Wall clock time and date at job start Tue Mar 31 2020 03:09:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08999 * 109.87515 * 2 1
4 4 C 1.54326 * 109.88031 * 238.98232 * 2 1 3
5 5 H 1.09002 * 110.72182 * 336.93944 * 4 2 1
6 6 N 1.46509 * 110.71486 * 100.02933 * 4 2 1
7 7 C 1.36939 * 119.99811 * 204.99614 * 6 4 2
8 8 H 1.07999 * 120.00028 * 0.02562 * 7 6 4
9 9 C 1.38809 * 119.99841 * 180.02562 * 7 6 4
10 10 N 1.31624 * 119.99870 * 180.02562 * 9 7 6
11 11 Si 1.86802 * 120.00237 * 0.02562 * 9 7 6
12 12 H 1.48502 * 109.46910 * 270.00073 * 11 9 7
13 13 H 1.48504 * 109.46756 * 29.99556 * 11 9 7
14 14 H 1.48494 * 109.46978 * 150.00035 * 11 9 7
15 15 C 1.55151 * 102.94245 * 218.39295 * 4 2 1
16 16 C 1.54904 * 101.58544 * 35.50388 * 15 4 2
17 17 N 1.47018 * 109.88007 * 121.17897 * 2 1 3
18 18 C 1.34780 * 125.65172 * 298.31875 * 17 2 1
19 19 O 1.21733 * 120.00245 * 181.75250 * 18 17 2
20 20 C 1.46376 * 119.99798 * 1.75615 * 18 17 2
21 21 C 1.33974 * 119.23041 * 351.68697 * 20 18 17
22 22 O 1.35008 * 121.69014 * 180.39470 * 21 20 18
23 23 C 1.43244 * 116.75887 * 342.78800 * 22 21 20
24 24 C 1.53560 * 108.08876 * 45.49303 * 23 22 21
25 25 O 1.36213 * 119.23321 * 171.40875 * 20 18 17
26 26 H 1.09001 * 109.47310 * 167.20271 * 1 2 3
27 27 H 1.09002 * 109.46838 * 287.20613 * 1 2 3
28 28 H 1.09005 * 109.46523 * 47.20040 * 1 2 3
29 29 H 0.96998 * 119.99754 * 24.99835 * 6 4 2
30 30 H 0.96997 * 119.99332 * 180.02562 * 10 9 7
31 31 H 1.09003 * 111.00652 * 153.58274 * 15 4 2
32 32 H 1.09001 * 111.00288 * 277.43007 * 15 4 2
33 33 H 1.08992 * 110.37182 * 204.15291 * 16 15 4
34 34 H 1.08998 * 110.36242 * 81.82400 * 16 15 4
35 35 H 1.08001 * 119.15846 * 0.36182 * 21 20 18
36 36 H 1.08999 * 109.73883 * 165.13557 * 23 22 21
37 37 H 1.09000 * 109.74044 * 285.84470 * 23 22 21
38 38 H 1.09003 * 109.75281 * 61.46827 * 24 23 22
39 39 H 1.08998 * 109.75161 * 182.16531 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9006 1.0251 0.0000
4 6 2.0548 -0.7479 -1.2438
5 1 1.3038 -1.4414 -1.6222
6 7 2.4555 0.1993 -2.2872
7 6 2.4583 -0.1894 -3.6003
8 1 2.1647 -1.1940 -3.8667
9 6 2.8384 0.7078 -4.5889
10 7 2.8406 0.3344 -5.8510
11 14 3.3468 2.4453 -4.1281
12 1 2.1528 3.3282 -4.1333
13 1 3.9529 2.4405 -2.7724
14 1 4.3387 2.9481 -5.1121
15 6 3.2875 -1.5134 -0.6945
16 6 2.8145 -1.8806 0.7341
17 7 2.0300 -0.7158 1.1829
18 6 1.8085 -0.3648 2.4652
19 8 2.3004 -1.0164 3.3682
20 6 0.9766 0.7997 2.7720
21 6 0.5817 1.6026 1.7749
22 8 -0.1796 2.6942 2.0023
23 6 -0.8579 2.7562 3.2625
24 6 0.1388 2.3579 4.3606
25 8 0.6171 1.0387 4.0640
26 1 -0.3634 -1.0021 -0.2276
27 1 -0.3633 0.3040 0.9817
28 1 -0.3632 0.6983 -0.7541
29 1 2.7188 1.1017 -2.0480
30 1 3.1066 0.9613 -6.5417
31 1 3.4851 -2.4093 -1.2830
32 1 4.1653 -0.8680 -0.6616
33 1 3.6715 -2.0359 1.3893
34 1 2.1885 -2.7725 0.7088
35 1 0.8804 1.3711 0.7631
36 1 -1.2142 3.7710 3.4392
37 1 -1.7004 2.0645 3.2615
38 1 0.9716 3.0611 4.3748
39 1 -0.3607 2.3588 5.3294
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000985918579.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:09:07
Heat of formation + Delta-G solvation = -13.729463 kcal
Electronic energy + Delta-G solvation = -23311.739202 eV
Core-core repulsion = 19837.643543 eV
Total energy + Delta-G solvation = -3474.095658 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 282.141 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-41.60505 -39.89908 -37.90595 -36.81516 -34.54077 -33.46740 -31.70451 -30.85584
-29.83959 -28.39395 -26.00137 -25.11565 -23.17001 -22.83803 -20.91008 -20.65664
-19.35654 -18.39463 -18.04115 -17.29139 -16.77774 -16.06822 -15.65327 -15.25203
-14.98365 -14.67254 -14.45134 -14.31813 -13.84994 -13.64004 -13.35510 -13.05013
-12.64054 -12.46162 -12.21343 -11.93255 -11.83194 -11.45450 -11.40583 -11.15942
-10.96918 -10.89423 -10.73535 -10.44748 -10.15019 -9.84481 -9.70472 -9.07138
-8.66601 -8.10508 -7.45325 -5.89613 -3.28428 1.28540 2.49016 2.98883
3.21799 3.29026 3.31173 3.38305 3.55624 4.08892 4.47132 4.48593
4.53777 4.60925 4.72194 4.87101 4.88784 5.00064 5.08970 5.19511
5.24062 5.30239 5.47073 5.52163 5.61574 5.73405 5.82414 5.87958
6.00665 6.09053 6.23034 6.29293 6.45761 6.63355 6.68608 7.19235
7.50307 7.82759 8.20168 8.27991 9.03473 9.75805 9.92476 11.27859
Molecular weight = 282.14amu
Principal moments of inertia in cm(-1)
A = 0.020452 B = 0.005347 C = 0.004566
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1368.723875 B = 5235.703221 C = 6131.456530
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C 0.093 3.907
3 H 0.090 0.910
4 C 0.187 3.813
5 H 0.083 0.917
6 N -0.738 5.738
7 C -0.252 4.252
8 H 0.094 0.906
9 C 0.012 3.988
10 N -0.928 5.928
11 Si 0.880 3.120
12 H -0.282 1.282
13 H -0.276 1.276
14 H -0.289 1.289
15 C -0.156 4.156
16 C 0.110 3.890
17 N -0.604 5.604
18 C 0.593 3.407
19 O -0.534 6.534
20 C -0.098 4.098
21 C -0.022 4.022
22 O -0.298 6.298
23 C 0.009 3.991
24 C 0.018 3.982
25 O -0.288 6.288
26 H 0.071 0.929
27 H 0.073 0.927
28 H 0.084 0.916
29 H 0.362 0.638
30 H 0.261 0.739
31 H 0.086 0.914
32 H 0.076 0.924
33 H 0.077 0.923
34 H 0.070 0.930
35 H 0.231 0.769
36 H 0.119 0.881
37 H 0.080 0.920
38 H 0.075 0.925
39 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.829 3.431 16.849 18.501
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.248 4.248
2 C -0.011 4.011
3 H 0.107 0.893
4 C 0.076 3.924
5 H 0.101 0.899
6 N -0.380 5.380
7 C -0.381 4.381
8 H 0.112 0.888
9 C -0.185 4.185
10 N -0.574 5.574
11 Si 0.710 3.290
12 H -0.208 1.208
13 H -0.202 1.202
14 H -0.216 1.216
15 C -0.197 4.197
16 C -0.011 4.011
17 N -0.339 5.339
18 C 0.383 3.617
19 O -0.412 6.412
20 C -0.146 4.146
21 C -0.086 4.086
22 O -0.210 6.210
23 C -0.067 4.067
24 C -0.058 4.058
25 O -0.202 6.202
26 H 0.090 0.910
27 H 0.091 0.909
28 H 0.103 0.897
29 H 0.196 0.804
30 H 0.072 0.928
31 H 0.104 0.896
32 H 0.094 0.906
33 H 0.095 0.905
34 H 0.088 0.912
35 H 0.245 0.755
36 H 0.137 0.863
37 H 0.098 0.902
38 H 0.093 0.907
39 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges -6.642 3.022 17.203 18.687
hybrid contribution 0.298 1.509 0.397 1.588
sum -6.344 4.531 17.600 19.250
Atomic orbital electron populations
1.22968 0.94089 1.04464 1.03266 1.22390 0.94828 0.96704 0.87188
0.89322 1.21219 0.94377 0.91144 0.85678 0.89868 1.42706 1.80816
1.11063 1.03409 1.19012 1.39370 0.99213 0.80545 0.88849 1.24660
1.01001 0.97764 0.95048 1.69692 1.53499 1.35275 0.98973 0.86627
0.78558 0.86190 0.77600 1.20826 1.20242 1.21571 1.23580 1.00670
1.02216 0.93217 1.22319 0.95147 0.87444 0.96238 1.48244 1.52653
1.29170 1.03846 1.16645 0.80273 0.83265 0.81506 1.90817 1.51392
1.54289 1.44682 1.20166 1.07587 1.02361 0.84509 1.26082 0.92833
0.87539 1.02159 1.86208 1.59049 1.39432 1.36293 1.23746 0.94785
1.04737 0.83414 1.23641 0.98076 0.84382 0.99670 1.86431 1.80351
1.30400 1.22987 0.90956 0.90894 0.89691 0.80414 0.92837 0.89590
0.90572 0.90506 0.91219 0.75477 0.86267 0.90160 0.90667 0.86286
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -2.40 7.88 37.16 0.29 -2.11 16
2 C 0.09 1.33 2.47 -66.95 -0.17 1.16 16
3 H 0.09 1.27 5.92 -51.93 -0.31 0.96 16
4 C 0.19 3.10 3.14 -66.09 -0.21 2.90 16
5 H 0.08 1.39 7.60 -51.93 -0.39 0.99 16
6 N -0.74 -15.39 5.03 -51.65 -0.26 -15.65 16
7 C -0.25 -6.46 10.44 -15.06 -0.16 -6.62 16
8 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16
9 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16
10 N -0.93 -27.61 13.97 55.49 0.78 -26.83 16
11 Si 0.88 20.67 27.73 -169.99 -4.71 15.96 16
12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
13 H -0.28 -6.08 6.52 56.52 0.37 -5.71 16
14 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16
15 C -0.16 -2.37 6.77 -24.59 -0.17 -2.53 16
16 C 0.11 1.56 6.92 -2.53 -0.02 1.54 16
17 N -0.60 -9.09 3.06 -181.74 -0.56 -9.65 16
18 C 0.59 10.08 7.63 -12.98 -0.10 9.98 16
19 O -0.53 -10.77 17.17 -9.79 -0.17 -10.94 16
20 C -0.10 -1.48 6.13 -37.81 -0.23 -1.71 16
21 C -0.02 -0.29 7.22 29.23 0.21 -0.08 16
22 O -0.30 -3.59 10.47 -30.84 -0.32 -3.91 16
23 C 0.01 0.07 7.29 37.45 0.27 0.35 16
24 C 0.02 0.17 7.32 37.45 0.27 0.45 16
25 O -0.29 -4.22 10.30 -45.63 -0.47 -4.69 16
26 H 0.07 0.88 7.84 -51.93 -0.41 0.47 16
27 H 0.07 0.90 4.25 -52.90 -0.22 0.68 16
28 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16
29 H 0.36 7.48 5.42 -40.82 -0.22 7.25 16
30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16
31 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16
32 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16
33 H 0.08 1.09 8.02 -51.93 -0.42 0.68 16
34 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16
35 H 0.23 2.98 1.72 -75.18 -0.13 2.85 16
36 H 0.12 0.65 8.14 -51.93 -0.42 0.22 16
37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16
38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16
39 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16
LS Contribution 309.47 15.07 4.66 4.66
Total: -1.00 -32.83 309.47 -6.22 -39.05
By element:
Atomic # 1 Polarization: 13.52 SS G_CDS: -5.07 Total: 8.45 kcal
Atomic # 6 Polarization: 3.65 SS G_CDS: -0.09 Total: 3.56 kcal
Atomic # 7 Polarization: -52.09 SS G_CDS: -0.04 Total: -52.13 kcal
Atomic # 8 Polarization: -18.58 SS G_CDS: -0.96 Total: -19.54 kcal
Atomic # 14 Polarization: 20.67 SS G_CDS: -4.71 Total: 15.96 kcal
Total LS contribution 4.66 Total: 4.66 kcal
Total: -32.83 -6.22 -39.05 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000985918579.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.317 kcal
(2) G-P(sol) polarization free energy of solvation -32.828 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.511 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.218 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.046 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.729 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds