Wall clock time and date at job start Tue Mar 31 2020 03:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47047 * 2 1 4 4 C 1.50693 * 109.47115 * 240.00178 * 2 1 3 5 5 H 1.08005 * 120.00292 * 240.00233 * 4 2 1 6 6 C 1.37879 * 119.99809 * 59.99620 * 4 2 1 7 7 N 1.31510 * 120.00304 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99850 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.46961 * 90.00411 * 8 6 4 10 10 H 1.48500 * 109.47355 * 210.00261 * 8 6 4 11 11 H 1.48497 * 109.47397 * 330.00361 * 8 6 4 12 12 C 1.50698 * 109.47210 * 120.00500 * 2 1 3 13 13 O 1.21281 * 120.00603 * 100.96280 * 12 2 1 14 14 N 1.34781 * 119.99466 * 280.96359 * 12 2 1 15 15 C 1.46540 * 119.40053 * 357.02426 * 14 12 2 16 16 C 1.53263 * 109.18576 * 118.31929 * 15 14 12 17 17 C 1.50872 * 109.08840 * 80.79414 * 16 15 14 18 18 O 1.21282 * 119.51102 * 107.20782 * 17 16 15 19 19 N 1.33812 * 120.97724 * 287.23222 * 17 16 15 20 20 C 1.47313 * 120.03795 * 0.10587 * 19 17 16 21 21 C 1.46029 * 119.39638 * 176.75390 * 14 12 2 22 22 C 1.53546 * 113.67250 * 111.53179 * 21 14 12 23 23 O 1.44265 * 85.34954 * 223.13963 * 22 21 14 24 24 C 1.44287 * 93.45004 * 23.70089 * 23 22 21 25 25 H 1.09006 * 109.46782 * 173.29263 * 1 2 3 26 26 H 1.09001 * 109.46916 * 293.28735 * 1 2 3 27 27 H 1.08998 * 109.46972 * 53.28891 * 1 2 3 28 28 H 0.97003 * 120.00332 * 179.97438 * 7 6 4 29 29 H 1.09009 * 109.51508 * 238.22848 * 15 14 12 30 30 H 1.08998 * 109.51706 * 358.34425 * 15 14 12 31 31 H 1.09004 * 109.53763 * 200.67943 * 16 15 14 32 32 H 1.09004 * 109.53551 * 320.83089 * 16 15 14 33 33 H 0.97007 * 119.98023 * 180.09374 * 19 17 16 34 34 H 1.09000 * 109.70070 * 189.51660 * 20 19 17 35 35 H 1.08996 * 109.69623 * 310.07042 * 20 19 17 36 36 H 1.08995 * 113.89686 * 337.24807 * 22 21 14 37 37 H 1.09004 * 113.88591 * 109.03626 * 22 21 14 38 38 H 1.09001 * 113.88898 * 222.16424 * 24 23 22 39 39 H 1.09002 * 114.00602 * 90.40707 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3225 -1.1194 -4.0080 9 1 1.3447 -2.1614 -4.4124 10 1 2.4872 -0.1400 -5.1120 11 1 3.6308 -1.7564 -3.7121 12 6 2.0324 -0.7105 1.2304 13 8 2.4229 -1.8561 1.1523 14 7 2.0477 -0.0728 2.4177 15 6 1.6349 1.3316 2.4853 16 6 0.4080 1.4527 3.3959 17 6 0.8607 1.4609 4.8351 18 8 0.8200 2.4945 5.4683 19 7 1.3069 0.3447 5.4231 20 6 1.3640 -0.9164 4.6640 21 6 2.4698 -0.7957 3.6142 22 6 3.8075 -0.3084 4.1892 23 8 4.1141 -1.7088 4.3504 24 6 3.1888 -2.1192 3.3222 25 1 -0.3633 -1.0207 -0.1200 26 1 -0.3633 0.4063 0.9440 27 1 -0.3633 0.6143 -0.8238 28 1 0.7094 1.1619 -3.4843 29 1 2.4498 1.9317 2.8905 30 1 1.3839 1.6860 1.4855 31 1 -0.1201 2.3802 3.1746 32 1 -0.2567 0.6056 3.2264 33 1 1.5931 0.3662 6.3497 34 1 1.5874 -1.7422 5.3395 35 1 0.4074 -1.0928 4.1721 36 1 4.4406 0.2015 3.4631 37 1 3.7122 0.2338 5.1300 38 1 2.6066 -3.0040 3.5798 39 1 3.6279 -2.1725 2.3259 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893787635.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:04 Heat of formation + Delta-G solvation = -55.462538 kcal Electronic energy + Delta-G solvation = -23988.098148 eV Core-core repulsion = 20512.192808 eV Total energy + Delta-G solvation = -3475.905340 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.58649 -39.44656 -38.58849 -35.85010 -34.60853 -33.85042 -31.36172 -30.61520 -28.68319 -26.62176 -25.76037 -25.27944 -24.12169 -22.99490 -20.78911 -19.44596 -18.52675 -17.33866 -17.01827 -16.71260 -16.50325 -16.16160 -15.87510 -15.03248 -14.75824 -14.70663 -14.12771 -13.88669 -13.47947 -13.21981 -12.94345 -12.69080 -12.56851 -12.22133 -12.08560 -11.79759 -11.53149 -11.30216 -11.07868 -10.88213 -10.79323 -10.72232 -10.41219 -10.10594 -9.89956 -9.72709 -9.48036 -9.07285 -8.58803 -8.35056 -8.24630 -6.14028 -4.17414 2.51076 3.06280 3.16691 3.27372 3.33635 3.35031 3.41683 3.78140 4.12608 4.38020 4.49783 4.61304 4.86613 5.01354 5.10790 5.18568 5.20169 5.29261 5.44669 5.53283 5.60679 5.73314 5.85810 5.92362 5.98068 6.12735 6.36170 6.50811 6.61552 6.66283 6.80750 6.87483 7.07957 7.27817 7.60403 7.75278 7.92356 8.09101 8.18709 8.87241 8.93775 9.48345 10.93806 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.022992 B = 0.005842 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.508464 B = 4791.545683 C = 5647.163439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.031 3.969 3 H 0.051 0.949 4 C -0.505 4.505 5 H 0.072 0.928 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.526 3.474 13 O -0.533 6.533 14 N -0.618 5.618 15 C 0.114 3.886 16 C -0.157 4.157 17 C 0.520 3.480 18 O -0.552 6.552 19 N -0.724 5.724 20 C 0.119 3.881 21 C 0.076 3.924 22 C 0.041 3.959 23 O -0.393 6.393 24 C 0.046 3.954 25 H 0.036 0.964 26 H 0.013 0.987 27 H 0.091 0.909 28 H 0.262 0.738 29 H 0.068 0.932 30 H 0.120 0.880 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.401 0.599 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.610 -0.512 12.534 12.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.010 3.990 3 H 0.068 0.932 4 C -0.543 4.543 5 H 0.090 0.910 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.319 3.681 13 O -0.409 6.409 14 N -0.354 5.354 15 C -0.009 4.009 16 C -0.198 4.198 17 C 0.307 3.693 18 O -0.430 6.430 19 N -0.377 5.377 20 C -0.007 4.007 21 C -0.011 4.011 22 C -0.038 4.038 23 O -0.312 6.312 24 C -0.030 4.030 25 H 0.055 0.945 26 H 0.032 0.968 27 H 0.110 0.890 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.138 0.862 31 H 0.129 0.871 32 H 0.115 0.885 33 H 0.238 0.762 34 H 0.120 0.880 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.392 -0.618 12.641 12.662 hybrid contribution 0.124 -0.288 -0.467 0.562 sum -0.268 -0.906 12.174 12.211 Atomic orbital electron populations 1.21751 0.95907 1.01302 0.99813 1.18940 0.94376 0.96663 0.89028 0.93153 1.21062 1.31568 1.12748 0.88922 0.90982 1.24924 0.94969 0.94965 0.99124 1.69862 1.36821 1.22847 1.23767 0.86452 0.79443 0.79274 0.82049 1.20608 1.21273 1.19771 1.22230 0.74951 0.86853 0.84045 1.90356 1.46551 1.19011 1.85016 1.48252 1.68345 1.11762 1.07065 1.21642 0.94730 0.82273 1.02268 1.22386 1.00277 1.06067 0.91112 1.20699 0.76042 0.82768 0.89747 1.90742 1.55104 1.31251 1.65857 1.46018 1.66514 1.09502 1.15649 1.21921 0.98720 0.86291 0.93738 1.24030 0.94285 0.95420 0.87357 1.24159 0.93230 0.85531 1.00841 1.89677 1.65830 1.18934 1.56776 1.25182 0.89075 0.94362 0.94348 0.94477 0.96787 0.89007 0.92813 0.91364 0.86226 0.87117 0.88533 0.76209 0.87951 0.89467 0.89883 0.89393 0.89376 0.84244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 8.57 37.16 0.32 -2.39 16 2 C 0.03 0.68 1.77 -92.92 -0.16 0.52 16 3 H 0.05 1.14 6.46 -51.93 -0.34 0.81 16 4 C -0.50 -13.20 8.34 -34.44 -0.29 -13.49 16 5 H 0.07 1.99 6.92 -52.48 -0.36 1.63 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -23.62 11.40 55.43 0.63 -22.99 16 8 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 C 0.53 10.41 6.73 -10.98 -0.07 10.33 16 13 O -0.53 -11.68 11.68 5.56 0.06 -11.61 16 14 N -0.62 -9.50 2.68 -168.12 -0.45 -9.96 16 15 C 0.11 1.55 5.28 -3.88 -0.02 1.53 16 16 C -0.16 -1.90 5.16 -27.66 -0.14 -2.04 16 17 C 0.52 6.75 7.07 -11.33 -0.08 6.67 16 18 O -0.55 -9.07 17.90 5.56 0.10 -8.97 16 19 N -0.72 -7.63 4.30 -59.94 -0.26 -7.89 16 20 C 0.12 1.25 5.84 -3.62 -0.02 1.23 16 21 C 0.08 1.03 1.08 -131.60 -0.14 0.89 16 22 C 0.04 0.54 8.30 37.39 0.31 0.85 16 23 O -0.39 -5.89 12.41 -35.23 -0.44 -6.32 16 24 C 0.05 0.69 6.79 37.33 0.25 0.95 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.01 0.23 6.52 -51.93 -0.34 -0.11 16 27 H 0.09 2.12 6.28 -51.93 -0.33 1.79 16 28 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 29 H 0.07 0.88 7.96 -51.92 -0.41 0.46 16 30 H 0.12 1.75 4.92 -51.93 -0.26 1.50 16 31 H 0.11 1.24 8.13 -51.93 -0.42 0.82 16 32 H 0.10 1.13 6.74 -51.93 -0.35 0.78 16 33 H 0.40 3.67 8.91 -40.82 -0.36 3.30 16 34 H 0.10 0.89 7.97 -51.93 -0.41 0.48 16 35 H 0.09 0.92 7.11 -51.93 -0.37 0.55 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.09 1.02 7.27 -51.93 -0.38 0.64 16 38 H 0.09 1.20 8.09 -51.93 -0.42 0.78 16 39 H 0.14 2.56 5.32 -53.69 -0.29 2.27 16 LS Contribution 304.65 15.07 4.59 4.59 Total: -1.00 -29.88 304.65 -5.94 -35.82 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -5.01 Total: 5.02 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -0.14 Total: 6.57 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: -0.08 Total: -40.83 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.27 Total: -26.91 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.88 -5.94 -35.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893787635.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.646 kcal (2) G-P(sol) polarization free energy of solvation -29.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds