Wall clock time and date at job start Tue Mar 31 2020 02:06:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31522 * 1
3 3 Si 1.86805 * 119.99667 * 2 1
4 4 H 1.48506 * 109.46845 * 270.00020 * 3 2 1
5 5 H 1.48502 * 109.47129 * 29.99754 * 3 2 1
6 6 H 1.48495 * 109.46989 * 150.00550 * 3 2 1
7 7 C 1.37872 * 120.00168 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00211 * 179.97438 * 7 2 1
9 9 C 1.50700 * 120.00253 * 359.97438 * 7 2 1
10 10 C 1.52999 * 109.47445 * 180.02562 * 9 7 2
11 11 N 1.46497 * 109.47086 * 180.02562 * 10 9 7
12 12 C 1.33801 * 124.17587 * 270.03457 * 11 10 9
13 13 O 1.21541 * 123.76706 * 359.97055 * 12 11 10
14 14 N 1.34860 * 112.50193 * 179.87592 * 12 11 10
15 15 C 1.47313 * 106.43812 * 0.14040 * 14 12 11
16 16 H 1.08998 * 110.59528 * 241.27098 * 15 14 12
17 17 C 1.52994 * 110.60132 * 118.47666 * 15 14 12
18 18 C 1.53004 * 109.47135 * 68.52973 * 17 15 14
19 19 H 1.08995 * 109.82259 * 54.43243 * 18 17 15
20 20 C 1.54383 * 109.90564 * 175.36972 * 18 17 15
21 21 C 1.55566 * 102.27674 * 140.90940 * 20 18 17
22 22 C 1.54944 * 100.82489 * 325.88222 * 21 20 18
23 23 O 1.43235 * 109.82747 * 293.54268 * 18 17 15
24 24 C 1.34763 * 124.18269 * 89.99661 * 11 10 9
25 25 O 1.21233 * 127.15533 * 0.06837 * 24 11 10
26 26 H 0.96996 * 119.99778 * 359.97438 * 1 2 3
27 27 H 1.09003 * 109.47209 * 59.99629 * 9 7 2
28 28 H 1.09003 * 109.46894 * 300.00361 * 9 7 2
29 29 H 1.08995 * 109.47350 * 59.99827 * 10 9 7
30 30 H 1.08996 * 109.46487 * 299.99741 * 10 9 7
31 31 H 0.96993 * 126.87266 * 180.13055 * 14 12 11
32 32 H 1.08996 * 109.47150 * 308.52955 * 17 15 14
33 33 H 1.08998 * 109.47387 * 188.52716 * 17 15 14
34 34 H 1.09007 * 110.84628 * 259.10369 * 20 18 17
35 35 H 1.09002 * 110.85103 * 22.51310 * 20 18 17
36 36 H 1.08997 * 111.22347 * 207.97660 * 21 20 18
37 37 H 1.09003 * 111.13190 * 83.74257 * 21 20 18
38 38 H 1.09002 * 110.30953 * 277.47426 * 22 21 20
39 39 H 1.09000 * 110.30834 * 155.40499 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4966 2.0465 -1.4001
5 1 1.4465 2.6527 0.7000
6 1 3.5467 1.4403 0.6999
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0010
9 6 1.2512 -2.4991 -0.0005
10 6 2.2455 -3.6620 -0.0005
11 7 1.5130 -4.9307 -0.0012
12 6 1.1362 -5.5816 1.1055
13 8 1.3639 -5.1866 2.2321
14 7 0.4738 -6.7241 0.8320
15 6 0.4152 -6.8308 -0.6360
16 1 -0.6193 -6.8321 -0.9794
17 6 1.1408 -8.0902 -1.1137
18 6 0.3552 -9.3282 -0.6764
19 1 -0.6744 -9.2553 -1.0265
20 6 1.0152 -10.5998 -1.2517
21 6 0.8770 -11.6061 -0.0735
22 6 1.0311 -10.6558 1.1405
23 8 0.3765 -9.4378 0.7515
24 6 1.1348 -5.5861 -1.1163
25 8 1.3300 -5.2504 -2.2647
26 1 -0.4849 0.8400 0.0004
27 1 0.6241 -2.5567 -0.8903
28 1 0.6249 -2.5571 0.8897
29 1 2.8721 -3.6043 0.8894
30 1 2.8720 -3.6042 -0.8905
31 1 0.1078 -7.3525 1.4738
32 1 2.1396 -8.1212 -0.6783
33 1 1.2186 -8.0745 -2.2008
34 1 0.4749 -10.9540 -2.1297
35 1 2.0633 -10.4189 -1.4904
36 1 1.6738 -12.3497 -0.0942
37 1 -0.1031 -12.0832 -0.0771
38 1 2.0857 -10.4701 1.3441
39 1 0.5462 -11.0822 2.0187
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000924850072.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:06:04
Heat of formation + Delta-G solvation = -102.035867 kcal
Electronic energy + Delta-G solvation = -22514.330735 eV
Core-core repulsion = 19036.405823 eV
Total energy + Delta-G solvation = -3477.924911 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 282.141 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-41.98260 -39.78415 -38.11453 -35.91848 -35.10068 -33.07460 -32.62760 -31.78229
-29.79290 -28.13521 -25.47784 -24.38908 -22.38452 -22.18713 -21.56853 -21.10035
-19.64308 -17.80399 -17.21117 -16.74270 -16.43704 -16.07285 -15.89915 -15.13742
-14.80883 -14.72906 -14.41323 -14.02265 -13.89555 -13.67906 -13.42822 -12.97143
-12.86512 -12.34797 -12.16463 -12.00558 -11.60510 -11.52897 -11.49191 -11.24287
-10.93832 -10.80670 -10.42730 -10.09362 -10.04270 -9.91582 -9.63301 -9.20897
-9.18807 -8.80265 -8.35593 -6.00408 -4.04074 1.98941 2.71592 3.34747
3.35587 3.40500 3.44462 3.51560 3.55333 4.05943 4.17962 4.39586
4.46731 4.47837 4.66015 4.73195 4.90275 4.92012 5.19203 5.28870
5.33955 5.36116 5.39310 5.40264 5.50097 5.61670 5.70247 5.84389
6.12098 6.24814 6.37509 6.66490 6.70969 7.21049 7.49424 7.62098
7.77399 7.80331 7.97292 8.32684 8.61029 9.01147 9.59713 11.11362
Molecular weight = 282.14amu
Principal moments of inertia in cm(-1)
A = 0.041542 B = 0.003503 C = 0.003371
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 673.859279 B = 7990.434838 C = 8304.557253
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.892 5.892
2 C 0.059 3.941
3 Si 0.898 3.102
4 H -0.280 1.280
5 H -0.286 1.286
6 H -0.272 1.272
7 C -0.521 4.521
8 H 0.059 0.941
9 C 0.012 3.988
10 C 0.120 3.880
11 N -0.568 5.568
12 C 0.698 3.302
13 O -0.542 6.542
14 N -0.719 5.719
15 C 0.096 3.904
16 H 0.121 0.879
17 C -0.129 4.129
18 C 0.083 3.917
19 H 0.087 0.913
20 C -0.151 4.151
21 C -0.156 4.156
22 C 0.051 3.949
23 O -0.378 6.378
24 C 0.522 3.478
25 O -0.472 6.472
26 H 0.262 0.738
27 H 0.021 0.979
28 H 0.024 0.976
29 H 0.084 0.916
30 H 0.082 0.918
31 H 0.440 0.560
32 H 0.080 0.920
33 H 0.099 0.901
34 H 0.084 0.916
35 H 0.080 0.920
36 H 0.082 0.918
37 H 0.078 0.922
38 H 0.060 0.940
39 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.331 -25.385 -2.281 25.489
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.531 5.531
2 C -0.143 4.143
3 Si 0.725 3.275
4 H -0.206 1.206
5 H -0.212 1.212
6 H -0.197 1.197
7 C -0.560 4.560
8 H 0.078 0.922
9 C -0.026 4.026
10 C 0.001 3.999
11 N -0.313 5.313
12 C 0.398 3.602
13 O -0.416 6.416
14 N -0.386 5.386
15 C -0.013 4.013
16 H 0.139 0.861
17 C -0.168 4.168
18 C 0.025 3.975
19 H 0.105 0.895
20 C -0.188 4.188
21 C -0.194 4.194
22 C -0.025 4.025
23 O -0.297 6.297
24 C 0.308 3.692
25 O -0.343 6.343
26 H 0.071 0.929
27 H 0.039 0.961
28 H 0.043 0.957
29 H 0.102 0.898
30 H 0.100 0.900
31 H 0.287 0.713
32 H 0.099 0.901
33 H 0.118 0.882
34 H 0.103 0.897
35 H 0.099 0.901
36 H 0.101 0.899
37 H 0.097 0.903
38 H 0.078 0.922
39 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges 0.399 -24.595 -2.158 24.693
hybrid contribution 0.263 0.512 0.090 0.583
sum 0.661 -24.083 -2.069 24.180
Atomic orbital electron populations
1.69978 1.06138 1.26778 1.50191 1.25001 0.94880 0.99379 0.95007
0.86502 0.79803 0.83057 0.78101 1.20586 1.21174 1.19724 1.21006
0.93090 0.90343 1.51559 0.92243 1.19410 0.94299 0.90796 0.98071
1.22176 0.95622 0.79257 1.02878 1.46698 1.52942 1.24429 1.07193
1.16094 0.78699 0.80767 0.84593 1.90984 1.59777 1.70151 1.20647
1.45697 1.61259 1.24831 1.06809 1.21955 1.02035 0.94670 0.82675
0.86115 1.22234 0.99991 0.92078 1.02514 1.22774 0.99509 0.93871
0.81347 0.89490 1.23211 1.02284 0.94385 0.98963 1.23303 1.03122
0.98337 0.94647 1.23369 0.97689 0.84049 0.97422 1.88342 1.79163
1.41272 1.20957 1.20732 0.78386 0.84871 0.85249 1.90775 1.54379
1.71049 1.18078 0.92875 0.96076 0.95743 0.89757 0.90002 0.71327
0.90133 0.88235 0.89741 0.90146 0.89937 0.90313 0.92157 0.89650
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -27.54 13.29 55.43 0.74 -26.80 16
2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16
3 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16
4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16
6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16
7 C -0.52 -15.13 9.11 -34.44 -0.31 -15.45 16
8 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16
9 C 0.01 0.33 5.30 -27.88 -0.15 0.18 16
10 C 0.12 2.67 5.64 -4.04 -0.02 2.64 16
11 N -0.57 -11.07 2.60 -120.64 -0.31 -11.38 16
12 C 0.70 13.15 8.63 -87.71 -0.76 12.39 16
13 O -0.54 -12.23 17.48 5.33 0.09 -12.14 16
14 N -0.72 -9.96 5.74 -59.10 -0.34 -10.30 16
15 C 0.10 1.17 3.65 -68.21 -0.25 0.92 16
16 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16
17 C -0.13 -1.17 4.61 -26.73 -0.12 -1.29 16
18 C 0.08 0.60 3.51 -26.00 -0.09 0.51 16
19 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16
20 C -0.15 -0.82 6.55 -24.64 -0.16 -0.98 16
21 C -0.16 -0.78 7.18 -24.34 -0.17 -0.95 16
22 C 0.05 0.34 7.77 38.18 0.30 0.64 16
23 O -0.38 -3.32 8.73 -35.23 -0.31 -3.62 16
24 C 0.52 8.94 7.65 -10.56 -0.08 8.86 16
25 O -0.47 -9.23 17.76 5.60 0.10 -9.13 16
26 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16
27 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16
28 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16
29 H 0.08 1.86 7.86 -51.93 -0.41 1.45 16
30 H 0.08 1.74 8.00 -51.93 -0.42 1.33 16
31 H 0.44 5.41 7.27 -40.82 -0.30 5.11 16
32 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16
33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16
34 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16
35 H 0.08 0.43 7.85 -51.93 -0.41 0.03 16
36 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16
37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16
38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16
39 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16
LS Contribution 328.12 15.07 4.94 4.94
Total: -1.00 -35.11 328.12 -7.75 -42.86
By element:
Atomic # 1 Polarization: 5.07 SS G_CDS: -5.72 Total: -0.65 kcal
Atomic # 6 Polarization: 11.05 SS G_CDS: -1.92 Total: 9.13 kcal
Atomic # 7 Polarization: -48.57 SS G_CDS: 0.08 Total: -48.49 kcal
Atomic # 8 Polarization: -24.77 SS G_CDS: -0.12 Total: -24.89 kcal
Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal
Total LS contribution 4.94 Total: 4.94 kcal
Total: -35.11 -7.75 -42.86 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000924850072.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -59.172 kcal
(2) G-P(sol) polarization free energy of solvation -35.113 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.285 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.864 kcal
(6) G-S(sol) free energy of system = (1) + (5) -102.036 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds