Wall clock time and date at job start Tue Mar 31 2020 03:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47047 * 2 1 4 4 C 1.50693 * 109.47115 * 240.00178 * 2 1 3 5 5 H 1.08005 * 120.00292 * 240.00233 * 4 2 1 6 6 C 1.37879 * 119.99809 * 59.99620 * 4 2 1 7 7 N 1.31510 * 120.00304 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99850 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.46961 * 90.00411 * 8 6 4 10 10 H 1.48500 * 109.47355 * 210.00261 * 8 6 4 11 11 H 1.48497 * 109.47397 * 330.00361 * 8 6 4 12 12 C 1.50698 * 109.47210 * 120.00500 * 2 1 3 13 13 O 1.21281 * 120.00603 * 100.96280 * 12 2 1 14 14 N 1.34781 * 119.99466 * 280.96359 * 12 2 1 15 15 C 1.46540 * 119.40053 * 357.02426 * 14 12 2 16 16 C 1.53263 * 109.18576 * 118.31929 * 15 14 12 17 17 C 1.50872 * 109.08840 * 80.79414 * 16 15 14 18 18 O 1.21282 * 119.51102 * 107.20782 * 17 16 15 19 19 N 1.33812 * 120.97724 * 287.23222 * 17 16 15 20 20 C 1.47313 * 120.03795 * 0.10587 * 19 17 16 21 21 C 1.46029 * 119.39638 * 176.75390 * 14 12 2 22 22 C 1.53546 * 113.67250 * 111.53179 * 21 14 12 23 23 O 1.44265 * 85.34954 * 223.13963 * 22 21 14 24 24 C 1.44287 * 93.45004 * 23.70089 * 23 22 21 25 25 H 1.09006 * 109.46782 * 173.29263 * 1 2 3 26 26 H 1.09001 * 109.46916 * 293.28735 * 1 2 3 27 27 H 1.08998 * 109.46972 * 53.28891 * 1 2 3 28 28 H 0.97003 * 120.00332 * 179.97438 * 7 6 4 29 29 H 1.09009 * 109.51508 * 238.22848 * 15 14 12 30 30 H 1.08998 * 109.51706 * 358.34425 * 15 14 12 31 31 H 1.09004 * 109.53763 * 200.67943 * 16 15 14 32 32 H 1.09004 * 109.53551 * 320.83089 * 16 15 14 33 33 H 0.97007 * 119.98023 * 180.09374 * 19 17 16 34 34 H 1.09000 * 109.70070 * 189.51660 * 20 19 17 35 35 H 1.08996 * 109.69623 * 310.07042 * 20 19 17 36 36 H 1.08995 * 113.89686 * 337.24807 * 22 21 14 37 37 H 1.09004 * 113.88591 * 109.03626 * 22 21 14 38 38 H 1.09001 * 113.88898 * 222.16424 * 24 23 22 39 39 H 1.09002 * 114.00602 * 90.40707 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3225 -1.1194 -4.0080 9 1 1.3447 -2.1614 -4.4124 10 1 2.4872 -0.1400 -5.1120 11 1 3.6308 -1.7564 -3.7121 12 6 2.0324 -0.7105 1.2304 13 8 2.4229 -1.8561 1.1523 14 7 2.0477 -0.0728 2.4177 15 6 1.6349 1.3316 2.4853 16 6 0.4080 1.4527 3.3959 17 6 0.8607 1.4609 4.8351 18 8 0.8200 2.4945 5.4683 19 7 1.3069 0.3447 5.4231 20 6 1.3640 -0.9164 4.6640 21 6 2.4698 -0.7957 3.6142 22 6 3.8075 -0.3084 4.1892 23 8 4.1141 -1.7088 4.3504 24 6 3.1888 -2.1192 3.3222 25 1 -0.3633 -1.0207 -0.1200 26 1 -0.3633 0.4063 0.9440 27 1 -0.3633 0.6143 -0.8238 28 1 0.7094 1.1619 -3.4843 29 1 2.4498 1.9317 2.8905 30 1 1.3839 1.6860 1.4855 31 1 -0.1201 2.3802 3.1746 32 1 -0.2567 0.6056 3.2264 33 1 1.5931 0.3662 6.3497 34 1 1.5874 -1.7422 5.3395 35 1 0.4074 -1.0928 4.1721 36 1 4.4406 0.2015 3.4631 37 1 3.7122 0.2338 5.1300 38 1 2.6066 -3.0040 3.5798 39 1 3.6279 -2.1725 2.3259 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893787635.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:02 Heat of formation + Delta-G solvation = -77.648955 kcal Electronic energy + Delta-G solvation = -23989.060223 eV Core-core repulsion = 20512.192808 eV Total energy + Delta-G solvation = -3476.867416 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -42.76825 -40.53393 -40.02338 -37.07850 -35.93429 -35.48174 -32.69437 -32.21039 -29.86437 -27.75804 -27.18963 -26.79483 -25.28153 -24.57697 -22.07161 -20.58003 -19.83728 -18.46460 -18.32897 -17.98556 -17.94369 -17.43961 -17.14215 -16.60848 -16.21831 -15.88164 -15.43526 -15.24270 -14.90982 -14.54836 -14.30334 -13.96424 -13.72405 -13.40315 -13.22856 -13.16090 -12.95850 -12.91938 -12.65299 -12.43065 -12.35943 -12.21064 -12.00314 -11.99425 -11.08539 -10.98769 -10.84451 -10.51920 -10.50972 -9.86112 -9.54222 -8.13292 -6.21916 1.42297 1.44740 1.48431 1.54099 1.79699 1.91625 2.14655 2.46390 2.66014 3.01510 3.17973 3.47571 3.60131 3.89991 3.97676 4.04845 4.17278 4.25893 4.36358 4.43694 4.50389 4.56935 4.72127 4.79862 4.82644 4.89250 4.99461 5.01090 5.08059 5.16174 5.49711 5.62482 5.76552 5.77386 5.95282 6.11245 6.18730 6.46079 6.84672 7.13524 7.38202 7.47897 8.92510 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.022992 B = 0.005842 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.508464 B = 4791.545683 C = 5647.163439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.027 3.973 3 H 0.045 0.955 4 C -0.526 4.526 5 H 0.049 0.951 6 C 0.024 3.976 7 N -0.908 5.908 8 Si 0.949 3.051 9 H -0.277 1.277 10 H -0.279 1.279 11 H -0.278 1.278 12 C 0.527 3.473 13 O -0.560 6.560 14 N -0.607 5.607 15 C 0.113 3.887 16 C -0.151 4.151 17 C 0.523 3.477 18 O -0.587 6.587 19 N -0.709 5.709 20 C 0.126 3.874 21 C 0.077 3.923 22 C 0.043 3.957 23 O -0.399 6.399 24 C 0.044 3.956 25 H 0.021 0.979 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.264 0.736 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.122 0.878 32 H 0.106 0.894 33 H 0.412 0.588 34 H 0.131 0.869 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.166 -0.504 14.088 14.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.006 3.994 3 H 0.063 0.937 4 C -0.564 4.564 5 H 0.067 0.933 6 C -0.176 4.176 7 N -0.548 5.548 8 Si 0.775 3.225 9 H -0.203 1.203 10 H -0.204 1.204 11 H -0.203 1.203 12 C 0.320 3.680 13 O -0.439 6.439 14 N -0.342 5.342 15 C -0.010 4.010 16 C -0.191 4.191 17 C 0.311 3.689 18 O -0.467 6.467 19 N -0.361 5.361 20 C 0.001 3.999 21 C -0.010 4.010 22 C -0.035 4.035 23 O -0.318 6.318 24 C -0.032 4.032 25 H 0.040 0.960 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.127 0.873 31 H 0.140 0.860 32 H 0.124 0.876 33 H 0.250 0.750 34 H 0.149 0.851 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.129 0.871 38 H 0.123 0.877 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.945 -0.605 14.232 14.276 hybrid contribution 0.367 -0.292 -0.920 1.032 sum -0.578 -0.898 13.312 13.355 Atomic orbital electron populations 1.21540 0.94839 1.00041 1.00917 1.18848 0.95250 0.96065 0.89271 0.93728 1.21253 1.31663 1.12470 0.91014 0.93304 1.25494 0.95253 0.95648 1.01186 1.69936 1.37199 1.23396 1.24233 0.85694 0.78645 0.78520 0.79601 1.20304 1.20433 1.20319 1.21667 0.75185 0.86428 0.84762 1.90381 1.47764 1.20054 1.85705 1.48088 1.67215 1.12336 1.06516 1.21716 0.95974 0.81030 1.02279 1.22331 0.99459 1.07140 0.90210 1.20761 0.75672 0.82692 0.89796 1.90741 1.56727 1.32617 1.66659 1.45900 1.65259 1.08889 1.16055 1.21956 0.97724 0.86850 0.93360 1.24240 0.95511 0.94155 0.87059 1.24225 0.92651 0.84999 1.01647 1.89675 1.66057 1.19802 1.56298 1.24928 0.89375 0.96037 0.92898 0.95968 0.92957 0.91289 0.92695 0.90383 0.87295 0.86007 0.87587 0.74983 0.85134 0.88715 0.90958 0.87135 0.87669 0.87706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.76 8.57 71.98 0.62 -4.15 16 2 C 0.03 1.19 1.77 -12.29 -0.02 1.17 16 3 H 0.05 2.05 6.46 -2.39 -0.02 2.03 16 4 C -0.53 -28.10 8.34 25.60 0.21 -27.89 16 5 H 0.05 2.79 6.92 -2.91 -0.02 2.77 16 6 C 0.02 1.26 5.30 84.66 0.45 1.71 16 7 N -0.91 -48.26 11.40 21.45 0.24 -48.01 16 8 Si 0.95 42.92 29.54 68.60 2.03 44.95 16 9 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 C 0.53 20.82 6.73 87.66 0.59 21.41 16 13 O -0.56 -24.93 11.68 -3.03 -0.04 -24.97 16 14 N -0.61 -17.82 2.68 -816.87 -2.19 -20.01 16 15 C 0.11 2.85 5.28 86.46 0.46 3.31 16 16 C -0.15 -3.21 5.16 29.99 0.15 -3.06 16 17 C 0.52 12.04 7.07 87.86 0.62 12.66 16 18 O -0.59 -17.93 17.90 -3.04 -0.05 -17.98 16 19 N -0.71 -12.39 4.30 -462.46 -1.99 -14.38 16 20 C 0.13 2.19 5.84 86.21 0.50 2.69 16 21 C 0.08 1.90 1.08 4.00 0.00 1.91 16 22 C 0.04 1.04 8.30 72.13 0.60 1.64 16 23 O -0.40 -11.22 12.41 -148.98 -1.85 -13.07 16 24 C 0.04 1.27 6.79 72.09 0.49 1.76 16 25 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 26 H 0.05 1.70 6.52 -2.39 -0.02 1.68 16 27 H 0.07 3.18 6.28 -2.39 -0.01 3.17 16 28 H 0.26 13.42 8.31 -92.71 -0.77 12.64 16 29 H 0.08 1.86 7.96 -2.38 -0.02 1.84 16 30 H 0.11 3.06 4.92 -2.39 -0.01 3.05 16 31 H 0.12 2.39 8.13 -2.38 -0.02 2.38 16 32 H 0.11 2.10 6.74 -2.38 -0.02 2.08 16 33 H 0.41 5.94 8.91 -92.70 -0.83 5.12 16 34 H 0.13 1.67 7.97 -2.39 -0.02 1.65 16 35 H 0.09 1.61 7.11 -2.39 -0.02 1.60 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.11 2.21 7.27 -2.38 -0.02 2.19 16 38 H 0.11 2.67 8.09 -2.39 -0.02 2.65 16 39 H 0.11 3.91 5.32 -30.29 -0.16 3.75 16 Total: -1.00 -64.95 304.65 0.95 -64.00 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.12 Total: 16.30 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 4.68 Total: 13.16 kcal Atomic # 7 Polarization: -78.47 SS G_CDS: -3.94 Total: -82.40 kcal Atomic # 8 Polarization: -54.08 SS G_CDS: -1.94 Total: -56.02 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -64.95 0.95 -64.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893787635.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.644 kcal (2) G-P(sol) polarization free energy of solvation -64.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds