Wall clock time and date at job start Tue Mar 31 2020 03:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34778 * 120.00157 * 2 1 4 4 O 1.21741 * 119.99924 * 183.16256 * 3 2 1 5 5 C 1.46375 * 120.00166 * 3.15979 * 3 2 1 6 6 C 1.33979 * 119.23143 * 26.69718 * 5 3 2 7 7 O 1.35001 * 121.68811 * 180.34350 * 6 5 3 8 8 C 1.43245 * 116.76638 * 342.82962 * 7 6 5 9 9 C 1.53546 * 108.08974 * 45.48053 * 8 7 6 10 10 O 1.36208 * 119.23263 * 206.42950 * 5 3 2 11 11 C 1.46497 * 119.99642 * 179.97438 * 2 1 3 12 12 H 1.09001 * 110.64254 * 178.31353 * 11 2 1 13 13 C 1.55155 * 110.87368 * 55.06837 * 11 2 1 14 14 C 1.55130 * 101.48635 * 205.89864 * 13 11 2 15 15 N 1.47422 * 104.72241 * 37.28943 * 14 13 11 16 16 C 1.36939 * 125.64402 * 155.81733 * 15 14 13 17 17 H 1.08005 * 119.99728 * 199.74855 * 16 15 14 18 18 C 1.38810 * 120.00427 * 19.75436 * 16 15 14 19 19 N 1.31624 * 119.99915 * 29.82663 * 18 16 15 20 20 Si 1.86802 * 120.00181 * 209.83360 * 18 16 15 21 21 H 1.48497 * 109.47234 * 179.97438 * 20 18 16 22 22 H 1.48502 * 109.46904 * 299.99698 * 20 18 16 23 23 H 1.48501 * 109.47106 * 59.99248 * 20 18 16 24 24 C 1.47014 * 108.70672 * 335.55652 * 15 14 13 25 25 H 1.08997 * 109.47175 * 263.99214 * 1 2 3 26 26 H 1.09002 * 109.46664 * 23.98774 * 1 2 3 27 27 H 1.08997 * 109.46987 * 143.98638 * 1 2 3 28 28 H 1.08007 * 119.15545 * 0.32868 * 6 5 3 29 29 H 1.08992 * 109.74202 * 165.13179 * 8 7 6 30 30 H 1.08999 * 109.73421 * 285.83417 * 8 7 6 31 31 H 1.08998 * 109.75802 * 61.47649 * 9 8 7 32 32 H 1.09002 * 109.75208 * 182.17544 * 9 8 7 33 33 H 1.09004 * 111.00513 * 324.13354 * 13 11 2 34 34 H 1.08993 * 111.00605 * 87.94934 * 13 11 2 35 35 H 1.09006 * 110.49455 * 278.45335 * 14 13 11 36 36 H 1.09003 * 110.34299 * 156.05766 * 14 13 11 37 37 H 0.96995 * 119.99631 * 6.27786 * 19 18 16 38 38 H 1.08999 * 109.88573 * 120.70092 * 24 15 14 39 39 H 1.08992 * 109.88528 * 241.86872 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3550 1.1679 -0.0582 5 6 1.4088 2.4339 0.0699 6 6 0.2036 2.4630 0.6544 7 8 -0.5156 3.6023 0.7401 8 6 0.1933 4.8298 0.5341 9 6 1.0906 4.6608 -0.7004 10 8 1.9729 3.5567 -0.4560 11 6 2.1975 -1.2688 0.0006 12 1 3.2726 -1.0918 -0.0295 13 6 1.7549 -2.1631 -1.1876 14 6 2.0758 -3.5801 -0.6439 15 7 1.7365 -3.5172 0.7894 16 6 1.4057 -4.5861 1.5788 17 1 0.8737 -4.4289 2.5055 18 6 1.7542 -5.8717 1.1882 19 7 2.8320 -6.0685 0.4587 20 14 0.6935 -7.3226 1.6975 21 1 1.2770 -8.5764 1.1566 22 1 0.6396 -7.4002 3.1795 23 1 -0.6797 -7.1443 1.1610 24 6 1.8182 -2.1177 1.2323 25 1 -0.3633 -0.1076 1.0220 26 1 -0.3633 0.9390 -0.4178 27 1 -0.3633 -0.8312 -0.6042 28 1 -0.2030 1.5516 1.0674 29 1 -0.5154 5.6405 0.3659 30 1 0.8067 5.0516 1.4075 31 1 0.4761 4.4587 -1.5776 32 1 1.6728 5.5685 -0.8596 33 1 0.6892 -2.0494 -1.3864 34 1 2.3420 -1.9460 -2.0798 35 1 3.1339 -3.8081 -0.7735 36 1 1.4615 -4.3270 -1.1468 37 1 3.4318 -5.3297 0.2706 38 1 0.8526 -1.7951 1.6217 39 1 2.5831 -2.0165 2.0020 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032875214.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:08 Heat of formation + Delta-G solvation = -55.867863 kcal Electronic energy + Delta-G solvation = -22832.087051 eV Core-core repulsion = 19356.164135 eV Total energy + Delta-G solvation = -3475.922917 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -42.35500 -40.95201 -39.14900 -38.01097 -36.66762 -34.61235 -32.92125 -31.07530 -30.18272 -28.89760 -28.35354 -26.39353 -25.95901 -23.26316 -22.25456 -21.07656 -20.63020 -19.57041 -19.37537 -18.67939 -18.10150 -17.34133 -16.66427 -16.35180 -15.93106 -15.91684 -15.77001 -15.47218 -15.23113 -15.14856 -14.92998 -14.50415 -14.27977 -13.88552 -13.57544 -13.42919 -12.73364 -12.62804 -12.54698 -12.50175 -12.41321 -11.93140 -11.88438 -11.73304 -11.62459 -11.61049 -11.03924 -10.51734 -9.87740 -9.27281 -9.05284 -8.34652 -5.38562 0.23365 1.28928 1.60135 1.67813 1.84420 1.87395 2.25767 2.54480 2.66489 3.15685 3.39587 3.43532 3.54408 3.66369 3.78331 3.84045 3.97693 4.05145 4.09587 4.22830 4.30915 4.36347 4.44823 4.47012 4.62432 4.70730 4.78280 4.82327 4.90895 4.92583 5.00354 5.19269 5.35565 5.67682 5.72274 6.11019 6.28152 6.33540 6.84648 6.93080 7.66609 8.25049 8.95137 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.039391 B = 0.003708 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.660244 B = 7550.145043 C = 7937.517798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.587 5.587 3 C 0.569 3.431 4 O -0.580 6.580 5 C -0.099 4.099 6 C 0.022 3.978 7 O -0.302 6.302 8 C 0.008 3.992 9 C 0.011 3.989 10 O -0.323 6.323 11 C 0.144 3.856 12 H 0.083 0.917 13 C -0.123 4.123 14 C 0.148 3.852 15 N -0.618 5.618 16 C -0.351 4.351 17 H 0.062 0.938 18 C -0.075 4.075 19 N -0.939 5.939 20 Si 1.118 2.882 21 H -0.293 1.293 22 H -0.275 1.275 23 H -0.275 1.275 24 C 0.129 3.871 25 H 0.087 0.913 26 H 0.112 0.888 27 H 0.088 0.912 28 H 0.218 0.782 29 H 0.159 0.841 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.145 0.855 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.002 0.998 36 H 0.033 0.967 37 H 0.252 0.748 38 H 0.052 0.948 39 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.558 22.640 -2.596 25.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.319 5.319 3 C 0.359 3.641 4 O -0.461 6.461 5 C -0.148 4.148 6 C -0.044 4.044 7 O -0.214 6.214 8 C -0.066 4.066 9 C -0.064 4.064 10 O -0.239 6.239 11 C 0.039 3.961 12 H 0.101 0.899 13 C -0.162 4.162 14 C 0.022 3.978 15 N -0.346 5.346 16 C -0.479 4.479 17 H 0.080 0.920 18 C -0.272 4.272 19 N -0.580 5.580 20 Si 0.942 3.058 21 H -0.220 1.220 22 H -0.200 1.200 23 H -0.201 1.201 24 C 0.003 3.997 25 H 0.105 0.895 26 H 0.130 0.870 27 H 0.107 0.893 28 H 0.234 0.766 29 H 0.177 0.823 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.163 0.837 33 H 0.115 0.885 34 H 0.103 0.897 35 H 0.020 0.980 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -11.188 21.037 -2.728 23.983 hybrid contribution 1.095 1.512 0.265 1.886 sum -10.093 22.549 -2.463 24.827 Atomic orbital electron populations 1.22834 0.77221 1.05893 1.03888 1.47535 1.08426 1.03869 1.72045 1.17709 0.86533 0.83446 0.76368 1.90804 1.15620 1.87714 1.52001 1.19923 0.97017 0.88269 1.09554 1.24566 0.91295 0.92121 0.96466 1.86160 1.36637 1.13460 1.85177 1.24040 0.98292 0.85867 0.98421 1.24049 0.94485 0.89573 0.98254 1.86391 1.36820 1.21262 1.79381 1.21795 0.96606 0.81952 0.95721 0.89858 1.23082 1.03043 0.93232 0.96804 1.21458 0.96312 0.95287 0.84731 1.44766 1.81846 1.02507 1.05443 1.19988 1.33824 0.87092 1.06987 0.92005 1.27279 0.98360 1.01563 0.99991 1.70908 1.10309 1.33860 1.42952 0.82833 0.74380 0.72392 0.76216 1.21959 1.20048 1.20094 1.21646 0.98486 0.85074 0.94489 0.89480 0.87025 0.89339 0.76617 0.82319 0.90042 0.89510 0.83684 0.88503 0.89711 0.97978 0.94829 0.93767 0.93003 0.97629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 7.73 127.77 0.99 1.80 16 2 N -0.59 -17.26 2.89 -820.97 -2.37 -19.63 16 3 C 0.57 18.97 7.50 86.36 0.65 19.61 16 4 O -0.58 -25.08 16.39 7.40 0.12 -24.96 16 5 C -0.10 -2.59 6.24 23.42 0.15 -2.45 16 6 C 0.02 0.40 8.46 66.85 0.57 0.97 16 7 O -0.30 -4.73 10.47 -69.23 -0.72 -5.46 16 8 C 0.01 0.09 7.29 72.17 0.53 0.61 16 9 C 0.01 0.15 7.32 72.17 0.53 0.68 16 10 O -0.32 -8.47 10.39 -72.87 -0.76 -9.23 16 11 C 0.14 5.27 3.35 46.18 0.15 5.43 16 12 H 0.08 3.50 6.99 -2.39 -0.02 3.49 16 13 C -0.12 -4.32 6.64 32.06 0.21 -4.11 16 14 C 0.15 6.98 5.45 86.93 0.47 7.46 16 15 N -0.62 -31.67 3.25 -691.56 -2.25 -33.92 16 16 C -0.35 -19.89 9.98 84.03 0.84 -19.06 16 17 H 0.06 3.46 7.98 -2.91 -0.02 3.44 16 18 C -0.08 -4.34 5.08 84.86 0.43 -3.90 16 19 N -0.94 -58.37 12.99 21.65 0.28 -58.09 16 20 Si 1.12 50.61 30.01 68.60 2.06 52.67 16 21 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 23 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 24 C 0.13 5.48 6.88 86.73 0.60 6.08 16 25 H 0.09 1.41 6.70 -2.39 -0.02 1.40 16 26 H 0.11 1.63 5.04 -2.39 -0.01 1.62 16 27 H 0.09 1.72 6.09 -2.39 -0.01 1.70 16 28 H 0.22 3.20 4.28 -2.91 -0.01 3.19 16 29 H 0.16 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.15 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.10 2.94 6.09 -2.38 -0.01 2.92 16 34 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.00 0.13 6.87 -2.38 -0.02 0.11 16 36 H 0.03 1.69 8.08 -2.39 -0.02 1.67 16 37 H 0.25 16.15 6.38 -92.71 -0.59 15.55 16 38 H 0.05 1.98 6.79 -2.39 -0.02 1.97 16 39 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 Total: -1.00 -80.43 309.76 3.72 -76.71 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: 1.25 Total: 8.78 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 6.11 Total: 13.12 kcal Atomic # 7 Polarization: -107.30 SS G_CDS: -4.34 Total: -111.64 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -1.36 Total: -39.64 kcal Atomic # 14 Polarization: 50.61 SS G_CDS: 2.06 Total: 52.67 kcal Total: -80.43 3.72 -76.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032875214.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.844 kcal (2) G-P(sol) polarization free energy of solvation -80.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds