Wall clock time and date at job start Tue Mar 31 2020 03:09:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08999 * 109.87515 * 2 1
4 4 C 1.54326 * 109.88031 * 238.98232 * 2 1 3
5 5 H 1.09002 * 110.72182 * 336.93944 * 4 2 1
6 6 N 1.46509 * 110.71486 * 100.02933 * 4 2 1
7 7 C 1.36939 * 119.99811 * 204.99614 * 6 4 2
8 8 H 1.07999 * 120.00028 * 0.02562 * 7 6 4
9 9 C 1.38809 * 119.99841 * 180.02562 * 7 6 4
10 10 N 1.31624 * 119.99870 * 180.02562 * 9 7 6
11 11 Si 1.86802 * 120.00237 * 0.02562 * 9 7 6
12 12 H 1.48502 * 109.46910 * 270.00073 * 11 9 7
13 13 H 1.48504 * 109.46756 * 29.99556 * 11 9 7
14 14 H 1.48494 * 109.46978 * 150.00035 * 11 9 7
15 15 C 1.55151 * 102.94245 * 218.39295 * 4 2 1
16 16 C 1.54904 * 101.58544 * 35.50388 * 15 4 2
17 17 N 1.47018 * 109.88007 * 121.17897 * 2 1 3
18 18 C 1.34780 * 125.65172 * 298.31875 * 17 2 1
19 19 O 1.21733 * 120.00245 * 181.75250 * 18 17 2
20 20 C 1.46376 * 119.99798 * 1.75615 * 18 17 2
21 21 C 1.33974 * 119.23041 * 351.68697 * 20 18 17
22 22 O 1.35008 * 121.69014 * 180.39470 * 21 20 18
23 23 C 1.43244 * 116.75887 * 342.78800 * 22 21 20
24 24 C 1.53560 * 108.08876 * 45.49303 * 23 22 21
25 25 O 1.36213 * 119.23321 * 171.40875 * 20 18 17
26 26 H 1.09001 * 109.47310 * 167.20271 * 1 2 3
27 27 H 1.09002 * 109.46838 * 287.20613 * 1 2 3
28 28 H 1.09005 * 109.46523 * 47.20040 * 1 2 3
29 29 H 0.96998 * 119.99754 * 24.99835 * 6 4 2
30 30 H 0.96997 * 119.99332 * 180.02562 * 10 9 7
31 31 H 1.09003 * 111.00652 * 153.58274 * 15 4 2
32 32 H 1.09001 * 111.00288 * 277.43007 * 15 4 2
33 33 H 1.08992 * 110.37182 * 204.15291 * 16 15 4
34 34 H 1.08998 * 110.36242 * 81.82400 * 16 15 4
35 35 H 1.08001 * 119.15846 * 0.36182 * 21 20 18
36 36 H 1.08999 * 109.73883 * 165.13557 * 23 22 21
37 37 H 1.09000 * 109.74044 * 285.84470 * 23 22 21
38 38 H 1.09003 * 109.75281 * 61.46827 * 24 23 22
39 39 H 1.08998 * 109.75161 * 182.16531 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9006 1.0251 0.0000
4 6 2.0548 -0.7479 -1.2438
5 1 1.3038 -1.4414 -1.6222
6 7 2.4555 0.1993 -2.2872
7 6 2.4583 -0.1894 -3.6003
8 1 2.1647 -1.1940 -3.8667
9 6 2.8384 0.7078 -4.5889
10 7 2.8406 0.3344 -5.8510
11 14 3.3468 2.4453 -4.1281
12 1 2.1528 3.3282 -4.1333
13 1 3.9529 2.4405 -2.7724
14 1 4.3387 2.9481 -5.1121
15 6 3.2875 -1.5134 -0.6945
16 6 2.8145 -1.8806 0.7341
17 7 2.0300 -0.7158 1.1829
18 6 1.8085 -0.3648 2.4652
19 8 2.3004 -1.0164 3.3682
20 6 0.9766 0.7997 2.7720
21 6 0.5817 1.6026 1.7749
22 8 -0.1796 2.6942 2.0023
23 6 -0.8579 2.7562 3.2625
24 6 0.1388 2.3579 4.3606
25 8 0.6171 1.0387 4.0640
26 1 -0.3634 -1.0021 -0.2276
27 1 -0.3633 0.3040 0.9817
28 1 -0.3632 0.6983 -0.7541
29 1 2.7188 1.1017 -2.0480
30 1 3.1066 0.9613 -6.5417
31 1 3.4851 -2.4093 -1.2830
32 1 4.1653 -0.8680 -0.6616
33 1 3.6715 -2.0359 1.3893
34 1 2.1885 -2.7725 0.7088
35 1 0.8804 1.3711 0.7631
36 1 -1.2142 3.7710 3.4392
37 1 -1.7004 2.0645 3.2615
38 1 0.9716 3.0611 4.3748
39 1 -0.3607 2.3588 5.3294
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000985918579.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:09:07
Heat of formation + Delta-G solvation = -37.070143 kcal
Electronic energy + Delta-G solvation = -23312.751329 eV
Core-core repulsion = 19837.643543 eV
Total energy + Delta-G solvation = -3475.107786 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 282.141 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-42.64827 -41.01280 -39.16415 -37.86517 -36.16584 -34.65589 -33.46621 -31.81603
-31.29379 -29.42087 -27.33787 -26.12207 -24.62812 -24.22020 -22.18882 -21.75745
-20.47280 -19.83978 -19.32663 -18.45676 -17.84084 -17.30845 -16.83936 -16.41700
-16.18299 -15.97962 -15.77977 -15.27696 -15.15747 -14.92849 -14.64312 -14.44675
-14.11062 -13.74313 -13.41904 -13.22190 -13.01508 -12.82403 -12.70824 -12.54643
-12.16865 -12.10261 -12.00114 -11.78504 -11.76171 -11.46398 -11.06331 -10.94290
-9.90771 -9.33423 -9.11695 -7.98010 -5.33432 0.18944 1.40156 1.43567
1.45855 1.52706 1.98852 2.14371 2.52105 2.53286 3.26015 3.36453
3.38511 3.43722 3.64174 3.73303 3.81609 3.95188 3.97665 4.14293
4.24210 4.29380 4.34444 4.45595 4.59586 4.60130 4.74173 4.78936
4.83249 4.88148 5.08002 5.19049 5.22483 5.35425 5.73551 5.81377
6.18433 6.24439 6.33826 6.96484 7.09593 7.82247 8.00461 9.22748
Molecular weight = 282.14amu
Principal moments of inertia in cm(-1)
A = 0.020452 B = 0.005347 C = 0.004566
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1368.723875 B = 5235.703221 C = 6131.456530
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C 0.101 3.899
3 H 0.096 0.904
4 C 0.181 3.819
5 H 0.084 0.916
6 N -0.739 5.739
7 C -0.226 4.226
8 H 0.066 0.934
9 C -0.056 4.056
10 N -0.981 5.981
11 Si 0.944 3.056
12 H -0.275 1.275
13 H -0.251 1.251
14 H -0.303 1.303
15 C -0.147 4.147
16 C 0.113 3.887
17 N -0.600 5.600
18 C 0.588 3.412
19 O -0.576 6.576
20 C -0.121 4.121
21 C 0.005 3.995
22 O -0.305 6.305
23 C 0.005 3.995
24 C 0.011 3.989
25 O -0.317 6.317
26 H 0.076 0.924
27 H 0.078 0.922
28 H 0.092 0.908
29 H 0.367 0.633
30 H 0.257 0.743
31 H 0.089 0.911
32 H 0.068 0.932
33 H 0.076 0.924
34 H 0.085 0.915
35 H 0.230 0.770
36 H 0.156 0.844
37 H 0.089 0.911
38 H 0.077 0.923
39 H 0.150 0.850
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.859 5.044 18.601 20.814
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.242 4.242
2 C -0.003 4.003
3 H 0.113 0.887
4 C 0.071 3.929
5 H 0.102 0.898
6 N -0.381 5.381
7 C -0.357 4.357
8 H 0.084 0.916
9 C -0.248 4.248
10 N -0.632 5.632
11 Si 0.772 3.228
12 H -0.201 1.201
13 H -0.175 1.175
14 H -0.230 1.230
15 C -0.188 4.188
16 C -0.009 4.009
17 N -0.334 5.334
18 C 0.380 3.620
19 O -0.458 6.458
20 C -0.169 4.169
21 C -0.061 4.061
22 O -0.217 6.217
23 C -0.070 4.070
24 C -0.064 4.064
25 O -0.232 6.232
26 H 0.095 0.905
27 H 0.096 0.904
28 H 0.110 0.890
29 H 0.201 0.799
30 H 0.066 0.934
31 H 0.108 0.892
32 H 0.086 0.914
33 H 0.094 0.906
34 H 0.103 0.897
35 H 0.245 0.755
36 H 0.174 0.826
37 H 0.107 0.893
38 H 0.095 0.905
39 H 0.168 0.832
Dipole moment (debyes) X Y Z Total
from point charges -7.697 4.638 19.010 21.027
hybrid contribution 0.538 0.969 -0.080 1.111
sum -7.158 5.607 18.930 21.001
Atomic orbital electron populations
1.22916 0.92520 1.05064 1.03722 1.22299 0.95954 0.96451 0.85576
0.88657 1.21373 0.95013 0.90833 0.85631 0.89787 1.42620 1.81050
1.11992 1.02487 1.18967 1.36476 0.97739 0.82510 0.91598 1.25392
1.02448 1.02059 0.94911 1.69867 1.56245 1.36725 1.00314 0.85583
0.78057 0.81145 0.78051 1.20109 1.17531 1.23025 1.23429 0.99542
1.01961 0.93865 1.22340 0.95466 0.87838 0.95209 1.48250 1.52273
1.29227 1.03677 1.17013 0.80075 0.83560 0.81335 1.90784 1.53321
1.55918 1.45797 1.19939 1.08950 1.02553 0.85434 1.25971 0.91662
0.86921 1.01546 1.86192 1.58681 1.38521 1.38290 1.24113 0.94250
1.07218 0.81374 1.24016 0.98544 0.82378 1.01492 1.86376 1.80858
1.33174 1.22790 0.90493 0.90408 0.88973 0.79938 0.93429 0.89238
0.91373 0.90567 0.89665 0.75483 0.82607 0.89326 0.90459 0.83219
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -4.21 7.88 71.98 0.57 -3.64 16
2 C 0.10 2.67 2.47 45.34 0.11 2.78 16
3 H 0.10 2.46 5.92 -2.39 -0.01 2.45 16
4 C 0.18 5.71 3.14 46.18 0.14 5.85 16
5 H 0.08 2.68 7.60 -2.39 -0.02 2.66 16
6 N -0.74 -29.60 5.03 -317.32 -1.60 -31.20 16
7 C -0.23 -11.54 10.44 84.03 0.88 -10.66 16
8 H 0.07 3.68 8.06 -2.91 -0.02 3.66 16
9 C -0.06 -3.08 5.50 84.86 0.47 -2.61 16
10 N -0.98 -59.64 13.97 21.65 0.30 -59.34 16
11 Si 0.94 42.14 27.73 68.60 1.90 44.04 16
12 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16
13 H -0.25 -9.98 6.52 99.48 0.65 -9.33 16
14 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16
15 C -0.15 -4.28 6.77 31.98 0.22 -4.06 16
16 C 0.11 3.04 6.92 86.85 0.60 3.64 16
17 N -0.60 -17.21 3.06 -847.11 -2.60 -19.80 16
18 C 0.59 19.51 7.63 86.36 0.66 20.17 16
19 O -0.58 -23.31 17.17 9.84 0.17 -23.14 16
20 C -0.12 -3.47 6.13 23.42 0.14 -3.33 16
21 C 0.00 0.11 7.22 66.85 0.48 0.59 16
22 O -0.31 -6.36 10.47 -69.31 -0.73 -7.09 16
23 C 0.00 0.06 7.29 72.17 0.53 0.59 16
24 C 0.01 0.17 7.32 72.17 0.53 0.70 16
25 O -0.32 -8.85 10.30 -71.87 -0.74 -9.59 16
26 H 0.08 1.70 7.84 -2.39 -0.02 1.68 16
27 H 0.08 1.73 4.25 -3.30 -0.01 1.72 16
28 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16
29 H 0.37 14.17 5.42 -92.71 -0.50 13.66 16
30 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16
31 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16
32 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16
33 H 0.08 2.10 8.02 -2.39 -0.02 2.08 16
34 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16
35 H 0.23 5.34 1.72 -24.23 -0.04 5.30 16
36 H 0.16 0.96 8.14 -2.39 -0.02 0.94 16
37 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16
38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16
39 H 0.15 1.40 8.14 -2.39 -0.02 1.38 16
Total: -1.00 -71.92 309.47 2.53 -69.40
By element:
Atomic # 1 Polarization: 26.21 SS G_CDS: 0.48 Total: 26.69 kcal
Atomic # 6 Polarization: 4.71 SS G_CDS: 5.33 Total: 10.03 kcal
Atomic # 7 Polarization: -106.45 SS G_CDS: -3.89 Total: -110.34 kcal
Atomic # 8 Polarization: -38.53 SS G_CDS: -1.30 Total: -39.83 kcal
Atomic # 14 Polarization: 42.14 SS G_CDS: 1.90 Total: 44.04 kcal
Total: -71.92 2.53 -69.40 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000985918579.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.326 kcal
(2) G-P(sol) polarization free energy of solvation -71.922 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.596 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.396 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.070 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds