Wall clock time and date at job start Tue Mar 31 2020 03:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34229 * 116.99490 * 2 1 4 4 O 1.20824 * 120.00567 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99263 * 180.02562 * 3 2 1 6 6 H 1.09000 * 115.55378 * 34.33047 * 5 3 2 7 7 C 1.52998 * 117.49886 * 248.62044 * 5 3 2 8 8 C 1.52996 * 60.00227 * 252.51583 * 7 5 3 9 9 H 1.08997 * 117.51844 * 107.48090 * 8 7 5 10 10 C 1.50701 * 117.49833 * 252.51420 * 8 7 5 11 11 O 1.21277 * 120.00384 * 68.61767 * 10 8 7 12 12 N 1.34784 * 119.99663 * 248.62283 * 10 8 7 13 13 C 1.46499 * 119.99758 * 179.97438 * 12 10 8 14 14 H 1.08997 * 112.85065 * 336.19682 * 13 12 10 15 15 C 1.53962 * 113.74103 * 107.39962 * 13 12 10 16 16 C 1.53786 * 87.01719 * 139.94430 * 15 13 12 17 17 H 1.09002 * 113.61357 * 220.04719 * 16 15 13 18 18 N 1.46497 * 113.61643 * 89.22773 * 16 15 13 19 19 C 1.36944 * 119.99791 * 105.85866 * 18 16 15 20 20 H 1.07993 * 120.00042 * 0.02562 * 19 18 16 21 21 C 1.38812 * 119.99770 * 179.97438 * 19 18 16 22 22 N 1.31624 * 120.00274 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99962 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46991 * 60.00036 * 23 21 19 25 25 H 1.48495 * 109.47111 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47014 * 300.00285 * 23 21 19 27 27 C 1.53781 * 87.17350 * 334.63802 * 16 15 13 28 28 H 1.09001 * 109.46600 * 299.99341 * 1 2 3 29 29 H 1.08999 * 109.47438 * 59.99666 * 1 2 3 30 30 H 1.09000 * 109.47175 * 180.02562 * 1 2 3 31 31 H 1.09003 * 117.50291 * 145.02393 * 7 5 3 32 32 H 1.09001 * 117.49786 * 0.02562 * 7 5 3 33 33 H 0.96994 * 120.00269 * 359.97438 * 12 10 8 34 34 H 1.08993 * 113.61598 * 25.42412 * 15 13 12 35 35 H 1.09000 * 113.66569 * 254.46767 * 15 13 12 36 36 H 0.96995 * 120.00146 * 285.86755 * 18 16 15 37 37 H 0.96996 * 120.00281 * 179.97438 * 22 21 19 38 38 H 1.09001 * 113.61695 * 139.93969 * 27 16 15 39 39 H 1.08996 * 113.61580 * 270.76247 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0781 0.4886 -0.5555 7 6 4.2464 1.8056 1.2630 8 6 4.2007 2.6672 -0.0005 9 1 3.5296 3.5260 -0.0004 10 6 5.4856 2.8463 -0.7674 11 8 5.9778 1.9060 -1.3542 12 7 6.0878 4.0517 -0.8010 13 6 7.3372 4.2257 -1.5460 14 1 7.8879 3.2937 -1.6724 15 6 7.1741 5.0254 -2.8515 16 6 8.5089 5.7068 -2.5065 17 1 8.5247 6.7738 -2.7284 18 7 9.6809 4.9997 -3.0286 19 6 10.3605 5.5031 -4.1057 20 1 10.0328 6.4214 -4.5699 21 6 11.4714 4.8335 -4.6001 22 7 11.8712 3.7144 -4.0341 23 14 12.3989 5.5204 -6.0689 24 1 12.9129 6.8744 -5.7406 25 1 13.5367 4.6250 -6.3988 26 1 11.4840 5.6077 -7.2354 27 6 8.2033 5.3884 -1.0333 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 5.2058 1.3684 1.5397 32 1 3.6053 2.0974 2.0949 33 1 5.6940 4.8038 -0.3320 34 1 6.3221 5.7051 -2.8437 35 1 7.2176 4.4098 -3.7500 36 1 9.9755 4.1751 -2.6116 37 1 12.6472 3.2463 -4.3798 38 1 9.0762 5.0655 -0.4661 39 1 7.6343 6.1682 -0.5271 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020022064.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:19 Heat of formation + Delta-G solvation = -61.263563 kcal Electronic energy + Delta-G solvation = -21317.089446 eV Core-core repulsion = 17840.932554 eV Total energy + Delta-G solvation = -3476.156892 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.05537 -39.93450 -38.36664 -37.07996 -35.89378 -34.04661 -32.62124 -29.74865 -28.60110 -25.88254 -25.12059 -24.54587 -23.74194 -22.37350 -20.95284 -20.11639 -18.78870 -18.35452 -17.40309 -17.20938 -16.69235 -16.59442 -15.97536 -15.03275 -14.82132 -14.65349 -14.21557 -13.95577 -13.67877 -13.12384 -13.02367 -12.75134 -12.67653 -12.35617 -12.09822 -11.99151 -11.68744 -11.17848 -11.17557 -11.01345 -10.86181 -10.82303 -10.77935 -10.28359 -10.17556 -9.96062 -9.72359 -9.61288 -8.91476 -8.72828 -7.00617 -5.78901 -3.09084 1.68547 2.17398 2.48487 3.23842 3.43986 3.48277 3.49382 3.49540 4.17780 4.34677 4.45152 4.56490 4.72537 4.74493 4.81718 4.88085 5.06767 5.14740 5.21455 5.23771 5.39131 5.47381 5.54276 5.57781 5.86922 5.98473 5.98800 6.08840 6.20088 6.35938 6.60983 6.71623 6.77822 7.02519 7.38198 7.61549 7.69385 8.29061 8.39375 9.50004 10.06136 10.40116 11.43226 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.036306 B = 0.002667 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.027351 B =10498.083653 C =10719.755989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.352 6.352 3 C 0.496 3.504 4 O -0.507 6.507 5 C -0.141 4.141 6 H 0.151 0.849 7 C -0.115 4.115 8 C -0.154 4.154 9 H 0.138 0.862 10 C 0.539 3.461 11 O -0.534 6.534 12 N -0.709 5.709 13 C 0.124 3.876 14 H 0.114 0.886 15 C -0.184 4.184 16 C 0.171 3.829 17 H 0.068 0.932 18 N -0.706 5.706 19 C -0.246 4.246 20 H 0.072 0.928 21 C -0.011 4.011 22 N -0.931 5.931 23 Si 0.910 3.090 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 C -0.163 4.163 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.119 0.881 32 H 0.112 0.888 33 H 0.398 0.602 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.386 0.614 37 H 0.257 0.743 38 H 0.073 0.927 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.785 -3.418 13.054 24.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.268 6.268 3 C 0.339 3.661 4 O -0.395 6.395 5 C -0.160 4.160 6 H 0.169 0.831 7 C -0.153 4.153 8 C -0.176 4.176 9 H 0.156 0.844 10 C 0.324 3.676 11 O -0.411 6.411 12 N -0.358 5.358 13 C 0.021 3.979 14 H 0.132 0.868 15 C -0.227 4.227 16 C 0.058 3.942 17 H 0.086 0.914 18 N -0.344 5.344 19 C -0.377 4.377 20 H 0.090 0.910 21 C -0.208 4.208 22 N -0.578 5.578 23 Si 0.740 3.260 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.203 4.203 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.232 0.768 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.220 0.780 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.521 -3.725 12.460 24.295 hybrid contribution 0.027 0.427 -0.544 0.692 sum -20.494 -3.298 11.916 23.935 Atomic orbital electron populations 1.23318 0.75954 1.03919 1.02672 1.86502 1.23578 1.32886 1.83851 1.22544 0.90287 0.81361 0.71926 1.90670 1.66893 1.36413 1.45498 1.21671 0.88218 1.00075 1.06034 0.83090 1.23099 1.02770 0.99339 0.90068 1.22378 0.98096 0.95420 1.01674 0.84429 1.19422 0.84379 0.83350 0.80486 1.90749 1.65319 1.40238 1.44777 1.46010 1.25895 1.10906 1.53036 1.22731 0.83595 0.99179 0.92434 0.86777 1.24355 1.00763 0.99966 0.97591 1.20910 0.86986 0.95724 0.90558 0.91428 1.42190 1.28894 1.27708 1.35629 1.19220 1.06895 1.05800 1.05771 0.90977 1.24787 0.98843 0.97373 0.99760 1.69655 1.27660 1.17601 1.42896 0.86233 0.79311 0.77903 0.82504 1.21186 1.21662 1.21188 1.23872 0.99397 0.97160 0.99832 0.91803 0.91708 0.87854 0.86266 0.86976 0.76764 0.91233 0.90978 0.77975 0.93306 0.90805 0.90230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.30 16 2 O -0.35 -3.45 10.57 -39.26 -0.41 -3.86 16 3 C 0.50 5.42 7.74 36.01 0.28 5.70 16 4 O -0.51 -6.53 16.01 -18.75 -0.30 -6.83 16 5 C -0.14 -1.44 5.81 -91.77 -0.53 -1.98 16 6 H 0.15 1.66 7.67 -51.93 -0.40 1.26 16 7 C -0.12 -0.93 9.94 -26.73 -0.27 -1.19 16 8 C -0.15 -1.60 5.70 -91.77 -0.52 -2.12 16 9 H 0.14 1.28 7.67 -51.93 -0.40 0.88 16 10 C 0.54 7.51 7.61 -10.98 -0.08 7.43 16 11 O -0.53 -9.80 15.86 5.56 0.09 -9.71 16 12 N -0.71 -9.08 5.36 -52.92 -0.28 -9.36 16 13 C 0.12 2.02 4.13 -67.02 -0.28 1.74 16 14 H 0.11 2.24 7.46 -51.93 -0.39 1.85 16 15 C -0.18 -3.24 7.70 -25.82 -0.20 -3.43 16 16 C 0.17 3.31 4.55 -67.12 -0.31 3.01 16 17 H 0.07 1.28 8.11 -51.93 -0.42 0.86 16 18 N -0.71 -17.60 5.31 -52.64 -0.28 -17.88 16 19 C -0.25 -6.80 9.97 -15.06 -0.15 -6.95 16 20 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 21 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 22 N -0.93 -28.22 13.06 55.49 0.72 -27.50 16 23 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 C -0.16 -2.51 7.57 -25.92 -0.20 -2.70 16 28 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 29 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 30 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.12 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.40 3.76 8.73 -40.82 -0.36 3.40 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.39 10.28 7.90 -40.82 -0.32 9.96 16 37 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16 LS Contribution 340.74 15.07 5.13 5.13 Total: -1.00 -34.11 340.74 -7.27 -41.39 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -5.63 Total: 10.88 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -1.28 Total: 0.37 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 0.16 Total: -54.74 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.63 Total: -20.40 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.11 -7.27 -41.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020022064.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.878 kcal (2) G-P(sol) polarization free energy of solvation -34.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds