Wall clock time and date at job start Tue Mar 31 2020 03:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.87076 * 2 1 4 4 C 1.54321 * 109.88495 * 238.98378 * 2 1 3 5 5 H 1.09000 * 110.72128 * 99.68612 * 4 2 1 6 6 N 1.46505 * 110.72000 * 336.59615 * 4 2 1 7 7 C 1.36931 * 120.00047 * 155.00185 * 6 4 2 8 8 H 1.08004 * 120.00190 * 359.97438 * 7 6 4 9 9 C 1.38818 * 120.00193 * 180.02562 * 7 6 4 10 10 N 1.31613 * 119.99957 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99805 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47224 * 90.00013 * 11 9 7 13 13 H 1.48506 * 109.46852 * 330.00024 * 11 9 7 14 14 H 1.48494 * 109.47162 * 210.00521 * 11 9 7 15 15 C 1.55148 * 102.94320 * 218.23555 * 4 2 1 16 16 C 1.54910 * 101.58559 * 35.49676 * 15 4 2 17 17 N 1.47022 * 110.00991 * 121.09350 * 2 1 3 18 18 C 1.34773 * 125.64982 * 298.40019 * 17 2 1 19 19 O 1.21737 * 119.99517 * 181.68021 * 18 17 2 20 20 C 1.46372 * 119.99997 * 1.67053 * 18 17 2 21 21 C 1.33973 * 119.23247 * 351.10877 * 20 18 17 22 22 O 1.35004 * 121.68746 * 180.11992 * 21 20 18 23 23 C 1.43244 * 116.82644 * 343.31488 * 22 21 20 24 24 C 1.53550 * 108.09214 * 45.25285 * 23 22 21 25 25 O 1.36214 * 119.22858 * 171.37154 * 20 18 17 26 26 H 1.09007 * 109.46610 * 169.52672 * 1 2 3 27 27 H 1.08991 * 109.47509 * 289.52166 * 1 2 3 28 28 H 1.08999 * 109.46898 * 49.53183 * 1 2 3 29 29 H 0.96998 * 119.99697 * 334.99898 * 6 4 2 30 30 H 0.97003 * 119.99428 * 179.97438 * 10 9 7 31 31 H 1.09003 * 111.00978 * 153.57753 * 15 4 2 32 32 H 1.09001 * 111.00316 * 277.42428 * 15 4 2 33 33 H 1.08996 * 110.37132 * 204.15464 * 16 15 4 34 34 H 1.09002 * 110.36093 * 81.83009 * 16 15 4 35 35 H 1.07997 * 119.15596 * 0.36453 * 21 20 18 36 36 H 1.09003 * 109.73946 * 285.60213 * 23 22 21 37 37 H 1.09007 * 109.74066 * 164.90157 * 23 22 21 38 38 H 1.08995 * 109.75596 * 182.21324 * 24 23 22 39 39 H 1.09002 * 109.75295 * 61.47274 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2437 5 1 2.3474 -0.0433 -2.0224 6 7 1.0487 -1.6858 -1.7476 7 6 1.0613 -2.0614 -3.0643 8 1 1.8128 -1.6659 -3.7315 9 6 0.1075 -2.9498 -3.5419 10 7 0.1200 -3.3112 -4.8073 11 14 -1.1928 -3.6335 -2.3880 12 1 -2.3799 -2.7414 -2.3959 13 1 -0.6412 -3.7114 -1.0114 14 1 -1.5906 -4.9911 -2.8393 15 6 3.2900 -1.5100 -0.6954 16 6 2.8197 -1.8768 0.7343 17 7 2.0331 -0.7134 1.1830 18 6 1.8125 -0.3617 2.4652 19 8 2.3059 -1.0121 3.3682 20 6 0.9797 0.8023 2.7718 21 6 0.5930 1.6107 1.7759 22 8 -0.1731 2.6989 2.0027 23 6 -0.8556 2.7582 3.2608 24 6 0.1373 2.3572 4.3613 25 8 0.6206 1.0414 4.0638 26 1 -0.3633 -1.0106 -0.1868 27 1 -0.3634 0.3434 0.9685 28 1 -0.3633 0.6670 -0.7818 29 1 0.3735 -2.0408 -1.1484 30 1 -0.5463 -3.9323 -5.1409 31 1 3.4889 -2.4061 -1.2832 32 1 4.1664 -0.8627 -0.6642 33 1 3.6779 -2.0296 1.3886 34 1 2.1957 -2.7703 0.7107 35 1 0.8986 1.3838 0.7652 36 1 -1.6983 2.0667 3.2554 37 1 -1.2124 3.7728 3.4387 38 1 -0.3656 2.3552 5.3283 39 1 0.9701 3.0601 4.3800 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985918573.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:57 Heat of formation + Delta-G solvation = -5.920776 kcal Electronic energy + Delta-G solvation = -23534.638149 eV Core-core repulsion = 20060.881100 eV Total energy + Delta-G solvation = -3473.757048 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.59413 -39.91592 -37.92524 -36.82451 -34.39973 -33.40886 -31.68468 -30.81897 -29.58495 -28.42050 -26.09827 -25.12035 -23.44313 -22.97561 -20.73066 -20.05713 -19.55911 -18.40914 -18.02391 -17.36620 -16.71825 -16.03571 -15.59694 -15.22597 -15.00055 -14.60159 -14.50283 -14.32673 -13.87150 -13.59403 -13.33112 -12.92417 -12.73682 -12.52382 -12.24449 -11.78158 -11.57109 -11.38535 -11.24455 -11.05282 -10.90715 -10.87791 -10.80642 -10.40631 -10.19765 -9.78362 -9.65902 -9.06664 -8.60033 -8.06546 -7.43278 -5.89124 -3.26679 1.31356 2.54053 2.99197 3.26112 3.28846 3.31702 3.38613 3.61045 4.09689 4.47823 4.51567 4.57021 4.63741 4.74829 4.85444 4.94027 4.98855 5.09409 5.24653 5.26142 5.34946 5.48034 5.54663 5.61816 5.83251 5.85007 5.91975 6.07749 6.24718 6.37132 6.41033 6.47440 6.62440 6.67751 7.21900 7.57383 7.85252 8.25453 8.29220 9.05578 9.77915 9.95371 11.28527 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.022440 B = 0.005361 C = 0.004921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.473989 B = 5221.649984 C = 5688.150101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.093 3.907 3 H 0.093 0.907 4 C 0.184 3.816 5 H 0.086 0.914 6 N -0.737 5.737 7 C -0.251 4.251 8 H 0.094 0.906 9 C 0.013 3.987 10 N -0.928 5.928 11 Si 0.876 3.124 12 H -0.282 1.282 13 H -0.277 1.277 14 H -0.289 1.289 15 C -0.159 4.159 16 C 0.115 3.885 17 N -0.604 5.604 18 C 0.592 3.408 19 O -0.534 6.534 20 C -0.096 4.096 21 C -0.022 4.022 22 O -0.299 6.299 23 C 0.009 3.991 24 C 0.019 3.981 25 O -0.288 6.288 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.365 0.635 30 H 0.261 0.739 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.230 0.770 36 H 0.080 0.920 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.380 13.008 14.009 19.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.011 4.011 3 H 0.110 0.890 4 C 0.072 3.928 5 H 0.104 0.896 6 N -0.382 5.382 7 C -0.380 4.380 8 H 0.112 0.888 9 C -0.184 4.184 10 N -0.575 5.575 11 Si 0.706 3.294 12 H -0.209 1.209 13 H -0.204 1.204 14 H -0.215 1.215 15 C -0.200 4.200 16 C -0.006 4.006 17 N -0.340 5.340 18 C 0.381 3.619 19 O -0.413 6.413 20 C -0.145 4.145 21 C -0.087 4.087 22 O -0.211 6.211 23 C -0.067 4.067 24 C -0.057 4.057 25 O -0.202 6.202 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.201 0.799 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.245 0.755 36 H 0.098 0.902 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.617 12.660 14.351 19.147 hybrid contribution -1.217 -0.511 0.976 1.641 sum -0.600 12.149 15.327 19.567 Atomic orbital electron populations 1.22937 0.94263 1.04957 1.02756 1.22457 0.95156 0.96216 0.87220 0.88988 1.21103 0.88695 0.91538 0.91442 0.89633 1.42977 1.33453 1.52699 1.09034 1.19042 1.12634 1.22107 0.84260 0.88817 1.24633 0.98722 0.99382 0.95640 1.69683 1.37319 1.37466 1.12989 0.86703 0.82885 0.79059 0.80736 1.20867 1.20357 1.21528 1.23548 0.98977 1.02833 0.94653 1.22248 0.94934 0.87705 0.95750 1.48359 1.52449 1.29280 1.03884 1.16651 0.80329 0.83297 0.81583 1.90817 1.51353 1.54353 1.44752 1.20185 1.07643 1.02119 0.84519 1.25969 0.93071 0.87612 1.02001 1.86176 1.58743 1.39728 1.36475 1.23743 0.94784 1.04702 0.83436 1.23614 0.97995 0.84434 0.99651 1.86401 1.80170 1.30626 1.22991 0.90578 0.91157 0.89686 0.79863 0.92868 0.88674 0.91337 0.90729 0.91190 0.75482 0.90179 0.86279 0.86340 0.90733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.76 7.57 37.16 0.28 -2.48 16 2 C 0.09 1.31 2.68 -66.95 -0.18 1.13 16 3 H 0.09 1.05 6.31 -51.93 -0.33 0.72 16 4 C 0.18 2.99 3.48 -66.10 -0.23 2.76 16 5 H 0.09 1.34 8.09 -51.93 -0.42 0.92 16 6 N -0.74 -15.37 4.34 -51.65 -0.22 -15.59 16 7 C -0.25 -6.41 10.44 -15.06 -0.16 -6.57 16 8 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 9 C 0.01 0.35 5.50 -17.43 -0.10 0.26 16 10 N -0.93 -27.69 13.97 55.49 0.78 -26.91 16 11 Si 0.88 21.09 27.74 -169.99 -4.71 16.38 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 14 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 15 C -0.16 -2.38 6.77 -24.59 -0.17 -2.55 16 16 C 0.11 1.81 6.89 -2.53 -0.02 1.79 16 17 N -0.60 -9.51 3.07 -180.73 -0.55 -10.07 16 18 C 0.59 10.39 7.64 -12.99 -0.10 10.29 16 19 O -0.53 -11.21 17.17 -9.79 -0.17 -11.38 16 20 C -0.10 -1.47 6.15 -37.81 -0.23 -1.71 16 21 C -0.02 -0.28 7.20 29.23 0.21 -0.07 16 22 O -0.30 -3.46 10.47 -30.84 -0.32 -3.78 16 23 C 0.01 0.08 7.30 37.44 0.27 0.35 16 24 C 0.02 0.18 7.31 37.44 0.27 0.46 16 25 O -0.29 -4.31 10.29 -45.64 -0.47 -4.78 16 26 H 0.08 1.29 5.62 -51.93 -0.29 1.00 16 27 H 0.07 0.97 4.19 -53.99 -0.23 0.74 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.37 7.76 3.36 -40.82 -0.14 7.62 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.13 8.02 -51.93 -0.42 0.72 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.23 2.74 1.76 -73.49 -0.13 2.61 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.12 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 305.58 15.07 4.61 4.61 Total: -1.00 -33.11 305.58 -6.14 -39.24 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -4.92 Total: 8.62 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -0.14 Total: 3.66 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.00 Total: -52.57 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.96 Total: -19.94 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.71 Total: 16.38 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.11 -6.14 -39.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985918573.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.323 kcal (2) G-P(sol) polarization free energy of solvation -33.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds