 Total: -24.52 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.80 -7.08 -37.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860705156.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.105 kcal (2) G-P(sol) polarization free energy of solvation -30.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds