Wall clock time and date at job start Tue Mar 31 2020 03:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 117.00171 * 2 1 4 4 O 1.20825 * 119.99717 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00076 * 179.97438 * 3 2 1 6 6 H 1.09007 * 115.56261 * 62.16841 * 5 3 2 7 7 C 1.53080 * 117.51505 * 207.86745 * 5 3 2 8 8 C 1.52999 * 117.50455 * 276.47802 * 5 3 2 9 9 H 1.08999 * 117.50187 * 144.99122 * 8 5 3 10 10 C 1.50710 * 117.49480 * 0.02562 * 8 5 3 11 11 O 1.21283 * 119.99732 * 313.38257 * 10 8 5 12 12 N 1.34770 * 119.99941 * 133.38149 * 10 8 5 13 13 C 1.46504 * 120.00097 * 179.97438 * 12 10 8 14 14 H 1.09004 * 112.90158 * 336.25658 * 13 12 10 15 15 C 1.53775 * 113.61416 * 107.50154 * 13 12 10 16 16 C 1.53789 * 87.07991 * 139.98582 * 15 13 12 17 17 H 1.08998 * 113.69108 * 89.12726 * 16 15 13 18 18 N 1.46498 * 113.61046 * 220.01898 * 16 15 13 19 19 C 1.36937 * 120.00101 * 252.49443 * 18 16 15 20 20 H 1.08007 * 119.99508 * 0.02562 * 19 18 16 21 21 C 1.38805 * 120.00331 * 180.02562 * 19 18 16 22 22 N 1.31621 * 119.99995 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00252 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47249 * 179.97438 * 23 21 19 25 25 H 1.48497 * 109.47111 * 300.00181 * 23 21 19 26 26 H 1.48506 * 109.46857 * 60.00288 * 23 21 19 27 27 C 1.53780 * 87.07906 * 334.56586 * 16 15 13 28 28 H 1.08999 * 109.47324 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47570 * 300.00305 * 1 2 3 30 30 H 1.09003 * 109.47044 * 60.00396 * 1 2 3 31 31 H 1.08999 * 117.51066 * 0.02562 * 7 5 3 32 32 H 1.09000 * 117.51593 * 214.95487 * 7 5 3 33 33 H 0.96999 * 120.00220 * 0.02562 * 12 10 8 34 34 H 1.09002 * 113.61693 * 25.43752 * 15 13 12 35 35 H 1.09001 * 113.61727 * 254.53094 * 15 13 12 36 36 H 0.96999 * 120.00460 * 72.49751 * 18 16 15 37 37 H 0.97000 * 120.00560 * 180.02562 * 22 21 19 38 38 H 1.09004 * 113.61252 * 139.97860 * 27 16 15 39 39 H 1.08991 * 113.61788 * 270.88747 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0604 0.8408 -0.8687 7 6 4.2095 2.5105 0.6352 8 6 4.2794 1.1591 1.3493 9 1 5.2422 0.6486 1.3674 10 6 3.4229 0.9745 2.5756 11 8 2.4459 1.6731 2.7436 12 7 3.7428 0.0330 3.4853 13 6 2.9106 -0.1461 4.6777 14 1 2.3432 0.7477 4.9372 15 6 2.0617 -1.4280 4.6494 16 6 2.3932 -1.5865 6.1428 17 1 1.6851 -1.0871 6.8040 18 7 2.6641 -2.9703 6.5401 19 6 1.7481 -3.6593 7.2893 20 1 0.8258 -3.1826 7.5870 21 6 2.0049 -4.9703 7.6662 22 7 3.1286 -5.5514 7.3030 23 14 0.7557 -5.9100 8.6889 24 1 1.2640 -7.2795 8.9558 25 1 0.5375 -5.2028 9.9763 26 1 -0.5280 -5.9949 7.9470 27 6 3.6636 -0.7648 5.8672 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.5441 3.2662 1.0526 32 1 5.1264 2.8890 0.1835 33 1 4.5244 -0.5255 3.3511 34 1 2.4808 -2.2156 4.0232 35 1 1.0047 -1.2476 4.4536 36 1 3.4922 -3.3986 6.2724 37 1 3.3080 -6.4677 7.5660 38 1 3.8998 -0.0489 6.6545 39 1 4.5206 -1.3710 5.5738 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021888557.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:29 Heat of formation + Delta-G solvation = -60.250701 kcal Electronic energy + Delta-G solvation = -22022.119556 eV Core-core repulsion = 18546.006585 eV Total energy + Delta-G solvation = -3476.112971 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.95702 -39.76684 -38.29616 -36.79367 -35.88333 -34.10886 -32.70812 -29.92028 -28.27504 -25.80270 -25.14181 -24.59916 -23.84316 -21.75591 -20.82108 -20.22115 -19.25149 -18.22490 -17.17048 -17.12143 -16.69951 -16.31453 -15.75307 -15.12948 -14.80452 -14.56164 -14.37725 -14.07462 -13.31883 -13.15295 -13.04676 -12.89283 -12.36229 -12.20716 -12.12027 -11.93610 -11.28804 -11.13059 -11.06116 -10.90434 -10.83952 -10.65718 -10.54632 -10.51453 -10.34993 -10.10081 -9.81588 -9.60728 -8.92670 -8.78247 -7.00566 -5.81837 -3.10817 1.93036 2.40159 2.53320 3.13774 3.42112 3.46677 3.47533 3.53680 4.25490 4.33390 4.48511 4.57385 4.70360 4.85699 5.01355 5.04597 5.15789 5.21131 5.25597 5.31319 5.37084 5.45767 5.49898 5.73449 5.84490 5.92428 6.09517 6.22957 6.29177 6.31608 6.47538 6.59222 6.71962 7.03987 7.57405 7.66721 7.67854 8.22524 8.36684 9.48022 10.04397 10.39086 11.40501 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.025232 B = 0.003417 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.423200 B = 8192.905280 C = 8777.030573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.354 6.354 3 C 0.493 3.507 4 O -0.491 6.491 5 C -0.135 4.135 6 H 0.149 0.851 7 C -0.113 4.113 8 C -0.169 4.169 9 H 0.136 0.864 10 C 0.533 3.467 11 O -0.537 6.537 12 N -0.704 5.704 13 C 0.117 3.883 14 H 0.109 0.891 15 C -0.174 4.174 16 C 0.169 3.831 17 H 0.080 0.920 18 N -0.710 5.710 19 C -0.246 4.246 20 H 0.072 0.928 21 C -0.011 4.011 22 N -0.933 5.933 23 Si 0.908 3.092 24 H -0.291 1.291 25 H -0.285 1.285 26 H -0.285 1.285 27 C -0.158 4.158 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.401 0.599 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.385 0.615 37 H 0.256 0.744 38 H 0.067 0.933 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.155 13.119 -15.569 20.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.271 6.271 3 C 0.335 3.665 4 O -0.377 6.377 5 C -0.155 4.155 6 H 0.166 0.834 7 C -0.150 4.150 8 C -0.190 4.190 9 H 0.153 0.847 10 C 0.318 3.682 11 O -0.414 6.414 12 N -0.353 5.353 13 C 0.012 3.988 14 H 0.127 0.873 15 C -0.217 4.217 16 C 0.056 3.944 17 H 0.098 0.902 18 N -0.348 5.348 19 C -0.377 4.377 20 H 0.090 0.910 21 C -0.207 4.207 22 N -0.581 5.581 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.212 1.212 26 H -0.212 1.212 27 C -0.198 4.198 28 H 0.120 0.880 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.235 0.765 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.219 0.781 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.061 13.799 -15.281 20.816 hybrid contribution -0.110 -1.140 0.293 1.182 sum 2.951 12.659 -14.988 19.840 Atomic orbital electron populations 1.23274 0.75903 1.03817 1.02529 1.86468 1.23687 1.32950 1.83972 1.22298 0.90120 0.81660 0.72467 1.90655 1.66499 1.36425 1.44088 1.21736 0.88935 1.06719 0.98091 0.83377 1.23158 1.02489 0.90224 0.99125 1.22469 1.01280 1.04476 0.90801 0.84659 1.19545 0.84898 0.80231 0.83480 1.90758 1.27858 1.45978 1.76837 1.45939 1.30515 1.36451 1.22434 1.22530 0.93574 0.98731 0.83940 0.87348 1.24326 0.99207 0.95910 1.02233 1.21349 0.93970 0.86823 0.92269 0.90244 1.42341 1.22171 1.08157 1.62094 1.19275 0.98774 0.94612 1.25027 0.91049 1.24754 0.97510 0.97210 1.01275 1.69644 1.24418 1.13526 1.50537 0.86255 0.80598 0.79091 0.80172 1.21665 1.21178 1.21197 1.23863 0.99931 0.99515 0.96470 0.87972 0.91580 0.92097 0.86327 0.86202 0.76456 0.90118 0.92369 0.78084 0.93384 0.91470 0.89902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.50 16 2 O -0.35 -4.76 10.57 -39.25 -0.41 -5.17 16 3 C 0.49 6.72 5.75 36.00 0.21 6.93 16 4 O -0.49 -8.05 16.32 -18.96 -0.31 -8.36 16 5 C -0.14 -1.28 6.29 -91.74 -0.58 -1.86 16 6 H 0.15 0.88 8.14 -51.93 -0.42 0.46 16 7 C -0.11 -0.96 9.57 -26.69 -0.26 -1.21 16 8 C -0.17 -1.56 6.19 -91.77 -0.57 -2.13 16 9 H 0.14 0.77 8.14 -51.93 -0.42 0.35 16 10 C 0.53 7.23 7.12 -10.98 -0.08 7.15 16 11 O -0.54 -9.47 14.72 5.55 0.08 -9.38 16 12 N -0.70 -8.93 5.35 -53.01 -0.28 -9.21 16 13 C 0.12 1.75 4.24 -67.12 -0.28 1.47 16 14 H 0.11 1.73 7.47 -51.93 -0.39 1.34 16 15 C -0.17 -3.06 7.68 -25.92 -0.20 -3.26 16 16 C 0.17 3.26 4.48 -67.12 -0.30 2.96 16 17 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 18 N -0.71 -17.36 5.40 -52.64 -0.28 -17.65 16 19 C -0.25 -6.74 9.97 -15.06 -0.15 -6.89 16 20 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 21 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 22 N -0.93 -27.68 13.06 55.49 0.72 -26.96 16 23 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 C -0.16 -2.44 7.58 -25.92 -0.20 -2.64 16 28 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.83 8.13 -51.93 -0.42 0.40 16 30 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 31 H 0.12 1.33 7.64 -51.93 -0.40 0.94 16 32 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.40 4.04 8.73 -40.82 -0.36 3.68 16 34 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.39 9.90 7.92 -40.82 -0.32 9.57 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.08 1.25 8.09 -51.93 -0.42 0.83 16 LS Contribution 338.57 15.07 5.10 5.10 Total: -1.00 -34.79 338.57 -7.49 -42.29 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -5.66 Total: 10.63 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -1.43 Total: 1.60 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.16 Total: -53.82 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.64 Total: -22.91 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.79 -7.49 -42.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021888557.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.963 kcal (2) G-P(sol) polarization free energy of solvation -34.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds