Wall clock time and date at job start Tue Mar 31 2020 02:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99835 * 2 1 4 4 H 1.48506 * 109.47186 * 239.99993 * 3 2 1 5 5 H 1.48498 * 109.47204 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46942 * 120.00387 * 3 2 1 7 7 C 1.38814 * 120.00032 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99943 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99727 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99538 * 180.02562 * 9 7 2 11 11 H 1.09000 * 112.91246 * 23.74459 * 10 9 7 12 12 C 1.53786 * 113.61518 * 154.99700 * 10 9 7 13 13 C 1.53781 * 87.17350 * 89.15486 * 12 10 9 14 14 H 1.08997 * 113.61223 * 270.84552 * 13 12 10 15 15 N 1.46506 * 113.61405 * 140.02258 * 13 12 10 16 16 C 1.34776 * 119.99831 * 154.99784 * 15 13 12 17 17 O 1.21281 * 120.00056 * 0.02562 * 16 15 13 18 18 C 1.50693 * 120.00109 * 179.97438 * 16 15 13 19 19 C 1.52993 * 109.47452 * 180.02562 * 18 16 15 20 20 H 1.08999 * 110.75252 * 57.01555 * 19 18 16 21 21 C 1.54267 * 110.84579 * 293.55015 * 19 18 16 22 22 O 1.45379 * 106.62745 * 226.61454 * 21 19 18 23 23 C 1.33997 * 111.49737 * 357.72942 * 22 21 19 24 24 O 1.20819 * 125.70124 * 199.68899 * 23 22 21 25 25 C 1.51671 * 108.60573 * 19.65295 * 23 22 21 26 26 C 1.53782 * 87.08260 * 25.39213 * 13 12 10 27 27 H 0.96996 * 120.00477 * 359.97438 * 1 2 3 28 28 H 0.97001 * 120.00345 * 359.97438 * 9 7 2 29 29 H 1.09002 * 113.61357 * 334.56403 * 12 10 9 30 30 H 1.09002 * 113.61608 * 203.74565 * 12 10 9 31 31 H 0.96990 * 119.99883 * 335.00341 * 15 13 12 32 32 H 1.09001 * 109.47227 * 300.00402 * 18 16 15 33 33 H 1.09005 * 109.47040 * 60.00185 * 18 16 15 34 34 H 1.08996 * 110.02708 * 345.90586 * 21 19 18 35 35 H 1.09003 * 110.03024 * 107.32298 * 21 19 18 36 36 H 1.09002 * 110.70822 * 213.09640 * 25 23 22 37 37 H 1.09001 * 110.70899 * 89.84825 * 25 23 22 38 38 H 1.08997 * 113.61668 * 89.11298 * 26 13 12 39 39 H 1.08998 * 113.61674 * 219.93807 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6567 -0.0016 11 1 3.0658 -3.5649 0.4035 12 6 1.2597 -4.8291 0.5928 13 6 0.7205 -5.0813 -0.8251 14 1 -0.1908 -4.5275 -1.0506 15 7 0.6240 -6.5014 -1.1722 16 6 -0.2550 -6.9077 -2.1096 17 8 -0.9657 -6.0978 -2.6661 18 6 -0.3539 -8.3683 -2.4671 19 6 -1.4186 -8.5575 -3.5494 20 1 -1.1900 -7.9515 -4.4261 21 6 -2.8223 -8.2247 -3.0029 22 8 -3.6996 -9.3046 -3.4244 23 6 -3.0478 -10.2015 -4.1768 24 8 -3.5602 -10.9969 -4.9282 25 6 -1.5591 -10.0510 -3.9285 26 6 1.9984 -4.4033 -1.3468 27 1 -0.4851 0.8400 0.0004 28 1 0.3555 -2.3881 -0.0016 29 1 0.4928 -4.5195 1.3029 30 1 1.8863 -5.6365 0.9718 31 1 1.1926 -7.1491 -0.7273 32 1 0.6090 -8.7171 -2.8402 33 1 -0.6296 -8.9412 -1.5817 34 1 -2.7955 -8.1687 -1.9147 35 1 -3.1696 -7.2783 -3.4174 36 1 -0.9930 -10.2740 -4.8328 37 1 -1.2392 -10.6893 -3.1049 38 1 2.8281 -5.0935 -1.4987 39 1 1.8281 -3.7511 -2.2034 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020074336.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:20 Heat of formation + Delta-G solvation = -90.994875 kcal Electronic energy + Delta-G solvation = -21580.159600 eV Core-core repulsion = 18102.713461 eV Total energy + Delta-G solvation = -3477.446138 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.34125 -39.93603 -38.26614 -37.63586 -34.56772 -34.12831 -32.72436 -29.96907 -29.20062 -27.57530 -25.18508 -24.43666 -23.01201 -21.80800 -21.54028 -20.32741 -18.84058 -17.75499 -17.45248 -17.05098 -16.95471 -16.40779 -15.93314 -15.48263 -14.93135 -14.73171 -14.04624 -13.98408 -13.74479 -13.68937 -13.14378 -13.03690 -12.71408 -12.41432 -12.15663 -12.05877 -11.84883 -11.69513 -11.55847 -10.90355 -10.84862 -10.76270 -10.50958 -10.34801 -10.22702 -10.01798 -9.77621 -9.64936 -8.96514 -8.81509 -7.05822 -5.83477 -3.13947 1.74452 2.54901 2.97321 3.09546 3.40513 3.44986 3.46324 3.57756 3.85236 4.17901 4.29729 4.52262 4.65313 4.85172 4.88076 4.99211 5.03788 5.14065 5.16276 5.23093 5.32229 5.41635 5.44357 5.61244 5.80992 5.92067 6.00803 6.12823 6.28776 6.51011 6.53465 6.64777 6.70046 6.95144 7.15352 7.51593 7.64620 8.19361 8.34640 9.45395 10.01056 10.34846 11.38563 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.036542 B = 0.002751 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.055996 B =10174.258239 C =10605.408718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.248 4.248 8 H 0.072 0.928 9 N -0.705 5.705 10 C 0.172 3.828 11 H 0.068 0.932 12 C -0.165 4.165 13 C 0.124 3.876 14 H 0.114 0.886 15 N -0.716 5.716 16 C 0.505 3.495 17 O -0.537 6.537 18 C -0.133 4.133 19 C -0.106 4.106 20 H 0.108 0.892 21 C 0.065 3.935 22 O -0.352 6.352 23 C 0.486 3.514 24 O -0.459 6.459 25 C -0.185 4.185 26 C -0.184 4.184 27 H 0.258 0.742 28 H 0.386 0.614 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.397 0.603 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.068 0.932 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.571 -20.942 -2.831 21.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.379 4.379 8 H 0.090 0.910 9 N -0.343 5.343 10 C 0.058 3.942 11 H 0.086 0.914 12 C -0.204 4.204 13 C 0.020 3.980 14 H 0.132 0.868 15 N -0.366 5.366 16 C 0.291 3.709 17 O -0.414 6.414 18 C -0.174 4.174 19 C -0.125 4.125 20 H 0.127 0.873 21 C -0.009 4.009 22 O -0.269 6.269 23 C 0.327 3.673 24 O -0.343 6.343 25 C -0.223 4.223 26 C -0.226 4.226 27 H 0.067 0.933 28 H 0.220 0.780 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.230 0.770 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.087 0.913 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.681 -20.512 -3.503 20.820 hybrid contribution 0.656 0.604 0.236 0.922 sum 1.337 -19.908 -3.267 20.219 Atomic orbital electron populations 1.69649 1.05165 1.26063 1.56868 1.24788 0.95541 0.97871 1.02475 0.86236 0.78527 0.83319 0.77883 1.21168 1.21630 1.21158 1.19218 0.91071 0.83892 1.43697 0.90974 1.42186 1.05753 0.99400 1.87006 1.20937 0.95270 0.85428 0.92531 0.91365 1.23900 1.00767 0.99996 0.95786 1.22668 0.99855 0.79437 0.96041 0.86808 1.46144 1.39878 1.10065 1.40486 1.20541 0.80195 0.90422 0.79792 1.90752 1.43262 1.55382 1.51965 1.21735 1.01005 0.94872 0.99738 1.22241 0.94875 0.95108 1.00272 0.87330 1.24115 0.87233 0.88233 1.01326 1.86794 1.41923 1.35390 1.62745 1.23123 0.89139 0.78737 0.76343 1.90723 1.76065 1.36058 1.31494 1.23173 0.95445 0.97827 1.05860 1.24346 0.96142 0.99755 1.02402 0.93257 0.77971 0.90865 0.90348 0.76956 0.87791 0.88230 0.88644 0.87405 0.86866 0.86494 0.91334 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.74 13.06 55.49 0.72 -27.02 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.25 -6.70 9.97 -15.06 -0.15 -6.85 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.71 -17.06 5.31 -52.54 -0.28 -17.34 16 10 C 0.17 3.16 4.57 -67.02 -0.31 2.85 16 11 H 0.07 1.24 8.10 -51.93 -0.42 0.81 16 12 C -0.16 -2.36 7.57 -25.92 -0.20 -2.56 16 13 C 0.12 1.82 4.12 -67.11 -0.28 1.54 16 14 H 0.11 2.08 7.46 -51.93 -0.39 1.69 16 15 N -0.72 -7.47 5.36 -53.02 -0.28 -7.75 16 16 C 0.50 5.42 7.60 -10.99 -0.08 5.34 16 17 O -0.54 -8.21 14.66 5.56 0.08 -8.13 16 18 C -0.13 -0.76 4.98 -27.89 -0.14 -0.90 16 19 C -0.11 -0.73 2.71 -89.05 -0.24 -0.97 16 20 H 0.11 0.84 8.05 -51.93 -0.42 0.43 16 21 C 0.06 0.57 6.47 37.82 0.24 0.81 16 22 O -0.35 -3.86 10.95 -38.26 -0.42 -4.28 16 23 C 0.49 5.11 8.62 36.48 0.31 5.42 16 24 O -0.46 -6.46 18.00 -18.37 -0.33 -6.79 16 25 C -0.18 -1.09 6.51 -26.50 -0.17 -1.26 16 26 C -0.18 -2.98 7.68 -25.82 -0.20 -3.18 16 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.39 10.01 7.90 -40.82 -0.32 9.69 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.08 0.87 8.12 -51.93 -0.42 0.45 16 31 H 0.40 2.76 8.73 -40.82 -0.36 2.41 16 32 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 0.35 8.10 -51.93 -0.42 -0.07 16 34 H 0.10 0.74 7.72 -51.93 -0.40 0.34 16 35 H 0.11 1.07 7.99 -51.93 -0.41 0.65 16 36 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.12 0.43 7.91 -51.93 -0.41 0.02 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 331.45 15.07 4.99 4.99 Total: -1.00 -34.19 331.45 -7.47 -41.65 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.63 Total: 7.83 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -1.30 Total: -0.14 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: 0.16 Total: -52.10 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.67 Total: -19.20 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.19 -7.47 -41.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020074336.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.340 kcal (2) G-P(sol) polarization free energy of solvation -34.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds