Wall clock time and date at job start Tue Mar 31 2020 03:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86793 * 119.99691 * 2 1 4 4 H 1.48499 * 109.47425 * 269.99670 * 3 2 1 5 5 H 1.48500 * 109.47540 * 29.99887 * 3 2 1 6 6 H 1.48507 * 109.47112 * 149.99563 * 3 2 1 7 7 C 1.38815 * 119.99911 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99489 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00005 * 0.02562 * 7 2 1 10 10 C 1.47420 * 125.64938 * 346.40803 * 9 7 2 11 11 C 1.54909 * 104.83052 * 204.16166 * 10 9 7 12 12 C 1.55158 * 101.58527 * 322.99242 * 11 10 9 13 13 C 1.47022 * 125.64387 * 166.45106 * 9 7 2 14 14 H 1.08995 * 109.88462 * 59.48589 * 13 9 7 15 15 C 1.52999 * 109.88409 * 298.32159 * 13 9 7 16 16 N 1.46501 * 109.47464 * 177.58169 * 15 13 9 17 17 C 1.34774 * 120.00083 * 184.62718 * 16 15 13 18 18 O 1.21273 * 120.00324 * 359.97438 * 17 16 15 19 19 C 1.50707 * 119.99578 * 179.97438 * 17 16 15 20 20 H 1.09003 * 110.49197 * 321.24503 * 19 17 16 21 21 C 1.54104 * 110.54884 * 84.10399 * 19 17 16 22 22 N 1.47054 * 103.86010 * 118.59365 * 21 19 17 23 23 C 1.33947 * 109.17831 * 359.97438 * 22 21 19 24 24 O 1.21587 * 123.03833 * 179.97438 * 23 22 21 25 25 N 1.33946 * 113.91887 * 0.02562 * 23 22 21 26 26 H 0.96998 * 120.00160 * 0.02562 * 1 2 3 27 27 H 1.08999 * 110.36415 * 85.32986 * 10 9 7 28 28 H 1.08994 * 110.46095 * 323.05171 * 10 9 7 29 29 H 1.08996 * 111.00546 * 204.91521 * 11 10 9 30 30 H 1.09007 * 111.03433 * 81.08268 * 11 10 9 31 31 H 1.09000 * 110.71572 * 153.85821 * 12 11 10 32 32 H 1.08995 * 110.72147 * 277.13751 * 12 11 10 33 33 H 1.09005 * 109.47289 * 297.57871 * 15 13 9 34 34 H 1.08996 * 109.47210 * 57.57959 * 15 13 9 35 35 H 0.97004 * 119.99789 * 4.62684 * 16 15 13 36 36 H 1.08999 * 110.54676 * 237.18561 * 21 19 17 37 37 H 1.09003 * 110.54770 * 359.97438 * 21 19 17 38 38 H 0.97000 * 125.40484 * 180.02562 * 22 21 19 39 39 H 0.97004 * 125.40544 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7002 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1125 -2.5499 0.2815 11 6 -0.2596 -4.0139 0.7662 12 6 0.7672 -4.7460 -0.1378 13 6 1.9032 -3.7109 -0.2789 14 1 2.6945 -3.9289 0.4383 15 6 2.4634 -3.7440 -1.7022 16 7 3.0877 -5.0458 -1.9512 17 6 3.7336 -5.2724 -3.1122 18 8 3.7976 -4.3988 -3.9510 19 6 4.3762 -6.6113 -3.3680 20 1 4.8381 -6.9931 -2.4575 21 6 3.3401 -7.6131 -3.9138 22 7 3.8602 -7.9690 -5.2425 23 6 5.0020 -7.3035 -5.4608 24 8 5.6467 -7.4118 -6.4860 25 7 5.3697 -6.5088 -4.4473 26 1 -0.4850 0.8400 -0.0004 27 1 -0.6964 -2.3900 -0.6248 28 1 -0.4283 -1.8582 1.0624 29 1 -1.2694 -4.3843 0.5897 30 1 0.0101 -4.1067 1.8183 31 1 1.1297 -5.6527 0.3465 32 1 0.3309 -4.9747 -1.1101 33 1 1.6539 -3.5870 -2.4151 34 1 3.2076 -2.9561 -1.8182 35 1 3.0361 -5.7446 -1.2805 36 1 3.2871 -8.4947 -3.2750 37 1 2.3608 -7.1422 -3.9993 38 1 3.4423 -8.5869 -5.8625 39 1 6.1652 -5.9540 -4.4282 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028111925.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:10 Heat of formation + Delta-G solvation = -25.397449 kcal Electronic energy + Delta-G solvation = -22365.190220 eV Core-core repulsion = 18922.881351 eV Total energy + Delta-G solvation = -3442.308869 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.45469 -39.28035 -37.72126 -36.33108 -34.44542 -33.21833 -32.55679 -30.28252 -29.45226 -28.32839 -25.17154 -24.42454 -23.27352 -21.98188 -20.73708 -20.17335 -19.62098 -18.18960 -17.74111 -16.76418 -16.54628 -15.95417 -15.63009 -15.24128 -14.92655 -14.54676 -14.27909 -14.05346 -13.88410 -13.65930 -13.18115 -13.16486 -12.49582 -12.17115 -11.95684 -11.86524 -11.42543 -11.00199 -10.84654 -10.51049 -10.31220 -10.29629 -10.14177 -9.97028 -9.90793 -9.76972 -9.60241 -9.05115 -8.86880 -8.64624 -6.91896 -5.82534 -3.19622 2.36411 2.64628 2.87758 3.21643 3.37128 3.42951 3.43494 3.79140 4.00308 4.41186 4.51514 4.56502 4.93063 5.13580 5.25357 5.29996 5.34641 5.41778 5.54613 5.71728 5.92773 6.03916 6.13276 6.36996 6.43480 6.47980 6.58710 6.69736 6.75137 6.91566 6.94970 7.13384 7.45175 7.52755 7.57289 7.73402 8.18279 8.23796 8.42168 9.11100 9.71719 10.37643 11.29002 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.023289 B = 0.003898 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.979582 B = 7180.944989 C = 8090.098647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.000 4.000 3 Si 0.911 3.089 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.236 4.236 8 H 0.076 0.924 9 N -0.589 5.589 10 C 0.171 3.829 11 C -0.149 4.149 12 C -0.128 4.128 13 C 0.152 3.848 14 H 0.039 0.961 15 C 0.108 3.892 16 N -0.716 5.716 17 C 0.493 3.507 18 O -0.522 6.522 19 C 0.102 3.898 20 H 0.115 0.885 21 C 0.105 3.895 22 N -0.739 5.739 23 C 0.706 3.294 24 O -0.587 6.587 25 N -0.714 5.714 26 H 0.254 0.746 27 H 0.025 0.975 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.397 0.603 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.432 0.568 39 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.359 -17.754 -0.446 18.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.197 4.197 3 Si 0.741 3.259 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.365 4.365 8 H 0.094 0.906 9 N -0.313 5.313 10 C 0.046 3.954 11 C -0.187 4.187 12 C -0.166 4.166 13 C 0.043 3.957 14 H 0.056 0.944 15 C -0.017 4.017 16 N -0.368 5.368 17 C 0.275 3.725 18 O -0.397 6.397 19 C -0.009 4.009 20 H 0.133 0.867 21 C -0.021 4.021 22 N -0.403 5.403 23 C 0.405 3.595 24 O -0.465 6.465 25 N -0.376 5.376 26 H 0.065 0.935 27 H 0.043 0.957 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.231 0.769 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.274 0.726 39 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 3.652 -16.873 -1.540 17.332 hybrid contribution 0.423 0.686 0.143 0.818 sum 4.074 -16.187 -1.397 16.750 Atomic orbital electron populations 1.69931 1.05034 1.25393 1.55754 1.24898 0.95680 0.97900 1.01261 0.86146 0.78716 0.83293 0.77764 1.21358 1.21596 1.20546 1.18983 0.90410 0.82176 1.44894 0.90612 1.44495 1.05780 1.00754 1.80275 1.21480 0.84620 0.90363 0.98926 1.23005 0.97467 0.99560 0.98695 1.22628 0.97121 0.97006 0.99809 1.21139 0.94436 0.88130 0.91978 0.94377 1.22323 0.97416 0.82505 0.99471 1.46156 1.55381 1.17393 1.17886 1.20683 0.79809 0.89288 0.82717 1.90781 1.58694 1.45532 1.44727 1.21909 0.90673 0.94405 0.93882 0.86700 1.22253 0.97304 0.97658 0.84867 1.45036 1.25740 1.49690 1.19821 1.15851 0.81411 0.79081 0.83132 1.90997 1.57790 1.70133 1.27575 1.44820 1.26909 1.48676 1.17197 0.93543 0.95706 0.90705 0.92311 0.92258 0.92284 0.91788 0.91808 0.91055 0.76932 0.88623 0.89353 0.72635 0.72335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.00 10.53 55.49 0.58 -25.41 16 2 C 0.00 0.00 5.47 -17.43 -0.10 -0.10 16 3 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.24 -6.27 9.77 -15.06 -0.15 -6.41 16 8 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.59 -13.89 3.13 -162.58 -0.51 -14.39 16 10 C 0.17 3.87 5.43 -2.53 -0.01 3.86 16 11 C -0.15 -2.49 7.08 -24.58 -0.17 -2.67 16 12 C -0.13 -1.84 5.96 -24.89 -0.15 -1.99 16 13 C 0.15 2.71 3.25 -66.95 -0.22 2.49 16 14 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 15 C 0.11 1.87 5.07 -4.04 -0.02 1.85 16 16 N -0.72 -8.58 5.38 -60.29 -0.32 -8.90 16 17 C 0.49 6.35 6.93 -10.98 -0.08 6.28 16 18 O -0.52 -9.66 16.60 5.56 0.09 -9.56 16 19 C 0.10 0.87 4.17 -68.20 -0.28 0.59 16 20 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 21 C 0.11 0.69 7.70 -3.16 -0.02 0.67 16 22 N -0.74 -6.73 6.37 -64.70 -0.41 -7.14 16 23 C 0.71 9.30 8.92 -88.40 -0.79 8.51 16 24 O -0.59 -10.24 18.05 5.29 0.10 -10.14 16 25 N -0.71 -7.97 5.63 -59.33 -0.33 -8.31 16 26 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.02 0.62 8.08 -51.93 -0.42 0.20 16 28 H 0.07 1.91 6.85 -51.93 -0.36 1.56 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.90 7.81 -51.93 -0.41 0.49 16 33 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 34 H 0.07 1.46 7.92 -51.93 -0.41 1.05 16 35 H 0.40 3.25 8.17 -40.82 -0.33 2.92 16 36 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.09 0.61 7.72 -51.93 -0.40 0.21 16 38 H 0.43 3.05 8.96 -40.82 -0.37 2.69 16 39 H 0.43 4.63 8.96 -40.82 -0.37 4.27 16 LS Contribution 323.87 15.07 4.88 4.88 Total: -1.00 -35.94 323.87 -8.50 -44.44 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -5.56 Total: 4.80 kcal Atomic # 6 Polarization: 15.06 SS G_CDS: -1.99 Total: 13.07 kcal Atomic # 7 Polarization: -63.17 SS G_CDS: -0.99 Total: -64.16 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: 0.19 Total: -19.70 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.94 -8.50 -44.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028111925.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.040 kcal (2) G-P(sol) polarization free energy of solvation -35.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds