Wall clock time and date at job start Tue Mar 31 2020 03:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00124 * 2 1 4 4 H 1.48502 * 109.47154 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47258 * 300.00248 * 3 2 1 6 6 H 1.48502 * 109.47265 * 60.00274 * 3 2 1 7 7 C 1.38814 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99871 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00269 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00400 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.52052 * 324.92069 * 10 9 7 12 12 C 1.53041 * 109.49441 * 84.99859 * 10 9 7 13 13 C 1.53041 * 109.53662 * 181.31808 * 12 10 9 14 14 C 1.53196 * 109.31511 * 298.63744 * 13 12 10 15 15 N 1.46927 * 108.77296 * 54.63363 * 14 13 12 16 16 C 1.34770 * 120.63057 * 126.37430 * 15 14 13 17 17 O 1.21274 * 120.00321 * 180.02562 * 16 15 14 18 18 C 1.50709 * 119.99888 * 359.97438 * 16 15 14 19 19 H 1.09001 * 110.59860 * 42.78231 * 18 16 15 20 20 C 1.54102 * 110.54786 * 280.00414 * 18 16 15 21 21 N 1.47062 * 103.98842 * 241.33218 * 20 18 16 22 22 C 1.34257 * 109.00559 * 0.12255 * 21 20 18 23 23 O 1.21585 * 122.99858 * 179.97438 * 22 21 20 24 24 N 1.33956 * 113.95949 * 359.86924 * 22 21 20 25 25 C 1.46930 * 118.73723 * 306.64406 * 15 14 13 26 26 H 0.96999 * 119.99617 * 359.97438 * 1 2 3 27 27 H 0.97004 * 119.99383 * 0.02562 * 9 7 2 28 28 H 1.08998 * 109.46285 * 61.30298 * 12 10 9 29 29 H 1.08998 * 109.46059 * 301.33959 * 12 10 9 30 30 H 1.09005 * 109.49438 * 178.68415 * 13 12 10 31 31 H 1.09002 * 109.49617 * 58.58728 * 13 12 10 32 32 H 1.09008 * 109.58098 * 294.84812 * 14 13 12 33 33 H 1.08994 * 109.70174 * 174.49446 * 14 13 12 34 34 H 1.09002 * 110.55087 * 359.97438 * 20 18 16 35 35 H 1.08997 * 110.54745 * 122.66589 * 20 18 16 36 36 H 0.96995 * 125.40605 * 180.02562 * 21 20 18 37 37 H 0.97000 * 125.40159 * 180.08326 * 24 22 21 38 38 H 1.08997 * 109.58046 * 173.14687 * 25 15 14 39 39 H 1.08999 * 109.58552 * 293.56764 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0027 11 1 2.9682 -3.5514 -0.5931 12 6 2.4223 -4.0375 1.4341 13 6 3.2159 -5.3461 1.4313 14 6 2.3498 -6.4628 0.8399 15 7 1.8756 -6.0418 -0.4854 16 6 2.0763 -6.8216 -1.5661 17 8 1.6804 -6.4627 -2.6548 18 6 2.7936 -8.1391 -1.4219 19 1 2.4479 -8.6688 -0.5342 20 6 4.3180 -7.9213 -1.3625 21 7 4.8270 -8.6485 -2.5351 22 6 3.7934 -9.2037 -3.1877 23 8 3.9272 -9.8653 -4.1990 24 7 2.6022 -8.9652 -2.6233 25 6 1.1837 -4.7517 -0.6112 26 1 -0.4849 0.8401 0.0004 27 1 0.3555 -2.3880 -0.0023 28 1 1.5108 -4.1670 2.0177 29 1 3.0275 -3.2466 1.8770 30 1 3.4951 -5.6044 2.4528 31 1 4.1153 -5.2248 0.8274 32 1 1.4960 -6.6470 1.4921 33 1 2.9400 -7.3741 0.7444 34 1 4.5562 -6.8603 -1.4378 35 1 4.7289 -8.3407 -0.4442 36 1 5.7593 -8.7141 -2.7945 37 1 1.7490 -9.2864 -2.9545 38 1 1.0069 -4.5331 -1.6643 39 1 0.2329 -4.7937 -0.0800 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000038928.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:59 Heat of formation + Delta-G solvation = -32.309578 kcal Electronic energy + Delta-G solvation = -22709.580256 eV Core-core repulsion = 19266.971655 eV Total energy + Delta-G solvation = -3442.608601 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.57957 -39.74274 -37.51086 -36.36355 -34.62884 -33.24732 -32.36944 -31.41409 -29.82805 -28.12814 -25.59048 -24.23809 -23.32375 -22.19460 -22.00891 -20.44778 -19.15634 -18.12610 -17.70302 -17.26646 -16.54094 -16.01838 -15.61068 -15.27288 -14.78589 -14.51921 -14.20243 -14.10945 -14.07674 -13.60429 -13.52880 -13.22077 -13.02986 -12.91007 -12.44900 -12.27459 -11.20496 -11.07104 -10.97090 -10.76600 -10.52970 -10.51722 -10.46397 -10.28699 -10.09466 -9.77952 -9.60772 -9.08009 -8.98627 -8.59156 -7.06176 -5.84006 -3.14111 2.30325 2.50600 2.77281 3.05566 3.39135 3.44923 3.47117 3.70625 3.94129 4.14817 4.45835 4.52424 4.72166 4.90438 4.97818 5.04867 5.15909 5.29649 5.41142 5.46347 5.56269 5.65564 5.69092 5.89785 6.03709 6.10817 6.27471 6.42844 6.53735 6.73325 6.76572 6.89726 6.94285 7.10081 7.34249 7.63620 8.03453 8.33710 8.39480 9.45221 9.99539 10.34120 11.38416 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.028082 B = 0.003753 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.828041 B = 7458.196535 C = 7669.434311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.721 5.721 10 C 0.168 3.832 11 H 0.049 0.951 12 C -0.138 4.138 13 C -0.133 4.133 14 C 0.103 3.897 15 N -0.599 5.599 16 C 0.500 3.500 17 O -0.522 6.522 18 C 0.103 3.897 19 H 0.116 0.884 20 C 0.103 3.897 21 N -0.740 5.740 22 C 0.706 3.294 23 O -0.585 6.585 24 N -0.714 5.714 25 C 0.105 3.895 26 H 0.256 0.744 27 H 0.385 0.615 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.433 0.567 37 H 0.434 0.566 38 H 0.093 0.907 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.512 -18.227 5.044 20.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.362 5.362 10 C 0.057 3.943 11 H 0.067 0.933 12 C -0.179 4.179 13 C -0.172 4.172 14 C -0.019 4.019 15 N -0.333 5.333 16 C 0.284 3.716 17 O -0.397 6.397 18 C -0.007 4.007 19 H 0.134 0.866 20 C -0.022 4.022 21 N -0.403 5.403 22 C 0.405 3.595 23 O -0.463 6.463 24 N -0.376 5.376 25 C -0.017 4.017 26 H 0.066 0.934 27 H 0.218 0.782 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.275 0.725 37 H 0.277 0.723 38 H 0.111 0.889 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.468 -18.207 3.918 20.065 hybrid contribution 0.087 1.036 0.125 1.047 sum 7.554 -17.170 4.043 19.189 Atomic orbital electron populations 1.69669 1.05132 1.25711 1.57331 1.24754 0.95520 0.97749 1.02680 0.86122 0.78779 0.84048 0.77237 1.20535 1.21783 1.21820 1.19235 0.90994 0.83833 1.43137 0.91077 1.42311 1.05822 0.99496 1.88577 1.20381 0.94656 0.86036 0.93192 0.93255 1.22300 0.99702 0.95254 1.00657 1.21945 0.98728 0.95930 1.00635 1.21873 0.98690 0.97584 0.83795 1.48139 1.57299 1.20457 1.07437 1.20646 0.80561 0.85864 0.84518 1.90768 1.50270 1.72887 1.25757 1.21895 0.96115 0.91511 0.91212 0.86601 1.22281 0.90150 0.99203 0.90612 1.45112 1.09215 1.56817 1.29188 1.15928 0.81424 0.79668 0.82454 1.90997 1.85047 1.45208 1.25041 1.44829 1.08849 1.55211 1.28698 1.21975 0.95216 0.81002 1.03514 0.93445 0.78165 0.92362 0.91423 0.91061 0.91734 0.90855 0.90446 0.89262 0.88618 0.72522 0.72317 0.88859 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.41 13.06 55.49 0.72 -26.69 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.72 -17.13 5.12 -53.53 -0.27 -17.40 16 10 C 0.17 3.06 2.91 -68.04 -0.20 2.86 16 11 H 0.05 0.96 8.08 -51.93 -0.42 0.55 16 12 C -0.14 -2.06 5.47 -26.69 -0.15 -2.21 16 13 C -0.13 -1.30 6.08 -26.61 -0.16 -1.47 16 14 C 0.10 0.85 6.19 -3.71 -0.02 0.82 16 15 N -0.60 -7.21 2.98 -173.03 -0.52 -7.72 16 16 C 0.50 6.36 6.82 -10.98 -0.07 6.28 16 17 O -0.52 -9.22 15.97 5.56 0.09 -9.13 16 18 C 0.10 0.89 3.15 -68.20 -0.21 0.67 16 19 H 0.12 0.59 7.02 -51.93 -0.36 0.23 16 20 C 0.10 0.72 6.95 -3.16 -0.02 0.70 16 21 N -0.74 -6.77 6.40 -64.61 -0.41 -7.18 16 22 C 0.71 9.14 8.92 -88.12 -0.79 8.35 16 23 O -0.59 -10.03 18.05 5.29 0.10 -9.94 16 24 N -0.71 -7.74 5.60 -59.25 -0.33 -8.07 16 25 C 0.11 1.68 5.88 -3.93 -0.02 1.66 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.38 9.74 7.80 -40.82 -0.32 9.43 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 33 H 0.08 0.36 5.26 -51.93 -0.27 0.09 16 34 H 0.09 0.69 7.72 -51.93 -0.40 0.28 16 35 H 0.10 0.32 8.12 -51.93 -0.42 -0.10 16 36 H 0.43 3.10 8.96 -40.82 -0.37 2.74 16 37 H 0.43 4.39 8.96 -40.82 -0.37 4.03 16 38 H 0.09 1.75 7.01 -51.93 -0.36 1.39 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 319.77 15.07 4.82 4.82 Total: -1.00 -35.82 319.77 -8.10 -43.92 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -5.38 Total: 9.83 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: -1.89 Total: 10.70 kcal Atomic # 7 Polarization: -66.25 SS G_CDS: -0.81 Total: -67.06 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.18 Total: -19.06 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.82 -8.10 -43.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000038928.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.612 kcal (2) G-P(sol) polarization free energy of solvation -35.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds