Wall clock time and date at job start Tue Mar 31 2020 02:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.08997 * 110.64214 * 325.69707 * 10 9 7 12 12 C 1.55146 * 110.71850 * 88.84404 * 10 9 7 13 13 C 1.55127 * 101.48399 * 153.73372 * 12 10 9 14 14 N 1.47421 * 104.94295 * 323.21842 * 13 12 10 15 15 C 1.34775 * 125.64840 * 203.96590 * 14 13 12 16 16 O 1.21283 * 120.00104 * 180.02562 * 15 14 13 17 17 C 1.50701 * 120.00152 * 0.04529 * 15 14 13 18 18 C 1.52997 * 109.47337 * 180.02562 * 17 15 14 19 19 H 1.08998 * 110.62212 * 51.90495 * 18 17 15 20 20 C 1.54374 * 110.69780 * 288.62633 * 18 17 15 21 21 O 1.45948 * 105.06460 * 223.79336 * 20 18 17 22 22 C 1.34560 * 108.40890 * 32.44021 * 21 20 18 23 23 O 1.20815 * 125.95013 * 146.64297 * 22 21 20 24 24 C 1.51520 * 108.10606 * 326.66493 * 22 21 20 25 25 C 1.47021 * 108.70281 * 24.00450 * 14 13 12 26 26 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 27 27 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 28 28 H 1.08998 * 111.00756 * 271.93469 * 12 10 9 29 29 H 1.08999 * 111.01132 * 35.79037 * 12 10 9 30 30 H 1.09004 * 110.41804 * 204.28598 * 13 12 10 31 31 H 1.09004 * 110.30168 * 82.09026 * 13 12 10 32 32 H 1.09004 * 109.46873 * 300.00012 * 17 15 14 33 33 H 1.08998 * 109.46759 * 59.99586 * 17 15 14 34 34 H 1.09004 * 110.31858 * 342.68484 * 20 18 17 35 35 H 1.08998 * 110.32122 * 104.89388 * 20 18 17 36 36 H 1.08997 * 110.40097 * 261.58962 * 24 22 21 37 37 H 1.08994 * 110.49934 * 139.22162 * 24 22 21 38 38 H 1.08996 * 109.88233 * 239.52206 * 25 14 13 39 39 H 1.09000 * 110.00801 * 118.42635 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9798 -3.5653 -0.5878 12 6 2.3578 -4.1251 1.4349 13 6 2.4640 -5.6613 1.2471 14 7 1.4446 -5.9918 0.2347 15 6 0.8565 -7.1940 0.0757 16 8 0.0271 -7.3530 -0.7949 17 6 1.2290 -8.3407 0.9798 18 6 0.4228 -9.5810 0.5891 19 1 0.5178 -9.7801 -0.4783 20 6 -1.0595 -9.4160 0.9875 21 8 -1.4380 -10.6955 1.5788 22 6 -0.3608 -11.2131 2.1972 23 8 -0.3740 -11.8848 3.2014 24 6 0.8717 -10.8065 1.4153 25 6 1.1764 -4.7932 -0.5732 26 1 -0.4850 0.8401 0.0004 27 1 0.3555 -2.3880 -0.0068 28 1 3.2980 -3.7067 1.7942 29 1 1.5372 -3.8706 2.1057 30 1 2.2487 -6.1748 2.1841 31 1 3.4572 -5.9305 0.8874 32 1 2.2934 -8.5527 0.8779 33 1 1.0089 -8.0745 2.0136 34 1 -1.1681 -8.6144 1.7182 35 1 -1.6677 -9.2114 0.1065 36 1 1.1869 -11.6148 0.7556 37 1 1.6804 -10.5327 2.0928 38 1 0.1243 -4.5199 -0.4931 39 1 1.4322 -4.9813 -1.6159 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018716529.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:10 Heat of formation + Delta-G solvation = -102.536739 kcal Electronic energy + Delta-G solvation = -21896.425820 eV Core-core repulsion = 18418.479189 eV Total energy + Delta-G solvation = -3477.946631 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.32677 -39.90203 -37.90910 -37.36263 -34.50575 -34.22353 -31.67287 -29.71477 -29.44695 -28.12738 -26.93908 -23.85134 -22.94322 -21.69530 -21.53890 -20.15680 -19.23293 -17.62892 -17.47718 -16.98953 -16.74527 -16.70188 -16.03290 -15.55057 -14.81800 -14.52940 -14.10134 -13.89103 -13.73405 -13.55501 -13.33250 -12.97570 -12.67776 -12.60547 -12.24529 -11.94641 -11.80720 -11.65829 -11.56730 -11.26982 -10.90003 -10.85680 -10.79766 -10.51014 -10.42456 -10.16005 -9.88839 -9.78761 -9.04393 -8.55597 -7.12398 -5.88882 -3.20036 1.61164 2.57028 2.93650 3.10805 3.36355 3.41567 3.43530 3.65720 3.87210 4.16026 4.28645 4.48299 4.59483 4.81913 4.91029 4.92982 5.05018 5.11940 5.19762 5.24777 5.27673 5.42263 5.46337 5.48830 5.65660 5.66580 5.85280 6.04338 6.13607 6.25958 6.38517 6.44162 6.50637 6.79816 7.11151 7.56632 7.58713 8.11722 8.28274 9.39911 9.93407 10.27811 11.33183 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.041715 B = 0.002884 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.065581 B = 9707.466521 C = 9836.268931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.247 4.247 8 H 0.073 0.927 9 N -0.716 5.716 10 C 0.171 3.829 11 H 0.065 0.935 12 C -0.155 4.155 13 C 0.096 3.904 14 N -0.611 5.611 15 C 0.522 3.478 16 O -0.545 6.545 17 C -0.132 4.132 18 C -0.105 4.105 19 H 0.111 0.889 20 C 0.063 3.937 21 O -0.354 6.354 22 C 0.485 3.515 23 O -0.454 6.454 24 C -0.184 4.184 25 C 0.100 3.900 26 H 0.257 0.743 27 H 0.386 0.614 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.112 0.888 38 H 0.071 0.929 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.081 -18.739 2.460 19.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.378 4.378 8 H 0.091 0.909 9 N -0.356 5.356 10 C 0.060 3.940 11 H 0.083 0.917 12 C -0.197 4.197 13 C -0.027 4.027 14 N -0.344 5.344 15 C 0.310 3.690 16 O -0.424 6.424 17 C -0.172 4.172 18 C -0.124 4.124 19 H 0.130 0.870 20 C -0.010 4.010 21 O -0.272 6.272 22 C 0.325 3.675 23 O -0.336 6.336 24 C -0.222 4.222 25 C -0.024 4.024 26 H 0.067 0.933 27 H 0.221 0.779 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.130 0.870 38 H 0.090 0.910 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.483 -19.111 2.440 19.781 hybrid contribution 0.354 1.107 0.018 1.162 sum 4.837 -18.004 2.459 18.804 Atomic orbital electron populations 1.69662 1.05190 1.25981 1.56816 1.24786 0.95530 0.97873 1.02396 0.86168 0.78642 0.83598 0.77600 1.21583 1.21699 1.20660 1.19205 0.91046 0.83788 1.43793 0.90940 1.42367 1.05808 0.99376 1.88057 1.21186 0.94355 0.85733 0.92776 0.91686 1.23613 1.02859 0.91472 1.01724 1.22473 0.91143 0.98123 0.90963 1.48500 1.40953 1.10209 1.34749 1.20123 0.81239 0.82649 0.84953 1.90710 1.33545 1.82873 1.35238 1.21772 1.02337 0.92617 1.00447 1.22178 0.94518 0.93199 1.02548 0.87032 1.24237 0.95691 0.81576 0.99544 1.87307 1.37897 1.35822 1.66189 1.23300 0.85559 0.76924 0.81740 1.90707 1.86442 1.36107 1.20350 1.23030 0.98532 1.00068 1.00598 1.22337 1.01258 0.84159 0.94600 0.93283 0.77934 0.90417 0.90606 0.91268 0.91466 0.87788 0.88402 0.89806 0.86066 0.86387 0.86965 0.91036 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.06 13.06 55.49 0.72 -26.33 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 21.42 29.55 -169.99 -5.02 16.40 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.25 -6.44 9.97 -15.06 -0.15 -6.59 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.72 -16.68 5.24 -51.65 -0.27 -16.95 16 10 C 0.17 3.03 3.59 -66.10 -0.24 2.80 16 11 H 0.07 1.15 8.11 -51.93 -0.42 0.73 16 12 C -0.16 -2.27 6.79 -24.47 -0.17 -2.43 16 13 C 0.10 1.04 6.69 -2.41 -0.02 1.02 16 14 N -0.61 -7.99 3.33 -170.38 -0.57 -8.55 16 15 C 0.52 6.38 7.68 -10.99 -0.08 6.29 16 16 O -0.55 -8.44 15.59 5.55 0.09 -8.35 16 17 C -0.13 -0.97 3.90 -27.88 -0.11 -1.08 16 18 C -0.11 -0.77 2.75 -89.13 -0.25 -1.01 16 19 H 0.11 0.84 7.89 -51.93 -0.41 0.43 16 20 C 0.06 0.57 6.61 37.88 0.25 0.82 16 21 O -0.35 -3.91 11.17 -39.73 -0.44 -4.35 16 22 C 0.48 5.08 8.50 36.41 0.31 5.39 16 23 O -0.45 -6.29 18.00 -18.31 -0.33 -6.62 16 24 C -0.18 -1.15 6.61 -26.71 -0.18 -1.33 16 25 C 0.10 1.61 6.62 -3.06 -0.02 1.59 16 26 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 27 H 0.39 9.74 7.53 -40.82 -0.31 9.44 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.07 0.58 7.48 -51.93 -0.39 0.20 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.10 0.61 7.67 -51.93 -0.40 0.21 16 34 H 0.08 0.72 7.69 -51.93 -0.40 0.32 16 35 H 0.12 1.11 8.07 -51.93 -0.42 0.69 16 36 H 0.12 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.11 0.53 7.74 -51.93 -0.40 0.12 16 38 H 0.07 1.29 7.70 -51.93 -0.40 0.89 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 327.34 15.07 4.93 4.93 Total: -1.00 -32.49 327.34 -7.26 -39.74 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -5.63 Total: 4.98 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -0.74 Total: 5.11 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: -0.11 Total: -51.84 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.69 Total: -19.33 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.49 -7.26 -39.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018716529.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.793 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds