Wall clock time and date at job start Tue Mar 31 2020 03:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 117.00171 * 2 1 4 4 O 1.20825 * 119.99717 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00076 * 179.97438 * 3 2 1 6 6 H 1.09007 * 115.56261 * 62.16841 * 5 3 2 7 7 C 1.53080 * 117.51505 * 207.86745 * 5 3 2 8 8 C 1.52999 * 117.50455 * 276.47802 * 5 3 2 9 9 H 1.08999 * 117.50187 * 144.99122 * 8 5 3 10 10 C 1.50710 * 117.49480 * 0.02562 * 8 5 3 11 11 O 1.21283 * 119.99732 * 313.38257 * 10 8 5 12 12 N 1.34770 * 119.99941 * 133.38149 * 10 8 5 13 13 C 1.46504 * 120.00097 * 179.97438 * 12 10 8 14 14 H 1.09004 * 112.90158 * 336.25658 * 13 12 10 15 15 C 1.53775 * 113.61416 * 107.50154 * 13 12 10 16 16 C 1.53789 * 87.07991 * 139.98582 * 15 13 12 17 17 H 1.08998 * 113.69108 * 89.12726 * 16 15 13 18 18 N 1.46498 * 113.61046 * 220.01898 * 16 15 13 19 19 C 1.36937 * 120.00101 * 252.49443 * 18 16 15 20 20 H 1.08007 * 119.99508 * 0.02562 * 19 18 16 21 21 C 1.38805 * 120.00331 * 180.02562 * 19 18 16 22 22 N 1.31621 * 119.99995 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00252 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47249 * 179.97438 * 23 21 19 25 25 H 1.48497 * 109.47111 * 300.00181 * 23 21 19 26 26 H 1.48506 * 109.46857 * 60.00288 * 23 21 19 27 27 C 1.53780 * 87.07906 * 334.56586 * 16 15 13 28 28 H 1.08999 * 109.47324 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47570 * 300.00305 * 1 2 3 30 30 H 1.09003 * 109.47044 * 60.00396 * 1 2 3 31 31 H 1.08999 * 117.51066 * 0.02562 * 7 5 3 32 32 H 1.09000 * 117.51593 * 214.95487 * 7 5 3 33 33 H 0.96999 * 120.00220 * 0.02562 * 12 10 8 34 34 H 1.09002 * 113.61693 * 25.43752 * 15 13 12 35 35 H 1.09001 * 113.61727 * 254.53094 * 15 13 12 36 36 H 0.96999 * 120.00460 * 72.49751 * 18 16 15 37 37 H 0.97000 * 120.00560 * 180.02562 * 22 21 19 38 38 H 1.09004 * 113.61252 * 139.97860 * 27 16 15 39 39 H 1.08991 * 113.61788 * 270.88747 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0604 0.8408 -0.8687 7 6 4.2095 2.5105 0.6352 8 6 4.2794 1.1591 1.3493 9 1 5.2422 0.6486 1.3674 10 6 3.4229 0.9745 2.5756 11 8 2.4459 1.6731 2.7436 12 7 3.7428 0.0330 3.4853 13 6 2.9106 -0.1461 4.6777 14 1 2.3432 0.7477 4.9372 15 6 2.0617 -1.4280 4.6494 16 6 2.3932 -1.5865 6.1428 17 1 1.6851 -1.0871 6.8040 18 7 2.6641 -2.9703 6.5401 19 6 1.7481 -3.6593 7.2893 20 1 0.8258 -3.1826 7.5870 21 6 2.0049 -4.9703 7.6662 22 7 3.1286 -5.5514 7.3030 23 14 0.7557 -5.9100 8.6889 24 1 1.2640 -7.2795 8.9558 25 1 0.5375 -5.2028 9.9763 26 1 -0.5280 -5.9949 7.9470 27 6 3.6636 -0.7648 5.8672 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.5441 3.2662 1.0526 32 1 5.1264 2.8890 0.1835 33 1 4.5244 -0.5255 3.3511 34 1 2.4808 -2.2156 4.0232 35 1 1.0047 -1.2476 4.4536 36 1 3.4922 -3.3986 6.2724 37 1 3.3080 -6.4677 7.5660 38 1 3.8998 -0.0489 6.6545 39 1 4.5206 -1.3710 5.5738 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021888557.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:28 Heat of formation + Delta-G solvation = -85.096434 kcal Electronic energy + Delta-G solvation = -22023.196948 eV Core-core repulsion = 18546.006585 eV Total energy + Delta-G solvation = -3477.190362 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.94253 -40.92592 -39.57228 -37.81787 -36.85749 -35.77534 -34.25370 -31.82423 -29.19896 -27.04193 -26.54054 -25.86870 -25.14140 -23.11079 -21.74824 -21.32630 -20.59391 -19.32550 -19.01806 -18.16342 -17.78233 -17.46163 -16.94406 -16.28519 -16.16829 -15.91240 -15.56860 -15.34364 -14.93290 -14.57724 -14.21833 -14.09860 -13.65029 -13.32137 -13.21065 -13.16118 -12.93119 -12.80315 -12.28547 -12.21383 -12.09907 -11.89795 -11.86433 -11.77584 -11.68526 -11.53460 -11.47975 -10.94065 -10.83929 -10.01204 -8.99008 -7.95311 -5.23419 0.95906 1.44375 1.48312 1.50419 1.56494 1.63531 2.15198 2.57171 2.76411 3.36077 3.50436 3.56364 3.68570 3.72475 3.84413 3.87108 3.95507 4.17682 4.21836 4.24120 4.28141 4.30077 4.58656 4.64961 4.73611 4.82865 4.87145 4.89341 5.05809 5.12726 5.13506 5.35002 5.35990 5.50322 5.66027 6.27068 6.55564 6.67093 7.21506 7.33935 8.08922 8.33096 9.27492 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.025232 B = 0.003417 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.423200 B = 8192.905280 C = 8777.030573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.364 6.364 3 C 0.481 3.519 4 O -0.531 6.531 5 C -0.139 4.139 6 H 0.193 0.807 7 C -0.104 4.104 8 C -0.164 4.164 9 H 0.183 0.817 10 C 0.524 3.476 11 O -0.585 6.585 12 N -0.695 5.695 13 C 0.135 3.865 14 H 0.100 0.900 15 C -0.168 4.168 16 C 0.150 3.850 17 H 0.076 0.924 18 N -0.722 5.722 19 C -0.249 4.249 20 H 0.074 0.926 21 C -0.071 4.071 22 N -0.967 5.967 23 Si 0.970 3.030 24 H -0.294 1.294 25 H -0.278 1.278 26 H -0.280 1.280 27 C -0.136 4.136 28 H 0.126 0.874 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.166 0.834 33 H 0.417 0.583 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.377 0.623 37 H 0.252 0.748 38 H 0.082 0.918 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.741 13.443 -16.609 22.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.280 6.280 3 C 0.325 3.675 4 O -0.419 6.419 5 C -0.158 4.158 6 H 0.210 0.790 7 C -0.141 4.141 8 C -0.185 4.185 9 H 0.200 0.800 10 C 0.311 3.689 11 O -0.466 6.466 12 N -0.345 5.345 13 C 0.029 3.971 14 H 0.118 0.882 15 C -0.210 4.210 16 C 0.039 3.961 17 H 0.094 0.906 18 N -0.360 5.360 19 C -0.381 4.381 20 H 0.092 0.908 21 C -0.263 4.263 22 N -0.617 5.617 23 Si 0.799 3.201 24 H -0.220 1.220 25 H -0.204 1.204 26 H -0.207 1.207 27 C -0.176 4.176 28 H 0.145 0.855 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.184 0.816 33 H 0.255 0.745 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.209 0.791 37 H 0.061 0.939 38 H 0.100 0.900 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.661 14.149 -16.339 22.111 hybrid contribution -0.683 -1.161 0.592 1.471 sum 3.978 12.988 -15.748 20.797 Atomic orbital electron populations 1.23431 0.75323 1.05282 1.02020 1.86472 1.24557 1.33236 1.83756 1.23292 0.92036 0.81036 0.71104 1.90631 1.67801 1.37525 1.45971 1.22073 0.86110 1.07960 0.99652 0.79021 1.23301 1.03366 0.89073 0.98402 1.22603 1.01973 1.05716 0.88162 0.79953 1.20379 0.84704 0.79251 0.84530 1.90749 1.30148 1.47660 1.78009 1.45798 1.30556 1.36603 1.21529 1.22116 0.93122 0.96994 0.84903 0.88234 1.24149 0.99124 0.97213 1.00507 1.21653 0.96477 0.85028 0.92950 0.90643 1.42463 1.21411 1.09911 1.62203 1.19652 0.99167 0.94972 1.24320 0.90825 1.25503 0.99412 0.98271 1.03124 1.69784 1.26173 1.13513 1.52240 0.85269 0.78473 0.77474 0.78889 1.22042 1.20406 1.20673 1.23649 0.98280 0.98791 0.96853 0.85547 0.93744 0.90993 0.89803 0.81599 0.74540 0.90813 0.93450 0.79079 0.93927 0.89958 0.88947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.56 113.37 1.20 1.94 16 2 O -0.36 -9.60 10.57 -51.40 -0.54 -10.14 16 3 C 0.48 12.86 5.75 71.23 0.41 13.26 16 4 O -0.53 -17.83 16.32 22.17 0.36 -17.47 16 5 C -0.14 -2.21 6.29 -11.52 -0.07 -2.29 16 6 H 0.19 1.33 8.14 -2.38 -0.02 1.31 16 7 C -0.10 -1.46 9.57 30.62 0.29 -1.17 16 8 C -0.16 -2.45 6.19 -11.54 -0.07 -2.52 16 9 H 0.18 1.00 8.14 -2.39 -0.02 0.98 16 10 C 0.52 13.36 7.12 87.66 0.62 13.99 16 11 O -0.59 -20.75 14.72 -3.04 -0.04 -20.80 16 12 N -0.69 -16.19 5.35 -440.03 -2.36 -18.55 16 13 C 0.13 3.89 4.24 45.52 0.19 4.08 16 14 H 0.10 3.14 7.47 -2.38 -0.02 3.13 16 15 C -0.17 -5.85 7.68 31.12 0.24 -5.61 16 16 C 0.15 5.74 4.48 45.52 0.20 5.94 16 17 H 0.08 2.93 8.10 -2.39 -0.02 2.91 16 18 N -0.72 -35.42 5.40 -320.44 -1.73 -37.15 16 19 C -0.25 -13.71 9.97 84.03 0.84 -12.87 16 20 H 0.07 3.92 7.83 -2.91 -0.02 3.89 16 21 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 22 N -0.97 -57.88 13.06 21.65 0.28 -57.60 16 23 Si 0.97 45.64 29.55 68.60 2.03 47.67 16 24 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 26 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 27 C -0.14 -3.99 7.58 31.12 0.24 -3.76 16 28 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.04 1.18 8.13 -2.39 -0.02 1.16 16 30 H 0.07 1.43 8.13 -2.39 -0.02 1.41 16 31 H 0.08 1.84 7.64 -2.39 -0.02 1.82 16 32 H 0.17 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.42 7.08 8.73 -92.71 -0.81 6.27 16 34 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.38 19.47 7.92 -92.71 -0.73 18.73 16 37 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 38 H 0.08 2.20 8.14 -2.39 -0.02 2.19 16 39 H 0.09 2.58 8.09 -2.39 -0.02 2.56 16 Total: -1.00 -78.39 338.57 2.09 -76.30 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: -0.47 Total: 30.26 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 4.56 Total: 7.48 kcal Atomic # 7 Polarization: -109.49 SS G_CDS: -3.80 Total: -113.30 kcal Atomic # 8 Polarization: -48.18 SS G_CDS: -0.23 Total: -48.41 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -78.39 2.09 -76.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021888557.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.796 kcal (2) G-P(sol) polarization free energy of solvation -78.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds