Wall clock time and date at job start Tue Mar 31 2020 03:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34232 * 116.99580 * 2 1 4 4 O 1.20819 * 120.00018 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99543 * 180.02562 * 3 2 1 6 6 H 1.08997 * 115.55215 * 34.33078 * 5 3 2 7 7 C 1.53004 * 117.51565 * 248.62360 * 5 3 2 8 8 C 1.52999 * 117.49772 * 179.97438 * 5 3 2 9 9 H 1.09004 * 117.49843 * 0.02562 * 8 5 3 10 10 C 1.50701 * 117.50491 * 214.99987 * 8 5 3 11 11 O 1.21285 * 119.99582 * 0.02562 * 10 8 5 12 12 N 1.34770 * 120.00405 * 179.97438 * 10 8 5 13 13 C 1.46501 * 119.99971 * 0.02562 * 12 10 8 14 14 C 1.46500 * 120.00002 * 180.02562 * 12 10 8 15 15 C 1.53947 * 113.74297 * 240.00358 * 14 12 10 16 16 N 1.47584 * 86.11565 * 269.26043 * 15 14 12 17 17 C 1.36935 * 134.49069 * 155.35638 * 16 15 14 18 18 H 1.08000 * 120.00181 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99885 * 179.97438 * 17 16 15 20 20 N 1.31614 * 120.00202 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00152 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46831 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47112 * 119.99640 * 21 19 17 24 24 H 1.48497 * 109.47211 * 240.00381 * 21 19 17 25 25 C 1.47576 * 91.01498 * 335.35788 * 16 15 14 26 26 H 1.09002 * 109.46910 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47136 * 300.00358 * 1 2 3 28 28 H 1.09003 * 109.46961 * 60.00332 * 1 2 3 29 29 H 1.09003 * 117.49348 * 145.03107 * 7 5 3 30 30 H 1.08995 * 117.49837 * 0.02562 * 7 5 3 31 31 H 1.08996 * 109.46811 * 269.99543 * 13 12 10 32 32 H 1.08993 * 109.46959 * 29.99722 * 13 12 10 33 33 H 1.09001 * 109.47015 * 149.99708 * 13 12 10 34 34 H 1.08997 * 113.01936 * 11.66155 * 14 12 10 35 35 H 1.09001 * 113.76955 * 23.56078 * 15 14 12 36 36 H 1.08997 * 113.77064 * 154.96154 * 15 14 12 37 37 H 0.96998 * 120.00287 * 179.97438 * 20 19 17 38 38 H 1.09003 * 113.77250 * 270.33779 * 25 16 15 39 39 H 1.08995 * 113.76824 * 138.94137 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 1 4.0780 0.4887 -0.5555 7 6 4.2468 1.8056 1.2629 8 6 4.2007 2.6672 -0.0012 9 1 3.5295 3.5261 -0.0007 10 6 5.4853 2.8463 -0.7684 11 8 5.9772 1.9058 -1.3554 12 7 6.0872 4.0516 -0.8030 13 6 5.4928 5.1878 -0.0944 14 6 7.3357 4.2258 -1.5493 15 6 8.5184 4.6890 -0.6794 16 7 8.0983 6.0629 -1.0168 17 6 8.2487 7.2862 -0.4202 18 1 8.7826 7.3690 0.5150 19 6 7.7160 8.4202 -1.0178 20 7 7.0658 8.3195 -2.1577 21 14 7.9218 10.0891 -0.2043 22 1 8.6865 9.9329 1.0591 23 1 8.6583 10.9981 -1.1189 24 1 6.5850 10.6630 0.0934 25 6 7.4509 5.5889 -2.2554 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 5.2063 1.3683 1.5391 30 1 3.6060 2.0974 2.0949 31 1 4.8085 5.7135 -0.7602 32 1 4.9466 4.8269 0.7770 33 1 6.2813 5.8682 0.2272 34 1 7.5699 3.3774 -2.1923 35 1 8.4096 4.4432 0.3769 36 1 9.4937 4.4163 -1.0826 37 1 6.6932 9.1118 -2.5752 38 1 8.1125 5.5806 -3.1216 39 1 6.4897 6.0616 -2.4573 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042535336.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:40 Heat of formation + Delta-G solvation = -21.918148 kcal Electronic energy + Delta-G solvation = -22354.167286 eV Core-core repulsion = 18879.716539 eV Total energy + Delta-G solvation = -3474.450746 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.90975 -39.84953 -38.09046 -36.87627 -35.68230 -34.01156 -32.05080 -28.52788 -27.98566 -26.14099 -25.33801 -24.80359 -24.14955 -22.57316 -20.85054 -19.56976 -18.48639 -17.95889 -17.18090 -16.79119 -16.54458 -16.21835 -15.68421 -15.05845 -14.81423 -14.27616 -14.08977 -13.68792 -13.53479 -12.95576 -12.80878 -12.64887 -12.48403 -12.20502 -12.14492 -11.56538 -11.35175 -11.28205 -11.04913 -10.97299 -10.91008 -10.73291 -10.64504 -10.58470 -10.16015 -9.80242 -9.58486 -9.55287 -8.84477 -8.03455 -6.91729 -5.82843 -3.16330 1.85178 2.32814 2.69357 3.33984 3.37802 3.40989 3.43179 3.70500 4.38466 4.40059 4.53898 4.58114 4.84388 4.86821 4.92646 5.05930 5.15832 5.25539 5.38777 5.43323 5.54194 5.72330 5.78961 5.79459 6.10673 6.12788 6.17849 6.28974 6.44049 6.51648 6.73213 6.95336 7.15926 7.28348 7.51733 7.53972 7.88477 7.94715 8.49171 8.98308 9.64294 10.52705 11.33205 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.027136 B = 0.003730 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.583067 B = 7504.944912 C = 8043.414031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.354 6.354 3 C 0.494 3.506 4 O -0.504 6.504 5 C -0.142 4.142 6 H 0.149 0.851 7 C -0.115 4.115 8 C -0.149 4.149 9 H 0.139 0.861 10 C 0.540 3.460 11 O -0.553 6.553 12 N -0.568 5.568 13 C 0.071 3.929 14 C 0.087 3.913 15 C 0.106 3.894 16 N -0.608 5.608 17 C -0.226 4.226 18 H 0.080 0.920 19 C -0.004 4.004 20 N -0.917 5.917 21 Si 0.909 3.091 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.153 3.847 26 H 0.102 0.898 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.118 0.882 30 H 0.111 0.889 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.116 0.884 34 H 0.095 0.905 35 H 0.046 0.954 36 H 0.044 0.956 37 H 0.254 0.746 38 H 0.038 0.962 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.644 -14.600 5.945 18.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.270 6.270 3 C 0.337 3.663 4 O -0.391 6.391 5 C -0.161 4.161 6 H 0.167 0.833 7 C -0.153 4.153 8 C -0.170 4.170 9 H 0.157 0.843 10 C 0.327 3.673 11 O -0.433 6.433 12 N -0.297 5.297 13 C -0.071 4.071 14 C -0.018 4.018 15 C -0.021 4.021 16 N -0.336 5.336 17 C -0.354 4.354 18 H 0.098 0.902 19 C -0.201 4.201 20 N -0.563 5.563 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.217 1.217 25 C 0.027 3.973 26 H 0.120 0.880 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.136 0.864 30 H 0.129 0.871 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.134 0.866 34 H 0.112 0.888 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.653 -14.406 5.670 18.244 hybrid contribution -0.074 1.235 0.205 1.254 sum -9.727 -13.171 5.874 17.395 Atomic orbital electron populations 1.23297 0.76135 1.03747 1.02690 1.86494 1.23446 1.33039 1.84029 1.22583 0.90343 0.81311 0.72030 1.90683 1.66840 1.36384 1.45217 1.21660 0.88028 1.00339 1.06080 0.83287 1.23075 1.02576 0.99498 0.90133 1.22380 0.98210 0.95007 1.01368 0.84277 1.19363 0.84291 0.82871 0.80795 1.90653 1.66135 1.40207 1.46304 1.47297 1.23599 1.09101 1.49748 1.22057 1.00793 0.89134 0.95135 1.22959 0.83844 1.00065 0.94907 1.23012 0.94887 0.86382 0.97777 1.46178 1.63400 1.01675 1.22313 1.19037 1.30532 0.82631 1.03180 0.90218 1.24767 1.00681 0.97595 0.97054 1.69819 1.40457 1.28176 1.17878 0.86104 0.77378 0.84222 0.78377 1.20497 1.21803 1.21657 1.22628 0.98467 0.86726 0.89470 0.87986 0.91823 0.91759 0.86421 0.87062 0.92764 0.92755 0.86603 0.88762 0.93546 0.93853 0.93611 0.94429 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.34 16 2 O -0.35 -3.86 10.57 -39.26 -0.41 -4.27 16 3 C 0.49 6.22 7.74 36.00 0.28 6.50 16 4 O -0.50 -7.53 16.01 -18.74 -0.30 -7.83 16 5 C -0.14 -1.71 5.81 -91.77 -0.53 -2.24 16 6 H 0.15 1.80 7.67 -51.93 -0.40 1.40 16 7 C -0.12 -1.20 9.94 -26.71 -0.27 -1.47 16 8 C -0.15 -2.01 4.31 -91.75 -0.40 -2.41 16 9 H 0.14 1.91 6.79 -51.93 -0.35 1.56 16 10 C 0.54 9.16 7.46 -10.99 -0.08 9.08 16 11 O -0.55 -10.65 15.75 5.55 0.09 -10.56 16 12 N -0.57 -10.28 3.09 -175.75 -0.54 -10.83 16 13 C 0.07 1.26 8.95 59.85 0.54 1.80 16 14 C 0.09 1.70 4.51 -70.14 -0.32 1.38 16 15 C 0.11 2.13 8.41 -2.97 -0.03 2.11 16 16 N -0.61 -14.60 2.29 -178.09 -0.41 -15.01 16 17 C -0.23 -5.94 9.74 -15.06 -0.15 -6.09 16 18 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 19 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 20 N -0.92 -25.83 11.38 55.49 0.63 -25.20 16 21 Si 0.91 21.25 29.55 -169.99 -5.02 16.23 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 C 0.15 3.49 6.75 -2.98 -0.02 3.47 16 26 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.47 8.13 -51.93 -0.42 0.04 16 28 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 29 H 0.12 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.78 6.64 -51.93 -0.34 0.44 16 33 H 0.12 2.42 5.33 -51.93 -0.28 2.14 16 34 H 0.09 1.80 7.25 -51.93 -0.38 1.43 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 38 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 2.00 6.83 -51.93 -0.35 1.65 16 LS Contribution 329.56 15.07 4.97 4.97 Total: -1.00 -31.41 329.56 -6.46 -37.87 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -5.45 Total: 1.37 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: 0.00 Total: 13.27 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: -0.32 Total: -51.03 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.63 Total: -22.67 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.41 -6.46 -37.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042535336.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.951 kcal (2) G-P(sol) polarization free energy of solvation -31.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds