Wall clock time and date at job start Tue Mar 31 2020 03:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00124 * 2 1 4 4 H 1.48502 * 109.47154 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47258 * 300.00248 * 3 2 1 6 6 H 1.48502 * 109.47265 * 60.00274 * 3 2 1 7 7 C 1.38814 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99871 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00269 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00400 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.52052 * 324.92069 * 10 9 7 12 12 C 1.53041 * 109.49441 * 84.99859 * 10 9 7 13 13 C 1.53041 * 109.53662 * 181.31808 * 12 10 9 14 14 C 1.53196 * 109.31511 * 298.63744 * 13 12 10 15 15 N 1.46927 * 108.77296 * 54.63363 * 14 13 12 16 16 C 1.34770 * 120.63057 * 126.37430 * 15 14 13 17 17 O 1.21274 * 120.00321 * 180.02562 * 16 15 14 18 18 C 1.50709 * 119.99888 * 359.97438 * 16 15 14 19 19 H 1.09001 * 110.59860 * 42.78231 * 18 16 15 20 20 C 1.54102 * 110.54786 * 280.00414 * 18 16 15 21 21 N 1.47062 * 103.98842 * 241.33218 * 20 18 16 22 22 C 1.34257 * 109.00559 * 0.12255 * 21 20 18 23 23 O 1.21585 * 122.99858 * 179.97438 * 22 21 20 24 24 N 1.33956 * 113.95949 * 359.86924 * 22 21 20 25 25 C 1.46930 * 118.73723 * 306.64406 * 15 14 13 26 26 H 0.96999 * 119.99617 * 359.97438 * 1 2 3 27 27 H 0.97004 * 119.99383 * 0.02562 * 9 7 2 28 28 H 1.08998 * 109.46285 * 61.30298 * 12 10 9 29 29 H 1.08998 * 109.46059 * 301.33959 * 12 10 9 30 30 H 1.09005 * 109.49438 * 178.68415 * 13 12 10 31 31 H 1.09002 * 109.49617 * 58.58728 * 13 12 10 32 32 H 1.09008 * 109.58098 * 294.84812 * 14 13 12 33 33 H 1.08994 * 109.70174 * 174.49446 * 14 13 12 34 34 H 1.09002 * 110.55087 * 359.97438 * 20 18 16 35 35 H 1.08997 * 110.54745 * 122.66589 * 20 18 16 36 36 H 0.96995 * 125.40605 * 180.02562 * 21 20 18 37 37 H 0.97000 * 125.40159 * 180.08326 * 24 22 21 38 38 H 1.08997 * 109.58046 * 173.14687 * 25 15 14 39 39 H 1.08999 * 109.58552 * 293.56764 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0027 11 1 2.9682 -3.5514 -0.5931 12 6 2.4223 -4.0375 1.4341 13 6 3.2159 -5.3461 1.4313 14 6 2.3498 -6.4628 0.8399 15 7 1.8756 -6.0418 -0.4854 16 6 2.0763 -6.8216 -1.5661 17 8 1.6804 -6.4627 -2.6548 18 6 2.7936 -8.1391 -1.4219 19 1 2.4479 -8.6688 -0.5342 20 6 4.3180 -7.9213 -1.3625 21 7 4.8270 -8.6485 -2.5351 22 6 3.7934 -9.2037 -3.1877 23 8 3.9272 -9.8653 -4.1990 24 7 2.6022 -8.9652 -2.6233 25 6 1.1837 -4.7517 -0.6112 26 1 -0.4849 0.8401 0.0004 27 1 0.3555 -2.3880 -0.0023 28 1 1.5108 -4.1670 2.0177 29 1 3.0275 -3.2466 1.8770 30 1 3.4951 -5.6044 2.4528 31 1 4.1153 -5.2248 0.8274 32 1 1.4960 -6.6470 1.4921 33 1 2.9400 -7.3741 0.7444 34 1 4.5562 -6.8603 -1.4378 35 1 4.7289 -8.3407 -0.4442 36 1 5.7593 -8.7141 -2.7945 37 1 1.7490 -9.2864 -2.9545 38 1 1.0069 -4.5331 -1.6643 39 1 0.2329 -4.7937 -0.0800 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000038928.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:58 Heat of formation + Delta-G solvation = -63.634441 kcal Electronic energy + Delta-G solvation = -22710.938604 eV Core-core repulsion = 19266.971655 eV Total energy + Delta-G solvation = -3443.966949 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -42.43833 -40.78361 -38.72252 -37.36754 -36.21945 -34.03223 -33.86901 -32.72577 -31.00311 -29.45331 -26.58208 -25.87176 -24.34710 -23.34533 -22.84222 -21.66524 -20.28208 -19.15746 -18.94788 -18.62977 -17.39461 -17.05853 -16.76306 -16.48178 -16.19307 -15.55092 -15.48190 -15.28282 -15.08540 -14.95342 -14.67402 -14.42704 -14.07457 -13.86322 -13.57514 -13.20534 -12.92972 -12.86506 -12.30097 -12.15920 -12.07201 -11.79113 -11.69225 -11.63041 -11.55161 -11.28810 -10.90864 -10.53460 -9.83435 -9.69100 -9.02275 -7.96250 -5.25259 1.38443 1.46152 1.47606 1.56594 1.60138 1.92443 2.11306 2.55738 3.01830 3.27548 3.32675 3.38269 3.83417 3.94384 4.06291 4.10127 4.18856 4.30666 4.36018 4.42314 4.60700 4.65406 4.72087 4.83161 4.88421 4.95216 5.13520 5.24632 5.43260 5.48455 5.53621 5.65898 5.89722 6.20571 6.25293 6.26512 6.41976 7.05639 7.31921 7.50765 8.06066 8.28467 9.27345 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.028082 B = 0.003753 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.828041 B = 7458.196535 C = 7669.434311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.074 4.074 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.297 1.297 6 H -0.291 1.291 7 C -0.236 4.236 8 H 0.075 0.925 9 N -0.738 5.738 10 C 0.166 3.834 11 H 0.032 0.968 12 C -0.130 4.130 13 C -0.125 4.125 14 C 0.098 3.902 15 N -0.593 5.593 16 C 0.496 3.504 17 O -0.583 6.583 18 C 0.110 3.890 19 H 0.170 0.830 20 C 0.101 3.899 21 N -0.730 5.730 22 C 0.695 3.305 23 O -0.639 6.639 24 N -0.715 5.715 25 C 0.118 3.882 26 H 0.251 0.749 27 H 0.372 0.628 28 H 0.055 0.945 29 H 0.043 0.957 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.130 0.870 34 H 0.084 0.916 35 H 0.153 0.847 36 H 0.441 0.559 37 H 0.434 0.566 38 H 0.055 0.945 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.592 -20.285 7.571 23.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.267 4.267 3 Si 0.799 3.201 4 H -0.190 1.190 5 H -0.225 1.225 6 H -0.218 1.218 7 C -0.368 4.368 8 H 0.093 0.907 9 N -0.378 5.378 10 C 0.057 3.943 11 H 0.050 0.950 12 C -0.171 4.171 13 C -0.163 4.163 14 C -0.023 4.023 15 N -0.326 5.326 16 C 0.283 3.717 17 O -0.462 6.462 18 C 0.001 3.999 19 H 0.187 0.813 20 C -0.023 4.023 21 N -0.393 5.393 22 C 0.393 3.607 23 O -0.521 6.521 24 N -0.375 5.375 25 C -0.006 4.006 26 H 0.060 0.940 27 H 0.204 0.796 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.125 0.875 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.148 0.852 34 H 0.102 0.898 35 H 0.170 0.830 36 H 0.285 0.715 37 H 0.276 0.724 38 H 0.074 0.926 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.619 -20.299 6.526 23.391 hybrid contribution -0.547 1.654 -0.656 1.862 sum 9.071 -18.644 5.871 21.549 Atomic orbital electron populations 1.69818 1.06596 1.25964 1.59592 1.25530 0.96337 1.00998 1.03804 0.85121 0.78324 0.80026 0.76589 1.18959 1.22488 1.21833 1.19583 0.91317 0.85039 1.40865 0.90711 1.42530 1.05487 1.00919 1.88843 1.20583 0.93613 0.84618 0.95482 0.94998 1.22091 1.00097 0.97840 0.97029 1.21921 0.98126 0.93081 1.03185 1.22287 0.99819 0.98731 0.81433 1.48170 1.56536 1.18561 1.09299 1.21532 0.79696 0.87050 0.83466 1.90754 1.52793 1.74456 1.28192 1.22229 0.96947 0.88788 0.91958 0.81334 1.22658 0.88674 0.99226 0.91762 1.45110 1.08967 1.55783 1.29444 1.16259 0.82588 0.79654 0.82151 1.90950 1.85946 1.47708 1.27451 1.44900 1.08387 1.54824 1.29400 1.21479 0.95401 0.82838 1.00891 0.94050 0.79581 0.92640 0.93770 0.87504 0.91156 0.89210 0.85241 0.89787 0.82956 0.71530 0.72356 0.92613 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.85 13.06 21.65 0.28 -58.57 16 2 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 3 Si 0.97 45.68 29.55 68.60 2.03 47.71 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 6 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 7 C -0.24 -12.85 9.93 84.03 0.83 -12.01 16 8 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 9 N -0.74 -36.13 5.12 -323.27 -1.66 -37.79 16 10 C 0.17 6.07 2.91 44.92 0.13 6.20 16 11 H 0.03 1.27 8.08 -2.39 -0.02 1.25 16 12 C -0.13 -3.67 5.47 30.62 0.17 -3.50 16 13 C -0.12 -1.84 6.08 30.67 0.19 -1.66 16 14 C 0.10 1.06 6.19 86.36 0.53 1.60 16 15 N -0.59 -12.79 2.98 -819.74 -2.44 -15.23 16 16 C 0.50 11.62 6.82 87.66 0.60 12.21 16 17 O -0.58 -20.91 15.97 -3.01 -0.05 -20.96 16 18 C 0.11 1.42 3.15 44.52 0.14 1.56 16 19 H 0.17 0.50 7.02 -2.39 -0.02 0.48 16 20 C 0.10 0.89 6.95 86.64 0.60 1.49 16 21 N -0.73 -11.22 6.40 -476.88 -3.05 -14.28 16 22 C 0.69 17.03 8.92 179.47 1.60 18.64 16 23 O -0.64 -22.03 18.05 -3.98 -0.07 -22.11 16 24 N -0.71 -14.09 5.60 -460.08 -2.58 -16.66 16 25 C 0.12 3.81 5.88 86.22 0.51 4.31 16 26 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 27 H 0.37 19.72 7.80 -92.71 -0.72 18.99 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.13 0.14 5.26 -2.39 -0.01 0.13 16 34 H 0.08 0.92 7.72 -2.39 -0.02 0.90 16 35 H 0.15 -0.22 8.12 -2.39 -0.02 -0.24 16 36 H 0.44 5.20 8.96 -92.71 -0.83 4.37 16 37 H 0.43 8.39 8.96 -92.71 -0.83 7.56 16 38 H 0.06 2.22 7.01 -2.39 -0.02 2.20 16 39 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -85.63 319.77 -3.05 -88.67 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: -1.28 Total: 24.12 kcal Atomic # 6 Polarization: 19.33 SS G_CDS: 5.77 Total: 25.09 kcal Atomic # 7 Polarization: -133.08 SS G_CDS: -9.44 Total: -142.53 kcal Atomic # 8 Polarization: -42.94 SS G_CDS: -0.12 Total: -43.06 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -85.63 -3.05 -88.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000038928.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.040 kcal (2) G-P(sol) polarization free energy of solvation -85.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds