Wall clock time and date at job start Tue Mar 31 2020 03:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50704 * 119.99866 * 2 1 4 4 N 1.46502 * 109.47202 * 124.74196 * 3 2 1 5 5 C 1.46498 * 120.00049 * 93.52409 * 4 3 2 6 6 C 1.50696 * 109.46841 * 264.25113 * 5 4 3 7 7 H 1.07995 * 120.00489 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99761 * 179.72450 * 6 5 4 9 9 N 1.31520 * 120.00072 * 0.28002 * 8 6 5 10 10 Si 1.86799 * 120.00142 * 180.27776 * 8 6 5 11 11 H 1.48500 * 109.47280 * 60.00228 * 10 8 6 12 12 H 1.48502 * 109.47342 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47072 * 300.00382 * 10 8 6 14 14 C 1.34776 * 119.99390 * 273.51924 * 4 3 2 15 15 O 1.21277 * 120.00427 * 4.78265 * 14 4 3 16 16 C 1.50706 * 119.99837 * 184.77344 * 14 4 3 17 17 H 1.09000 * 109.41425 * 312.15792 * 16 14 4 18 18 O 1.42956 * 109.41630 * 192.35786 * 16 14 4 19 19 C 1.43232 * 112.99059 * 190.29981 * 18 16 14 20 20 C 1.53014 * 108.68201 * 68.35000 * 19 18 16 21 21 N 1.46092 * 109.92637 * 310.85014 * 20 19 18 22 22 C 1.46496 * 118.73418 * 198.37757 * 21 20 19 23 23 C 1.33871 * 122.53722 * 18.36359 * 21 20 19 24 24 O 1.21284 * 118.83344 * 178.11529 * 23 21 20 25 25 H 1.07994 * 119.99812 * 5.41863 * 1 2 3 26 26 H 1.07996 * 119.99633 * 185.41763 * 1 2 3 27 27 H 1.07998 * 120.00597 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.47303 * 4.73826 * 3 2 1 29 29 H 1.09008 * 109.47047 * 244.73743 * 3 2 1 30 30 H 1.09005 * 109.46656 * 144.25666 * 5 4 3 31 31 H 1.09000 * 109.47383 * 24.25541 * 5 4 3 32 32 H 0.97001 * 119.99699 * 179.97438 * 9 8 6 33 33 H 1.09008 * 109.58567 * 308.60081 * 19 18 16 34 34 H 1.09002 * 109.74999 * 188.19578 * 19 18 16 35 35 H 1.08999 * 109.39697 * 190.71522 * 20 19 18 36 36 H 1.09003 * 109.32526 * 70.94523 * 20 19 18 37 37 H 1.08999 * 109.47582 * 179.97438 * 22 21 20 38 38 H 1.09002 * 109.47564 * 299.98741 * 22 21 20 39 39 H 1.09007 * 109.46450 * 59.98303 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9894 1.3345 1.1350 5 6 4.3774 0.9001 0.9595 6 6 4.5081 -0.5430 1.3734 7 1 3.6437 -1.0827 1.7311 8 6 5.7300 -1.1762 1.2897 9 7 6.7827 -0.5191 0.8538 10 14 5.8906 -2.9672 1.7955 11 1 4.9959 -3.8015 0.9536 12 1 7.2965 -3.4091 1.6131 13 1 5.5069 -3.1149 3.2225 14 6 2.5641 1.7614 2.3405 15 8 1.3954 2.0387 2.5081 16 6 3.5408 1.8939 3.4806 17 1 4.1436 0.9883 3.5484 18 8 2.8225 2.0778 4.7028 19 6 3.6682 2.4455 5.7988 20 6 4.2063 3.8563 5.5509 21 7 4.7477 3.9519 4.1973 22 6 5.6643 5.0502 3.8814 23 6 4.4386 3.0746 3.2346 24 8 4.8996 3.2377 2.1247 25 1 -0.5399 0.9311 -0.0883 26 1 -0.5399 -0.9311 0.0883 27 1 1.8501 -0.9352 0.0004 28 1 1.3583 2.1318 0.0849 29 1 2.6250 1.4005 -0.9294 30 1 5.0316 1.5158 1.5768 31 1 4.6613 1.0049 -0.0877 32 1 7.6424 -0.9645 0.7953 33 1 4.4997 1.7442 5.8700 34 1 3.0963 2.4301 6.7266 35 1 4.9939 4.0752 6.2719 36 1 3.3971 4.5769 5.6689 37 1 5.9738 4.9767 2.8389 38 1 5.1602 6.0027 4.0447 39 1 6.5413 4.9881 4.5259 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908344474.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:48 Heat of formation + Delta-G solvation = -87.050189 kcal Electronic energy + Delta-G solvation = -23695.244262 eV Core-core repulsion = 20217.969179 eV Total energy + Delta-G solvation = -3477.275084 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.24122 -40.29930 -38.91834 -37.05033 -36.51711 -35.08373 -33.93343 -31.49852 -30.24007 -29.37031 -27.71491 -26.12215 -24.89150 -24.76160 -21.39394 -20.51297 -20.04222 -19.28468 -18.71510 -18.12641 -17.86611 -17.28985 -16.63839 -16.52742 -16.17807 -16.00105 -15.57660 -15.22562 -15.02744 -14.60496 -14.43287 -14.08860 -14.03617 -13.70473 -13.45169 -13.35352 -13.22429 -13.05607 -12.74429 -12.52280 -12.35992 -12.18705 -11.90449 -11.77667 -11.54504 -10.92189 -10.64131 -10.38877 -10.26147 -9.82906 -9.46612 -8.17810 -6.33637 1.11848 1.20676 1.40565 1.41669 1.45800 1.50387 1.94719 2.08061 2.39140 2.90621 3.09901 3.22882 3.51671 3.75775 4.03674 4.07848 4.16052 4.21244 4.32355 4.44737 4.46004 4.59901 4.65765 4.71228 4.83001 4.87350 4.92336 5.06623 5.20848 5.43129 5.64224 5.70783 5.75309 5.77436 5.88962 6.07732 6.15531 6.45492 6.75991 6.92356 7.14706 7.37073 8.87367 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012670 B = 0.007882 C = 0.006034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.395444 B = 3551.526300 C = 4639.462470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.178 4.178 3 C 0.145 3.855 4 N -0.577 5.577 5 C 0.233 3.767 6 C -0.549 4.549 7 H 0.053 0.947 8 C 0.020 3.980 9 N -0.918 5.918 10 Si 0.956 3.044 11 H -0.272 1.272 12 H -0.280 1.280 13 H -0.267 1.267 14 C 0.531 3.469 15 O -0.569 6.569 16 C 0.069 3.931 17 H 0.116 0.884 18 O -0.366 6.366 19 C 0.027 3.973 20 C 0.077 3.923 21 N -0.607 5.607 22 C 0.073 3.927 23 C 0.491 3.509 24 O -0.545 6.545 25 H 0.103 0.897 26 H 0.114 0.886 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.010 0.990 32 H 0.267 0.733 33 H 0.069 0.931 34 H 0.158 0.842 35 H 0.130 0.870 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.344 7.763 10.157 13.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.198 4.198 3 C 0.024 3.976 4 N -0.306 5.306 5 C 0.113 3.887 6 C -0.588 4.588 7 H 0.072 0.928 8 C -0.180 4.180 9 N -0.557 5.557 10 Si 0.781 3.219 11 H -0.197 1.197 12 H -0.205 1.205 13 H -0.192 1.192 14 C 0.317 3.683 15 O -0.450 6.450 16 C 0.004 3.996 17 H 0.133 0.867 18 O -0.284 6.284 19 C -0.049 4.049 20 C -0.045 4.045 21 N -0.341 5.341 22 C -0.069 4.069 23 C 0.277 3.723 24 O -0.424 6.424 25 H 0.121 0.879 26 H 0.132 0.868 27 H 0.118 0.882 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.028 0.972 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.175 0.825 35 H 0.147 0.853 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.687 7.980 9.639 13.046 hybrid contribution 0.748 -1.103 -0.186 1.345 sum -2.939 6.877 9.453 12.054 Atomic orbital electron populations 1.23920 0.94946 1.02704 0.98742 1.23223 0.96727 0.98332 1.01475 1.20542 0.92222 0.96095 0.88786 1.48002 1.13482 1.60863 1.08280 1.19691 0.76812 0.94602 0.97630 1.21717 0.95009 0.97247 1.44811 0.92834 1.25701 0.95167 1.02218 0.94922 1.70075 1.00643 1.38450 1.46537 0.85639 0.77240 0.79836 0.79191 1.19741 1.20545 1.19211 1.19587 0.87671 0.77411 0.83627 1.90579 1.18382 1.52950 1.83064 1.21922 0.92564 0.98119 0.86948 0.86690 1.88235 1.33731 1.90149 1.16287 1.23538 0.96240 0.94512 0.90621 1.22498 1.01123 0.98825 0.82037 1.47494 1.47031 1.27717 1.11812 1.21926 0.93398 0.88536 1.03021 1.20362 0.81875 0.84606 0.85411 1.90706 1.54373 1.73643 1.23654 0.87899 0.86792 0.88249 0.90525 0.89555 0.91771 0.97222 0.92412 0.91283 0.82473 0.85256 0.89229 0.91829 0.89632 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.34 14.31 67.78 0.97 -4.37 16 2 C -0.18 -6.89 9.82 25.65 0.25 -6.63 16 3 C 0.15 6.04 5.82 85.63 0.50 6.54 16 4 N -0.58 -27.57 2.35 -830.49 -1.95 -29.52 16 5 C 0.23 12.37 4.35 85.63 0.37 12.75 16 6 C -0.55 -30.05 8.65 25.60 0.22 -29.83 16 7 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 8 C 0.02 1.10 5.46 84.65 0.46 1.57 16 9 N -0.92 -52.90 13.29 21.45 0.28 -52.61 16 10 Si 0.96 42.66 29.54 68.60 2.03 44.68 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 13 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 14 C 0.53 25.27 6.71 87.66 0.59 25.86 16 15 O -0.57 -28.44 16.23 15.74 0.26 -28.19 16 16 C 0.07 2.88 2.54 28.99 0.07 2.96 16 17 H 0.12 5.19 6.95 -2.39 -0.02 5.18 16 18 O -0.37 -13.03 10.05 -130.21 -1.31 -14.34 16 19 C 0.03 0.58 6.89 71.99 0.50 1.08 16 20 C 0.08 1.42 6.69 86.46 0.58 2.00 16 21 N -0.61 -17.34 3.23 -849.58 -2.75 -20.09 16 22 C 0.07 1.65 10.58 127.77 1.35 3.00 16 23 C 0.49 19.59 6.90 87.69 0.61 20.19 16 24 O -0.54 -25.67 12.26 -3.04 -0.04 -25.71 16 25 H 0.10 3.09 7.86 -2.91 -0.02 3.07 16 26 H 0.11 3.15 8.06 -2.91 -0.02 3.13 16 27 H 0.10 4.13 8.06 -2.91 -0.02 4.11 16 28 H 0.08 3.05 7.27 -2.39 -0.02 3.03 16 29 H 0.09 3.40 7.81 -2.38 -0.02 3.38 16 30 H 0.06 3.62 4.03 -2.48 -0.01 3.61 16 31 H 0.01 0.55 7.80 -2.39 -0.02 0.53 16 32 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 33 H 0.07 1.47 8.10 -2.38 -0.02 1.45 16 34 H 0.16 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.13 1.32 8.13 -2.39 -0.02 1.30 16 36 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.06 1.87 6.71 -2.39 -0.02 1.85 16 38 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -74.35 326.44 4.04 -70.31 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 1.04 Total: 20.35 kcal Atomic # 6 Polarization: 28.64 SS G_CDS: 6.47 Total: 35.11 kcal Atomic # 7 Polarization: -97.81 SS G_CDS: -4.41 Total: -102.22 kcal Atomic # 8 Polarization: -67.15 SS G_CDS: -1.09 Total: -68.24 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -74.35 4.04 -70.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908344474.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.736 kcal (2) G-P(sol) polarization free energy of solvation -74.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds