Wall clock time and date at job start Tue Mar 31 2020 02:06:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31522 * 1
3 3 Si 1.86805 * 119.99667 * 2 1
4 4 H 1.48506 * 109.46845 * 270.00020 * 3 2 1
5 5 H 1.48502 * 109.47129 * 29.99754 * 3 2 1
6 6 H 1.48495 * 109.46989 * 150.00550 * 3 2 1
7 7 C 1.37872 * 120.00168 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00211 * 179.97438 * 7 2 1
9 9 C 1.50700 * 120.00253 * 359.97438 * 7 2 1
10 10 C 1.52999 * 109.47445 * 180.02562 * 9 7 2
11 11 N 1.46497 * 109.47086 * 180.02562 * 10 9 7
12 12 C 1.33801 * 124.17587 * 270.03457 * 11 10 9
13 13 O 1.21541 * 123.76706 * 359.97055 * 12 11 10
14 14 N 1.34860 * 112.50193 * 179.87592 * 12 11 10
15 15 C 1.47313 * 106.43812 * 0.14040 * 14 12 11
16 16 H 1.08998 * 110.59528 * 241.27098 * 15 14 12
17 17 C 1.52994 * 110.60132 * 118.47666 * 15 14 12
18 18 C 1.53004 * 109.47135 * 68.52973 * 17 15 14
19 19 H 1.08995 * 109.82259 * 54.43243 * 18 17 15
20 20 C 1.54383 * 109.90564 * 175.36972 * 18 17 15
21 21 C 1.55566 * 102.27674 * 140.90940 * 20 18 17
22 22 C 1.54944 * 100.82489 * 325.88222 * 21 20 18
23 23 O 1.43235 * 109.82747 * 293.54268 * 18 17 15
24 24 C 1.34763 * 124.18269 * 89.99661 * 11 10 9
25 25 O 1.21233 * 127.15533 * 0.06837 * 24 11 10
26 26 H 0.96996 * 119.99778 * 359.97438 * 1 2 3
27 27 H 1.09003 * 109.47209 * 59.99629 * 9 7 2
28 28 H 1.09003 * 109.46894 * 300.00361 * 9 7 2
29 29 H 1.08995 * 109.47350 * 59.99827 * 10 9 7
30 30 H 1.08996 * 109.46487 * 299.99741 * 10 9 7
31 31 H 0.96993 * 126.87266 * 180.13055 * 14 12 11
32 32 H 1.08996 * 109.47150 * 308.52955 * 17 15 14
33 33 H 1.08998 * 109.47387 * 188.52716 * 17 15 14
34 34 H 1.09007 * 110.84628 * 259.10369 * 20 18 17
35 35 H 1.09002 * 110.85103 * 22.51310 * 20 18 17
36 36 H 1.08997 * 111.22347 * 207.97660 * 21 20 18
37 37 H 1.09003 * 111.13190 * 83.74257 * 21 20 18
38 38 H 1.09002 * 110.30953 * 277.47426 * 22 21 20
39 39 H 1.09000 * 110.30834 * 155.40499 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4966 2.0465 -1.4001
5 1 1.4465 2.6527 0.7000
6 1 3.5467 1.4403 0.6999
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0010
9 6 1.2512 -2.4991 -0.0005
10 6 2.2455 -3.6620 -0.0005
11 7 1.5130 -4.9307 -0.0012
12 6 1.1362 -5.5816 1.1055
13 8 1.3639 -5.1866 2.2321
14 7 0.4738 -6.7241 0.8320
15 6 0.4152 -6.8308 -0.6360
16 1 -0.6193 -6.8321 -0.9794
17 6 1.1408 -8.0902 -1.1137
18 6 0.3552 -9.3282 -0.6764
19 1 -0.6744 -9.2553 -1.0265
20 6 1.0152 -10.5998 -1.2517
21 6 0.8770 -11.6061 -0.0735
22 6 1.0311 -10.6558 1.1405
23 8 0.3765 -9.4378 0.7515
24 6 1.1348 -5.5861 -1.1163
25 8 1.3300 -5.2504 -2.2647
26 1 -0.4849 0.8400 0.0004
27 1 0.6241 -2.5567 -0.8903
28 1 0.6249 -2.5571 0.8897
29 1 2.8721 -3.6043 0.8894
30 1 2.8720 -3.6042 -0.8905
31 1 0.1078 -7.3525 1.4738
32 1 2.1396 -8.1212 -0.6783
33 1 1.2186 -8.0745 -2.2008
34 1 0.4749 -10.9540 -2.1297
35 1 2.0633 -10.4189 -1.4904
36 1 1.6738 -12.3497 -0.0942
37 1 -0.1031 -12.0832 -0.0771
38 1 2.0857 -10.4701 1.3441
39 1 0.5462 -11.0822 2.0187
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000924850072.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:06:03
Heat of formation + Delta-G solvation = -127.316633 kcal
Electronic energy + Delta-G solvation = -22515.426991 eV
Core-core repulsion = 19036.405823 eV
Total energy + Delta-G solvation = -3479.021168 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 282.141 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-43.39315 -40.36868 -39.62598 -37.30657 -36.78835 -35.02939 -33.33161 -32.64782
-31.67537 -28.99644 -27.32550 -25.54886 -23.98127 -23.34148 -22.45177 -21.85510
-21.16682 -19.19395 -18.57661 -18.07785 -17.71224 -17.31845 -16.86338 -16.53326
-16.42365 -16.23444 -15.63008 -15.20733 -15.02415 -14.91749 -14.60873 -14.36112
-14.09790 -13.77645 -13.52415 -12.88827 -12.81307 -12.69955 -12.60355 -12.33372
-12.10655 -12.07608 -12.01486 -11.87199 -11.64233 -11.42712 -11.12773 -10.70433
-10.62463 -10.42611 -10.33078 -8.25974 -6.39342 0.58976 1.25915 1.40429
1.42621 1.54039 1.99457 2.23653 2.39633 2.91782 2.98331 3.08095
3.59011 3.69064 3.77684 4.04500 4.08021 4.11383 4.32197 4.39794
4.41675 4.48296 4.53575 4.66558 4.71644 4.76586 4.84632 4.91359
5.01132 5.08128 5.14665 5.34236 5.35763 5.42085 5.70739 5.91050
6.06704 6.14462 6.15984 6.41183 6.74792 7.17040 7.30508 8.87046
Molecular weight = 282.14amu
Principal moments of inertia in cm(-1)
A = 0.041542 B = 0.003503 C = 0.003371
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 673.859279 B = 7990.434838 C = 8304.557253
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.933 5.933
2 C 0.000 4.000
3 Si 0.976 3.024
4 H -0.269 1.269
5 H -0.281 1.281
6 H -0.260 1.260
7 C -0.546 4.546
8 H 0.071 0.929
9 C 0.024 3.976
10 C 0.134 3.866
11 N -0.580 5.580
12 C 0.693 3.307
13 O -0.587 6.587
14 N -0.693 5.693
15 C 0.109 3.891
16 H 0.154 0.846
17 C -0.121 4.121
18 C 0.081 3.919
19 H 0.102 0.898
20 C -0.148 4.148
21 C -0.150 4.150
22 C 0.043 3.957
23 O -0.399 6.399
24 C 0.515 3.485
25 O -0.498 6.498
26 H 0.266 0.734
27 H -0.008 1.008
28 H -0.012 1.012
29 H 0.083 0.917
30 H 0.092 0.908
31 H 0.451 0.549
32 H 0.071 0.929
33 H 0.117 0.883
34 H 0.101 0.899
35 H 0.079 0.921
36 H 0.093 0.907
37 H 0.085 0.915
38 H 0.054 0.946
39 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.701 -26.848 -3.149 27.041
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.572 5.572
2 C -0.199 4.199
3 Si 0.799 3.201
4 H -0.194 1.194
5 H -0.207 1.207
6 H -0.184 1.184
7 C -0.584 4.584
8 H 0.089 0.911
9 C -0.013 4.013
10 C 0.014 3.986
11 N -0.324 5.324
12 C 0.393 3.607
13 O -0.464 6.464
14 N -0.360 5.360
15 C 0.000 4.000
16 H 0.171 0.829
17 C -0.160 4.160
18 C 0.024 3.976
19 H 0.120 0.880
20 C -0.185 4.185
21 C -0.187 4.187
22 C -0.033 4.033
23 O -0.319 6.319
24 C 0.304 3.696
25 O -0.370 6.370
26 H 0.074 0.926
27 H 0.010 0.990
28 H 0.006 0.994
29 H 0.102 0.898
30 H 0.110 0.890
31 H 0.300 0.700
32 H 0.090 0.910
33 H 0.135 0.865
34 H 0.119 0.881
35 H 0.098 0.902
36 H 0.112 0.888
37 H 0.104 0.896
38 H 0.072 0.928
39 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges 0.751 -26.136 -3.048 26.324
hybrid contribution 0.103 0.909 0.341 0.976
sum 0.854 -25.227 -2.706 25.386
Atomic orbital electron populations
1.70122 1.08079 1.28099 1.50932 1.26069 0.95847 1.03785 0.94155
0.85290 0.78594 0.77528 0.78682 1.19394 1.20672 1.18358 1.21476
0.93925 0.91336 1.51702 0.91060 1.19176 0.94419 0.92980 0.94769
1.21716 0.94453 0.79202 1.03278 1.46682 1.53300 1.23834 1.08595
1.16240 0.78980 0.81742 0.83695 1.90946 1.61772 1.71550 1.22162
1.45601 1.59282 1.23001 1.08098 1.22208 1.03386 0.93398 0.80976
0.82930 1.22278 0.99351 0.90933 1.03420 1.22877 1.00165 0.93636
0.80958 0.87989 1.23214 1.02346 0.93376 0.99577 1.23288 1.03973
0.98093 0.93371 1.23505 0.97296 0.83947 0.98579 1.88308 1.79363
1.42394 1.21860 1.21555 0.77839 0.85881 0.84327 1.90756 1.55364
1.72018 1.18868 0.92559 0.98986 0.99412 0.89815 0.89008 0.70010
0.91015 0.86529 0.88067 0.90183 0.88802 0.89623 0.92756 0.89050
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -58.91 13.29 21.45 0.28 -58.62 16
2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16
3 Si 0.98 45.44 29.54 68.60 2.03 47.47 16
4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16
5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16
6 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16
7 C -0.55 -32.34 9.11 25.60 0.23 -32.11 16
8 H 0.07 3.95 7.74 -2.91 -0.02 3.92 16
9 C 0.02 1.39 5.30 29.85 0.16 1.55 16
10 C 0.13 6.15 5.64 86.38 0.49 6.64 16
11 N -0.58 -23.00 2.60 -772.82 -2.01 -25.01 16
12 C 0.69 26.46 8.63 179.33 1.55 28.01 16
13 O -0.59 -27.30 17.48 -3.84 -0.07 -27.37 16
14 N -0.69 -18.51 5.74 -459.13 -2.64 -21.15 16
15 C 0.11 2.44 3.65 44.37 0.16 2.61 16
16 H 0.15 2.64 8.14 -2.39 -0.02 2.62 16
17 C -0.12 -1.89 4.61 30.59 0.14 -1.75 16
18 C 0.08 0.94 3.51 31.06 0.11 1.05 16
19 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16
20 C -0.15 -1.13 6.55 31.95 0.21 -0.92 16
21 C -0.15 -1.07 7.18 32.14 0.23 -0.84 16
22 C 0.04 0.49 7.77 72.65 0.56 1.05 16
23 O -0.40 -6.14 8.73 -148.98 -1.30 -7.44 16
24 C 0.52 17.48 7.65 87.94 0.67 18.16 16
25 O -0.50 -19.36 17.76 -2.88 -0.05 -19.41 16
26 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16
27 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16
28 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16
29 H 0.08 3.82 7.86 -2.39 -0.02 3.80 16
30 H 0.09 3.98 8.00 -2.39 -0.02 3.96 16
31 H 0.45 10.46 7.27 -92.71 -0.67 9.79 16
32 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16
33 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16
34 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16
35 H 0.08 0.64 7.85 -2.39 -0.02 0.62 16
36 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16
37 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16
38 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16
39 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16
Total: -1.00 -78.54 328.12 1.60 -76.94
By element:
Atomic # 1 Polarization: 10.32 SS G_CDS: 0.38 Total: 10.70 kcal
Atomic # 6 Polarization: 18.92 SS G_CDS: 4.98 Total: 23.90 kcal
Atomic # 7 Polarization: -100.42 SS G_CDS: -4.36 Total: -104.78 kcal
Atomic # 8 Polarization: -52.80 SS G_CDS: -1.42 Total: -54.22 kcal
Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal
Total: -78.54 1.60 -76.94 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000924850072.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -50.379 kcal
(2) G-P(sol) polarization free energy of solvation -78.541 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.920 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.937 kcal
(6) G-S(sol) free energy of system = (1) + (5) -127.317 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds