Wall clock time and date at job start Tue Mar 31 2020 03:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86793 * 119.99691 * 2 1 4 4 H 1.48499 * 109.47425 * 269.99670 * 3 2 1 5 5 H 1.48500 * 109.47540 * 29.99887 * 3 2 1 6 6 H 1.48507 * 109.47112 * 149.99563 * 3 2 1 7 7 C 1.38815 * 119.99911 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99489 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00005 * 0.02562 * 7 2 1 10 10 C 1.47420 * 125.64938 * 346.40803 * 9 7 2 11 11 C 1.54909 * 104.83052 * 204.16166 * 10 9 7 12 12 C 1.55158 * 101.58527 * 322.99242 * 11 10 9 13 13 C 1.47022 * 125.64387 * 166.45106 * 9 7 2 14 14 H 1.08995 * 109.88462 * 59.48589 * 13 9 7 15 15 C 1.52999 * 109.88409 * 298.32159 * 13 9 7 16 16 N 1.46501 * 109.47464 * 177.58169 * 15 13 9 17 17 C 1.34774 * 120.00083 * 184.62718 * 16 15 13 18 18 O 1.21273 * 120.00324 * 359.97438 * 17 16 15 19 19 C 1.50707 * 119.99578 * 179.97438 * 17 16 15 20 20 H 1.09003 * 110.49197 * 321.24503 * 19 17 16 21 21 C 1.54104 * 110.54884 * 84.10399 * 19 17 16 22 22 N 1.47054 * 103.86010 * 118.59365 * 21 19 17 23 23 C 1.33947 * 109.17831 * 359.97438 * 22 21 19 24 24 O 1.21587 * 123.03833 * 179.97438 * 23 22 21 25 25 N 1.33946 * 113.91887 * 0.02562 * 23 22 21 26 26 H 0.96998 * 120.00160 * 0.02562 * 1 2 3 27 27 H 1.08999 * 110.36415 * 85.32986 * 10 9 7 28 28 H 1.08994 * 110.46095 * 323.05171 * 10 9 7 29 29 H 1.08996 * 111.00546 * 204.91521 * 11 10 9 30 30 H 1.09007 * 111.03433 * 81.08268 * 11 10 9 31 31 H 1.09000 * 110.71572 * 153.85821 * 12 11 10 32 32 H 1.08995 * 110.72147 * 277.13751 * 12 11 10 33 33 H 1.09005 * 109.47289 * 297.57871 * 15 13 9 34 34 H 1.08996 * 109.47210 * 57.57959 * 15 13 9 35 35 H 0.97004 * 119.99789 * 4.62684 * 16 15 13 36 36 H 1.08999 * 110.54676 * 237.18561 * 21 19 17 37 37 H 1.09003 * 110.54770 * 359.97438 * 21 19 17 38 38 H 0.97000 * 125.40484 * 180.02562 * 22 21 19 39 39 H 0.97004 * 125.40544 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7002 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1125 -2.5499 0.2815 11 6 -0.2596 -4.0139 0.7662 12 6 0.7672 -4.7460 -0.1378 13 6 1.9032 -3.7109 -0.2789 14 1 2.6945 -3.9289 0.4383 15 6 2.4634 -3.7440 -1.7022 16 7 3.0877 -5.0458 -1.9512 17 6 3.7336 -5.2724 -3.1122 18 8 3.7976 -4.3988 -3.9510 19 6 4.3762 -6.6113 -3.3680 20 1 4.8381 -6.9931 -2.4575 21 6 3.3401 -7.6131 -3.9138 22 7 3.8602 -7.9690 -5.2425 23 6 5.0020 -7.3035 -5.4608 24 8 5.6467 -7.4118 -6.4860 25 7 5.3697 -6.5088 -4.4473 26 1 -0.4850 0.8400 -0.0004 27 1 -0.6964 -2.3900 -0.6248 28 1 -0.4283 -1.8582 1.0624 29 1 -1.2694 -4.3843 0.5897 30 1 0.0101 -4.1067 1.8183 31 1 1.1297 -5.6527 0.3465 32 1 0.3309 -4.9747 -1.1101 33 1 1.6539 -3.5870 -2.4151 34 1 3.2076 -2.9561 -1.8182 35 1 3.0361 -5.7446 -1.2805 36 1 3.2871 -8.4947 -3.2750 37 1 2.3608 -7.1422 -3.9993 38 1 3.4423 -8.5869 -5.8625 39 1 6.1652 -5.9540 -4.4282 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028111925.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:08 Heat of formation + Delta-G solvation = -57.309924 kcal Electronic energy + Delta-G solvation = -22366.574049 eV Core-core repulsion = 18922.881351 eV Total energy + Delta-G solvation = -3443.692698 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.32638 -40.45095 -39.20866 -37.35814 -35.78960 -34.39163 -34.00516 -31.58877 -30.98780 -29.52367 -26.73362 -25.85831 -24.34032 -22.82757 -22.07980 -21.49146 -21.09632 -19.23189 -18.81920 -18.35763 -17.47074 -17.21703 -16.68920 -16.57140 -16.29936 -15.87743 -15.66690 -15.23044 -15.00491 -14.82432 -14.48508 -13.98681 -13.86985 -13.61903 -13.42401 -13.20465 -12.95538 -12.84509 -12.69854 -12.01398 -11.85930 -11.64424 -11.59672 -11.43544 -11.35802 -11.31560 -10.68999 -10.55659 -10.09627 -9.82476 -8.84881 -7.88575 -5.25300 1.41725 1.43376 1.45896 1.52829 1.72759 1.98207 2.22449 2.49124 3.07691 3.31336 3.34644 3.57381 3.83466 3.99946 4.02722 4.06344 4.32405 4.39253 4.48103 4.59641 4.70024 4.74057 4.79226 5.02171 5.06569 5.20605 5.26539 5.39139 5.49675 5.61254 5.70469 5.81728 5.89742 6.20974 6.24347 6.29379 6.60080 7.09882 7.26281 7.51504 7.78141 8.42357 9.21778 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.023289 B = 0.003898 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.979582 B = 7180.944989 C = 8090.098647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.059 4.059 3 Si 0.967 3.033 4 H -0.293 1.293 5 H -0.292 1.292 6 H -0.267 1.267 7 C -0.238 4.238 8 H 0.076 0.924 9 N -0.613 5.613 10 C 0.171 3.829 11 C -0.134 4.134 12 C -0.112 4.112 13 C 0.147 3.853 14 H 0.055 0.945 15 C 0.128 3.872 16 N -0.693 5.693 17 C 0.493 3.507 18 O -0.586 6.586 19 C 0.111 3.889 20 H 0.169 0.831 21 C 0.105 3.895 22 N -0.729 5.729 23 C 0.694 3.306 24 O -0.642 6.642 25 N -0.717 5.717 26 H 0.247 0.753 27 H -0.011 1.011 28 H 0.034 0.966 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.114 0.886 32 H 0.070 0.930 33 H 0.034 0.966 34 H 0.030 0.970 35 H 0.423 0.577 36 H 0.151 0.849 37 H 0.089 0.911 38 H 0.441 0.559 39 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.824 -21.317 1.161 21.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.253 4.253 3 Si 0.796 3.204 4 H -0.221 1.221 5 H -0.219 1.219 6 H -0.192 1.192 7 C -0.367 4.367 8 H 0.094 0.906 9 N -0.338 5.338 10 C 0.046 3.954 11 C -0.173 4.173 12 C -0.149 4.149 13 C 0.040 3.960 14 H 0.072 0.928 15 C 0.001 3.999 16 N -0.347 5.347 17 C 0.277 3.723 18 O -0.465 6.465 19 C 0.001 3.999 20 H 0.186 0.814 21 C -0.019 4.019 22 N -0.392 5.392 23 C 0.393 3.607 24 O -0.524 6.524 25 N -0.378 5.378 26 H 0.056 0.944 27 H 0.007 0.993 28 H 0.053 0.947 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.132 0.868 32 H 0.089 0.911 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.261 0.739 36 H 0.169 0.831 37 H 0.107 0.893 38 H 0.284 0.716 39 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 4.106 -20.525 0.137 20.932 hybrid contribution 0.283 1.769 -0.349 1.826 sum 4.389 -18.756 -0.212 19.263 Atomic orbital electron populations 1.70134 1.06206 1.25266 1.57740 1.25617 0.96455 1.00847 1.02376 0.85249 0.78070 0.79894 0.77184 1.22075 1.21855 1.19167 1.19293 0.90731 0.83751 1.42929 0.90583 1.44770 1.06272 1.02062 1.80654 1.21297 0.83966 0.93923 0.96255 1.22866 0.99804 0.95051 0.99557 1.22646 0.94649 0.97411 1.00240 1.21395 0.96198 0.86515 0.91939 0.92772 1.21680 0.95499 0.84150 0.98525 1.45755 1.54440 1.15928 1.18577 1.21571 0.78673 0.90432 0.81580 1.90772 1.60849 1.48127 1.46772 1.22222 0.90615 0.91737 0.95304 0.81357 1.22629 0.96170 0.99079 0.84040 1.45045 1.24292 1.48742 1.21145 1.16193 0.82160 0.79618 0.82752 1.90948 1.59700 1.71969 1.29760 1.44917 1.27177 1.48026 1.17638 0.94400 0.99291 0.94708 0.89956 0.91213 0.86750 0.91105 0.94777 0.95134 0.73875 0.83127 0.89310 0.71595 0.72528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.23 10.53 21.65 0.23 -56.00 16 2 C -0.06 -3.34 5.47 84.86 0.46 -2.87 16 3 Si 0.97 45.95 29.55 68.60 2.03 47.98 16 4 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.24 -12.89 9.77 84.03 0.82 -12.07 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.61 -29.17 3.13 -668.28 -2.09 -31.26 16 10 C 0.17 7.88 5.43 86.86 0.47 8.35 16 11 C -0.13 -4.12 7.08 31.99 0.23 -3.90 16 12 C -0.11 -2.72 5.96 31.78 0.19 -2.53 16 13 C 0.15 4.93 3.25 45.34 0.15 5.07 16 14 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 15 C 0.13 4.36 5.07 86.38 0.44 4.79 16 16 N -0.69 -14.39 5.38 -463.06 -2.49 -16.88 16 17 C 0.49 11.56 6.93 87.66 0.61 12.17 16 18 O -0.59 -21.76 16.60 -3.01 -0.05 -21.81 16 19 C 0.11 1.43 4.17 44.52 0.19 1.61 16 20 H 0.17 0.51 8.14 -2.39 -0.02 0.49 16 21 C 0.11 0.86 7.70 86.65 0.67 1.53 16 22 N -0.73 -11.20 6.37 -477.34 -3.04 -14.24 16 23 C 0.69 17.40 8.92 179.57 1.60 19.00 16 24 O -0.64 -22.59 18.05 -3.99 -0.07 -22.67 16 25 N -0.72 -14.70 5.63 -460.34 -2.59 -17.29 16 26 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 27 H -0.01 -0.57 8.08 -2.39 -0.02 -0.59 16 28 H 0.03 1.85 6.85 -2.39 -0.02 1.83 16 29 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.11 1.64 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.68 7.81 -2.39 -0.02 1.66 16 33 H 0.03 1.36 8.08 -2.38 -0.02 1.34 16 34 H 0.03 1.28 7.92 -2.39 -0.02 1.26 16 35 H 0.42 4.49 8.17 -92.71 -0.76 3.73 16 36 H 0.15 -0.23 8.14 -2.39 -0.02 -0.25 16 37 H 0.09 0.81 7.72 -2.39 -0.02 0.79 16 38 H 0.44 5.13 8.96 -92.71 -0.83 4.30 16 39 H 0.43 8.89 8.96 -92.71 -0.83 8.06 16 Total: -1.00 -87.58 323.87 -3.58 -91.16 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -1.32 Total: 9.86 kcal Atomic # 6 Polarization: 25.34 SS G_CDS: 5.82 Total: 31.16 kcal Atomic # 7 Polarization: -125.69 SS G_CDS: -9.99 Total: -135.68 kcal Atomic # 8 Polarization: -44.35 SS G_CDS: -0.12 Total: -44.47 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -87.58 -3.58 -91.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028111925.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.854 kcal (2) G-P(sol) polarization free energy of solvation -87.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds