Wall clock time and date at job start Tue Mar 31 2020 02:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00272 * 2 1 4 4 H 1.48500 * 109.46897 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46815 * 299.99613 * 3 2 1 6 6 H 1.48499 * 109.47101 * 59.99710 * 3 2 1 7 7 C 1.37885 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99841 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00038 * 0.02562 * 7 2 1 10 10 C 1.53035 * 109.45970 * 179.97438 * 9 7 2 11 11 C 1.53191 * 109.31327 * 181.38844 * 10 9 7 12 12 N 1.46926 * 108.89109 * 305.29292 * 11 10 9 13 13 C 1.34778 * 120.63336 * 233.68039 * 12 11 10 14 14 O 1.21286 * 119.99664 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00030 * 180.02562 * 13 12 11 16 16 H 1.08992 * 109.40076 * 320.18184 * 15 13 12 17 17 C 1.53136 * 109.39591 * 80.00479 * 15 13 12 18 18 C 1.53486 * 108.36269 * 168.11179 * 17 15 13 19 19 O 1.45422 * 108.10835 * 298.26649 * 18 17 15 20 20 C 1.34212 * 117.18695 * 46.44282 * 19 18 17 21 21 O 1.21506 * 118.46024 * 163.17689 * 20 19 18 22 22 N 1.33735 * 123.07372 * 343.20629 * 20 19 18 23 23 C 1.47207 * 118.55531 * 53.54119 * 12 11 10 24 24 C 1.53038 * 109.45937 * 300.06851 * 9 7 2 25 25 H 0.97003 * 119.99945 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.45705 * 60.02588 * 9 7 2 27 27 H 1.09003 * 109.49576 * 61.43512 * 10 9 7 28 28 H 1.09000 * 109.52700 * 301.35561 * 10 9 7 29 29 H 1.09002 * 109.58786 * 65.15336 * 11 10 9 30 30 H 1.08996 * 109.58870 * 185.43616 * 11 10 9 31 31 H 1.09000 * 109.68338 * 287.82702 * 17 15 13 32 32 H 1.08993 * 109.68631 * 48.39020 * 17 15 13 33 33 H 1.09004 * 109.73194 * 57.92245 * 18 17 15 34 34 H 1.08995 * 109.73123 * 178.61214 * 18 17 15 35 35 H 0.97002 * 118.51277 * 182.30848 * 22 20 19 36 36 H 1.08996 * 109.53610 * 186.67231 * 23 12 11 37 37 H 1.09002 * 109.68003 * 66.36699 * 23 12 11 38 38 H 1.09002 * 109.49557 * 298.56319 * 24 9 7 39 39 H 1.08996 * 109.50003 * 58.66216 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2456 -3.6623 0.0005 11 6 1.4765 -4.9867 -0.0345 12 7 0.5224 -5.0124 1.0825 13 6 0.5141 -6.0395 1.9551 14 8 1.2996 -6.9541 1.8226 15 6 -0.4712 -6.0516 3.0953 16 1 -0.5660 -5.0451 3.5026 17 6 -1.8352 -6.5239 2.5838 18 6 -2.7318 -6.8142 3.7953 19 8 -2.1152 -7.8801 4.5688 20 6 -0.8005 -7.7756 4.8177 21 8 -0.3220 -8.4602 5.7002 22 7 0.0074 -6.9528 4.1403 23 6 -0.4205 -3.8914 1.2284 24 6 0.3694 -2.5790 1.2490 25 1 -0.4850 0.8401 0.0004 26 1 0.6250 -2.5571 -0.8900 27 1 2.8554 -3.6194 0.9030 28 1 2.8887 -3.5917 -0.8767 29 1 0.9371 -5.0712 -0.9779 30 1 2.1752 -5.8176 0.0626 31 1 -2.2874 -5.7443 1.9708 32 1 -1.7116 -7.4311 1.9926 33 1 -2.8219 -5.9182 4.4096 34 1 -3.7184 -7.1292 3.4557 35 1 0.9539 -6.9549 4.3525 36 1 -0.9738 -3.9995 2.1613 37 1 -1.1164 -3.8855 0.3895 38 1 0.9966 -2.5462 2.1399 39 1 -0.3230 -1.7373 1.2598 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860705156.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:00 Heat of formation + Delta-G solvation = -138.675864 kcal Electronic energy + Delta-G solvation = -22979.013277 eV Core-core repulsion = 19499.499536 eV Total energy + Delta-G solvation = -3479.513741 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.36743 -40.96052 -38.56073 -38.30605 -36.49306 -35.37207 -33.34550 -32.43629 -31.68000 -28.78665 -27.52419 -25.28075 -24.57547 -23.90593 -21.85508 -21.07177 -20.14249 -19.43135 -18.79606 -18.58691 -18.09332 -17.25553 -16.73288 -16.48141 -16.35668 -15.86942 -15.54787 -15.07689 -14.92664 -14.78954 -14.57416 -14.27596 -13.93352 -13.51894 -13.24483 -13.19859 -12.96983 -12.80309 -12.70398 -12.43801 -12.13621 -11.99138 -11.79310 -11.66560 -11.45731 -11.11381 -10.99864 -10.83116 -10.40874 -10.27721 -9.60713 -8.07362 -6.18697 1.27888 1.40593 1.45654 1.45786 1.53923 1.63763 2.00977 2.44987 2.45342 3.17474 3.20215 3.39148 3.70980 3.82534 4.07972 4.20721 4.26526 4.30063 4.37373 4.50898 4.59192 4.63643 4.71027 4.85460 4.87449 4.95121 5.00184 5.19798 5.26038 5.44481 5.52551 5.58197 5.67086 6.02497 6.17701 6.37975 6.43192 6.50947 6.89168 6.90368 7.02039 7.49074 8.95933 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.029154 B = 0.004014 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.199828 B = 6973.191359 C = 7293.258509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.024 3.976 3 Si 0.941 3.059 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.042 0.958 9 C 0.044 3.956 10 C -0.114 4.114 11 C 0.117 3.883 12 N -0.592 5.592 13 C 0.504 3.496 14 O -0.579 6.579 15 C 0.117 3.883 16 H 0.135 0.865 17 C -0.163 4.163 18 C 0.058 3.942 19 O -0.356 6.356 20 C 0.666 3.334 21 O -0.584 6.584 22 N -0.705 5.705 23 C 0.108 3.892 24 C -0.119 4.119 25 H 0.262 0.738 26 H 0.008 0.992 27 H 0.040 0.960 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.146 0.854 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.155 0.845 35 H 0.420 0.580 36 H 0.110 0.890 37 H 0.082 0.918 38 H 0.029 0.971 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.625 -7.566 3.333 11.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.176 4.176 3 Si 0.768 3.232 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.061 0.939 9 C 0.026 3.974 10 C -0.153 4.153 11 C -0.006 4.006 12 N -0.323 5.323 13 C 0.292 3.708 14 O -0.459 6.459 15 C 0.009 3.991 16 H 0.153 0.847 17 C -0.201 4.201 18 C -0.015 4.015 19 O -0.267 6.267 20 C 0.420 3.580 21 O -0.473 6.473 22 N -0.371 5.371 23 C -0.013 4.013 24 C -0.158 4.158 25 H 0.071 0.929 26 H 0.026 0.974 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.164 0.836 32 H 0.100 0.900 33 H 0.125 0.875 34 H 0.172 0.828 35 H 0.258 0.742 36 H 0.128 0.872 37 H 0.100 0.900 38 H 0.048 0.952 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.594 -8.413 3.690 12.579 hybrid contribution 1.400 1.354 -0.336 1.976 sum -7.194 -7.058 3.354 10.622 Atomic orbital electron populations 1.69904 1.06481 1.27015 1.51277 1.25507 0.95659 1.01463 0.94934 0.85767 0.79006 0.80807 0.77595 1.20110 1.20810 1.20623 1.21574 0.92802 0.92474 1.50461 0.93932 1.18627 0.93085 0.91505 0.94231 1.21856 0.98396 0.94475 1.00529 1.21604 0.92025 0.98045 0.88889 1.48308 1.35739 1.20786 1.27481 1.20907 0.84704 0.81619 0.83596 1.90705 1.42681 1.37479 1.75050 1.21367 0.94373 0.96508 0.86836 0.84739 1.22642 0.91843 1.05740 0.99868 1.24004 0.97406 0.89649 0.90420 1.86683 1.19877 1.49317 1.70822 1.17771 0.80989 0.78992 0.80289 1.90991 1.73087 1.48507 1.34725 1.45137 1.12582 1.41703 1.37702 1.22199 0.90960 0.84593 1.03593 1.21818 0.99526 0.96558 0.97877 0.92887 0.97401 0.94111 0.92134 0.90565 0.90461 0.83619 0.89955 0.87483 0.82759 0.74187 0.87218 0.90019 0.95196 0.89786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.29 11.30 21.45 0.24 -46.05 16 2 C 0.02 1.20 5.30 84.66 0.45 1.65 16 3 Si 0.94 40.71 29.54 68.60 2.03 42.74 16 4 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 6 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.53 -27.02 8.56 25.60 0.22 -26.80 16 8 H 0.04 2.20 7.74 -2.91 -0.02 2.17 16 9 C 0.04 1.90 2.06 -11.51 -0.02 1.88 16 10 C -0.11 -4.23 5.30 30.67 0.16 -4.07 16 11 C 0.12 3.62 6.42 86.36 0.55 4.17 16 12 N -0.59 -16.28 2.98 -818.19 -2.44 -18.72 16 13 C 0.50 13.63 6.86 87.66 0.60 14.23 16 14 O -0.58 -20.21 15.82 -3.05 -0.05 -20.26 16 15 C 0.12 2.23 2.69 44.37 0.12 2.35 16 16 H 0.14 1.94 6.53 -2.39 -0.02 1.92 16 17 C -0.16 -2.05 5.38 30.80 0.17 -1.88 16 18 C 0.06 0.61 7.20 72.15 0.52 1.13 16 19 O -0.36 -8.06 10.50 -51.18 -0.54 -8.60 16 20 C 0.67 18.75 8.55 129.95 1.11 19.86 16 21 O -0.58 -21.58 17.95 19.94 0.36 -21.22 16 22 N -0.71 -17.00 4.85 -577.05 -2.80 -19.80 16 23 C 0.11 2.73 5.79 86.31 0.50 3.23 16 24 C -0.12 -4.45 5.16 30.67 0.16 -4.29 16 25 H 0.26 12.78 8.31 -92.71 -0.77 12.01 16 26 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 27 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.08 2.46 7.00 -2.39 -0.02 2.45 16 31 H 0.15 0.96 7.20 -2.39 -0.02 0.94 16 32 H 0.08 1.30 8.09 -2.39 -0.02 1.28 16 33 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.15 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.42 10.83 8.52 -92.71 -0.79 10.04 16 36 H 0.11 1.85 5.04 -2.39 -0.01 1.83 16 37 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.08 3.58 6.03 -2.39 -0.01 3.57 16 Total: -1.00 -68.99 313.15 1.62 -67.37 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.29 Total: 13.09 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: 4.54 Total: 11.45 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -5.00 Total: -84.57 kcal Atomic # 8 Polarization: -49.85 SS G_CDS: -0.23 Total: -50.08 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -68.99 1.62 -67.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860705156.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.307 kcal (2) G-P(sol) polarization free energy of solvation -68.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds