Wall clock time and date at job start Tue Mar 31 2020 03:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34226 * 117.00008 * 2 1 4 4 O 1.20820 * 120.00474 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99420 * 180.02562 * 3 2 1 6 6 H 1.08997 * 115.56392 * 325.68571 * 5 3 2 7 7 C 1.52999 * 117.49511 * 111.37785 * 5 3 2 8 8 C 1.52996 * 59.99986 * 107.48471 * 7 5 3 9 9 H 1.09002 * 117.51629 * 252.51064 * 8 7 5 10 10 C 1.50706 * 117.50052 * 107.48567 * 8 7 5 11 11 O 1.21270 * 119.99962 * 291.37887 * 10 8 7 12 12 N 1.34780 * 119.99633 * 111.37640 * 10 8 7 13 13 C 1.46505 * 119.99513 * 180.02562 * 12 10 8 14 14 C 1.52996 * 109.46692 * 180.02562 * 13 12 10 15 15 C 1.53947 * 113.74500 * 273.73815 * 14 13 12 16 16 N 1.47807 * 86.04200 * 222.08739 * 15 14 13 17 17 C 1.36935 * 134.46010 * 204.64038 * 16 15 14 18 18 H 1.07999 * 120.00408 * 173.34602 * 17 16 15 19 19 C 1.38809 * 119.99636 * 353.35469 * 17 16 15 20 20 N 1.31612 * 120.00468 * 5.05791 * 19 17 16 21 21 Si 1.86813 * 119.99769 * 185.06010 * 19 17 16 22 22 H 1.48494 * 109.47061 * 94.98316 * 21 19 17 23 23 H 1.48499 * 109.47003 * 214.98336 * 21 19 17 24 24 H 1.48499 * 109.46899 * 334.98277 * 21 19 17 25 25 C 1.47583 * 91.04790 * 24.54704 * 16 15 14 26 26 H 1.08998 * 109.47343 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47102 * 300.00577 * 1 2 3 28 28 H 1.09000 * 109.46814 * 59.99968 * 1 2 3 29 29 H 1.08998 * 117.50447 * 359.97438 * 7 5 3 30 30 H 1.09003 * 117.49534 * 214.97218 * 7 5 3 31 31 H 0.96998 * 120.00291 * 0.27549 * 12 10 8 32 32 H 1.08997 * 109.47141 * 300.00186 * 13 12 10 33 33 H 1.08999 * 109.47118 * 60.00213 * 13 12 10 34 34 H 1.08996 * 112.94744 * 45.33650 * 14 13 12 35 35 H 1.09002 * 113.76630 * 336.35367 * 15 14 13 36 36 H 1.09002 * 113.77118 * 107.74617 * 15 14 13 37 37 H 0.97002 * 120.00654 * 180.02562 * 20 19 17 38 38 H 1.09003 * 113.76963 * 221.14832 * 25 16 15 39 39 H 1.09000 * 113.86923 * 89.76959 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 4.0788 0.4881 0.5534 7 6 4.2455 1.8059 -1.2645 8 6 4.2009 2.6669 -0.0007 9 1 3.5299 3.5259 0.0001 10 6 5.4864 2.8457 0.7653 11 8 5.9790 1.9052 1.3513 12 7 6.0887 4.0510 0.7989 13 6 7.3387 4.2247 1.5430 14 6 7.8072 5.6761 1.4211 15 6 8.6565 5.9500 0.1667 16 7 9.5200 6.7583 1.0531 17 6 10.3819 7.8045 0.8587 18 1 10.8271 8.3023 1.7075 19 6 10.6833 8.2253 -0.4293 20 7 10.0661 7.6862 -1.4591 21 14 11.9651 9.5569 -0.7009 22 1 13.2812 8.9278 -0.9787 23 1 11.5657 10.4000 -1.8562 24 1 12.0671 10.4013 0.5164 25 6 9.0787 5.9870 2.2314 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.6038 2.0980 -2.0958 30 1 5.2047 1.3687 -1.5421 31 1 5.6926 4.8043 0.3335 32 1 7.1729 3.9837 2.5930 33 1 8.1004 3.5611 1.1337 34 1 7.0032 6.3963 1.5727 35 1 9.1466 5.0629 -0.2344 36 1 8.1392 6.5329 -0.5954 37 1 10.2770 7.9799 -2.3592 38 1 8.8979 6.5994 3.1148 39 1 9.6921 5.1105 2.4398 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031581065.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:04 Heat of formation + Delta-G solvation = -64.426881 kcal Electronic energy + Delta-G solvation = -21247.951152 eV Core-core repulsion = 17771.657089 eV Total energy + Delta-G solvation = -3476.294063 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.86925 -40.86351 -39.71178 -38.01487 -36.84157 -35.71438 -34.16902 -30.73821 -29.21671 -27.96507 -26.55059 -25.82722 -24.82376 -23.44597 -21.80389 -21.29439 -20.40266 -19.24024 -18.72903 -18.04196 -17.64483 -17.40440 -17.00001 -16.95790 -16.29483 -15.87009 -15.59647 -15.13544 -14.85265 -14.54654 -14.31279 -14.06169 -13.70325 -13.44071 -13.30664 -13.09457 -12.92455 -12.88234 -12.53853 -12.22133 -11.94612 -11.87646 -11.83659 -11.73806 -11.63620 -11.56785 -11.27599 -10.91673 -10.86003 -10.06014 -8.90307 -7.92374 -5.24229 0.89226 1.37024 1.45613 1.47482 1.56119 1.56450 2.21612 2.47599 2.69366 3.28390 3.40302 3.41233 3.61407 3.64994 3.79788 3.93610 4.09097 4.12336 4.29671 4.33211 4.37295 4.59945 4.61770 4.71193 4.79306 4.82865 4.87168 4.88946 4.92397 5.11198 5.26490 5.27247 5.41889 5.55545 5.65999 5.94359 6.53357 6.62118 6.92631 7.19040 7.60657 8.57186 9.25383 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.040557 B = 0.002590 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.217347 B =10809.868767 C =11143.362324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.498 3.502 4 O -0.531 6.531 5 C -0.144 4.144 6 H 0.147 0.853 7 C -0.095 4.095 8 C -0.160 4.160 9 H 0.149 0.851 10 C 0.542 3.458 11 O -0.579 6.579 12 N -0.708 5.708 13 C 0.142 3.858 14 C -0.116 4.116 15 C 0.170 3.830 16 N -0.647 5.647 17 C -0.236 4.236 18 H 0.083 0.917 19 C -0.068 4.068 20 N -0.952 5.952 21 Si 0.976 3.024 22 H -0.290 1.290 23 H -0.293 1.293 24 H -0.267 1.267 25 C 0.125 3.875 26 H 0.133 0.867 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.133 0.867 30 H 0.125 0.875 31 H 0.415 0.585 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.104 0.896 35 H 0.014 0.986 36 H 0.041 0.959 37 H 0.249 0.751 38 H 0.061 0.939 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.302 -14.310 1.718 23.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.343 3.657 4 O -0.421 6.421 5 C -0.164 4.164 6 H 0.164 0.836 7 C -0.132 4.132 8 C -0.181 4.181 9 H 0.167 0.833 10 C 0.329 3.671 11 O -0.459 6.459 12 N -0.359 5.359 13 C 0.017 3.983 14 C -0.135 4.135 15 C 0.044 3.956 16 N -0.374 5.374 17 C -0.364 4.364 18 H 0.101 0.899 19 C -0.261 4.261 20 N -0.600 5.600 21 Si 0.805 3.195 22 H -0.217 1.217 23 H -0.220 1.220 24 H -0.191 1.191 25 C 0.000 4.000 26 H 0.151 0.849 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.151 0.849 30 H 0.143 0.857 31 H 0.252 0.748 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.122 0.878 35 H 0.032 0.968 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.991 -14.432 1.988 23.150 hybrid contribution 0.585 1.127 -0.495 1.363 sum -17.406 -13.306 1.493 21.960 Atomic orbital electron populations 1.23619 0.74263 1.05939 1.02759 1.86487 1.25286 1.32224 1.83437 1.22630 0.90463 0.81343 0.71272 1.90665 1.67440 1.37185 1.46790 1.21652 0.87925 0.99424 1.07354 0.83563 1.23264 1.03064 0.97136 0.89713 1.22260 0.96659 0.96203 1.02949 0.83340 1.19779 0.84941 0.82373 0.79984 1.90685 1.67008 1.41262 1.46977 1.45857 1.25124 1.11838 1.53059 1.21222 0.85063 0.95452 0.96552 1.23420 0.97120 0.95196 0.97789 1.22208 0.88758 0.91654 0.92931 1.46405 1.51021 1.34211 1.05755 1.19428 1.18333 1.06107 0.92551 0.89897 1.25652 1.02282 1.02919 0.95234 1.69994 1.45231 1.46940 0.97880 0.85090 0.78603 0.78375 0.77479 1.21671 1.21986 1.19107 1.22701 0.91792 0.94006 0.91509 0.84896 0.91942 0.91494 0.84930 0.85658 0.74841 0.90576 0.92513 0.87752 0.96816 0.94065 0.94215 0.92053 0.93525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.36 -6.34 10.57 -51.38 -0.54 -6.89 16 3 C 0.50 10.17 7.74 71.24 0.55 10.72 16 4 O -0.53 -13.18 16.01 21.98 0.35 -12.83 16 5 C -0.14 -2.70 5.81 -11.54 -0.07 -2.77 16 6 H 0.15 2.88 7.67 -2.39 -0.02 2.86 16 7 C -0.09 -1.43 9.94 30.59 0.30 -1.12 16 8 C -0.16 -3.11 5.70 -11.54 -0.07 -3.17 16 9 H 0.15 2.64 7.67 -2.39 -0.02 2.62 16 10 C 0.54 13.91 7.61 87.66 0.67 14.58 16 11 O -0.58 -18.87 16.26 -3.00 -0.05 -18.92 16 12 N -0.71 -17.48 5.56 -463.06 -2.57 -20.06 16 13 C 0.14 4.04 5.51 86.38 0.48 4.52 16 14 C -0.12 -3.86 3.93 -10.14 -0.04 -3.90 16 15 C 0.17 7.72 6.99 86.44 0.60 8.33 16 16 N -0.65 -32.83 3.70 -716.03 -2.65 -35.48 16 17 C -0.24 -13.23 10.70 84.03 0.90 -12.33 16 18 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 19 C -0.07 -3.86 5.50 84.86 0.47 -3.40 16 20 N -0.95 -57.11 11.51 21.65 0.25 -56.86 16 21 Si 0.98 45.62 29.56 68.60 2.03 47.65 16 22 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 C 0.13 4.80 8.51 86.49 0.74 5.53 16 26 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.06 0.73 8.13 -2.38 -0.02 0.72 16 28 H 0.07 0.73 8.13 -2.39 -0.02 0.71 16 29 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.42 8.63 8.47 -92.71 -0.79 7.84 16 32 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.06 1.81 7.88 -2.39 -0.02 1.79 16 34 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 35 H 0.01 0.67 7.92 -2.39 -0.02 0.65 16 36 H 0.04 2.08 7.37 -2.39 -0.02 2.06 16 37 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 38 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.05 1.72 8.10 -2.39 -0.02 1.70 16 Total: -1.00 -74.05 339.31 2.82 -71.23 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.27 Total: 13.67 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: 5.73 Total: 18.48 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -4.97 Total: -112.40 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -0.24 Total: -38.63 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -74.05 2.82 -71.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031581065.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.806 kcal (2) G-P(sol) polarization free energy of solvation -74.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds