Wall clock time and date at job start Tue Mar 31 2020 03:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34232 * 116.99580 * 2 1 4 4 O 1.20819 * 120.00018 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99543 * 180.02562 * 3 2 1 6 6 H 1.08997 * 115.55215 * 34.33078 * 5 3 2 7 7 C 1.53004 * 117.51565 * 248.62360 * 5 3 2 8 8 C 1.52999 * 117.49772 * 179.97438 * 5 3 2 9 9 H 1.09004 * 117.49843 * 0.02562 * 8 5 3 10 10 C 1.50701 * 117.50491 * 214.99987 * 8 5 3 11 11 O 1.21285 * 119.99582 * 0.02562 * 10 8 5 12 12 N 1.34770 * 120.00405 * 179.97438 * 10 8 5 13 13 C 1.46501 * 119.99971 * 0.02562 * 12 10 8 14 14 C 1.46500 * 120.00002 * 180.02562 * 12 10 8 15 15 C 1.53947 * 113.74297 * 240.00358 * 14 12 10 16 16 N 1.47584 * 86.11565 * 269.26043 * 15 14 12 17 17 C 1.36935 * 134.49069 * 155.35638 * 16 15 14 18 18 H 1.08000 * 120.00181 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99885 * 179.97438 * 17 16 15 20 20 N 1.31614 * 120.00202 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00152 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46831 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47112 * 119.99640 * 21 19 17 24 24 H 1.48497 * 109.47211 * 240.00381 * 21 19 17 25 25 C 1.47576 * 91.01498 * 335.35788 * 16 15 14 26 26 H 1.09002 * 109.46910 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47136 * 300.00358 * 1 2 3 28 28 H 1.09003 * 109.46961 * 60.00332 * 1 2 3 29 29 H 1.09003 * 117.49348 * 145.03107 * 7 5 3 30 30 H 1.08995 * 117.49837 * 0.02562 * 7 5 3 31 31 H 1.08996 * 109.46811 * 269.99543 * 13 12 10 32 32 H 1.08993 * 109.46959 * 29.99722 * 13 12 10 33 33 H 1.09001 * 109.47015 * 149.99708 * 13 12 10 34 34 H 1.08997 * 113.01936 * 11.66155 * 14 12 10 35 35 H 1.09001 * 113.76955 * 23.56078 * 15 14 12 36 36 H 1.08997 * 113.77064 * 154.96154 * 15 14 12 37 37 H 0.96998 * 120.00287 * 179.97438 * 20 19 17 38 38 H 1.09003 * 113.77250 * 270.33779 * 25 16 15 39 39 H 1.08995 * 113.76824 * 138.94137 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 1 4.0780 0.4887 -0.5555 7 6 4.2468 1.8056 1.2629 8 6 4.2007 2.6672 -0.0012 9 1 3.5295 3.5261 -0.0007 10 6 5.4853 2.8463 -0.7684 11 8 5.9772 1.9058 -1.3554 12 7 6.0872 4.0516 -0.8030 13 6 5.4928 5.1878 -0.0944 14 6 7.3357 4.2258 -1.5493 15 6 8.5184 4.6890 -0.6794 16 7 8.0983 6.0629 -1.0168 17 6 8.2487 7.2862 -0.4202 18 1 8.7826 7.3690 0.5150 19 6 7.7160 8.4202 -1.0178 20 7 7.0658 8.3195 -2.1577 21 14 7.9218 10.0891 -0.2043 22 1 8.6865 9.9329 1.0591 23 1 8.6583 10.9981 -1.1189 24 1 6.5850 10.6630 0.0934 25 6 7.4509 5.5889 -2.2554 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 5.2063 1.3683 1.5391 30 1 3.6060 2.0974 2.0949 31 1 4.8085 5.7135 -0.7602 32 1 4.9466 4.8269 0.7770 33 1 6.2813 5.8682 0.2272 34 1 7.5699 3.3774 -2.1923 35 1 8.4096 4.4432 0.3769 36 1 9.4937 4.4163 -1.0826 37 1 6.6932 9.1118 -2.5752 38 1 8.1125 5.5806 -3.1216 39 1 6.4897 6.0616 -2.4573 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042535336.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:39 Heat of formation + Delta-G solvation = -40.530901 kcal Electronic energy + Delta-G solvation = -22354.974395 eV Core-core repulsion = 18879.716539 eV Total energy + Delta-G solvation = -3475.257856 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.94149 -41.18341 -39.56429 -37.91237 -36.75644 -35.58139 -33.98745 -29.91492 -29.17569 -27.63381 -26.58625 -26.53617 -25.20977 -24.16842 -21.90005 -20.93491 -19.76065 -19.28039 -18.64290 -18.15407 -17.46972 -17.37268 -17.11527 -16.74199 -16.36448 -15.68112 -15.46779 -15.02542 -14.55581 -14.52187 -14.15479 -14.07753 -13.64365 -13.38802 -13.19790 -13.08290 -12.92722 -12.91545 -12.77044 -12.37600 -12.00491 -11.93565 -11.83481 -11.74363 -11.63056 -11.57317 -11.45570 -11.04921 -10.72684 -9.56531 -8.85794 -7.86360 -5.20144 0.88728 1.34161 1.48705 1.50350 1.54955 1.59343 2.06034 2.49306 2.67541 3.28744 3.38963 3.42661 3.47036 3.65253 3.87560 3.90465 4.10862 4.30229 4.33225 4.41347 4.45767 4.52066 4.60664 4.71034 4.78666 4.80134 4.82814 4.90714 4.91756 5.09663 5.26220 5.26928 5.35230 5.50989 5.71433 5.93038 6.49953 6.62663 6.94400 7.10296 7.63922 8.57585 9.29546 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.027136 B = 0.003730 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.583067 B = 7504.944912 C = 8043.414031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.498 3.502 4 O -0.533 6.533 5 C -0.141 4.141 6 H 0.149 0.851 7 C -0.085 4.085 8 C -0.166 4.166 9 H 0.138 0.862 10 C 0.543 3.457 11 O -0.577 6.577 12 N -0.575 5.575 13 C 0.084 3.916 14 C 0.105 3.895 15 C 0.113 3.887 16 N -0.627 5.627 17 C -0.226 4.226 18 H 0.084 0.916 19 C -0.058 4.058 20 N -0.948 5.948 21 Si 0.971 3.029 22 H -0.266 1.266 23 H -0.300 1.300 24 H -0.292 1.292 25 C 0.152 3.848 26 H 0.135 0.865 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.131 0.869 30 H 0.134 0.866 31 H 0.037 0.963 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.247 0.753 38 H 0.028 0.972 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.008 -16.087 7.855 20.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C 0.343 3.657 4 O -0.422 6.422 5 C -0.160 4.160 6 H 0.167 0.833 7 C -0.122 4.122 8 C -0.187 4.187 9 H 0.155 0.845 10 C 0.332 3.668 11 O -0.458 6.458 12 N -0.304 5.304 13 C -0.059 4.059 14 C 0.000 4.000 15 C -0.013 4.013 16 N -0.354 5.354 17 C -0.354 4.354 18 H 0.102 0.898 19 C -0.251 4.251 20 N -0.597 5.597 21 Si 0.800 3.200 22 H -0.190 1.190 23 H -0.227 1.227 24 H -0.219 1.219 25 C 0.026 3.974 26 H 0.153 0.847 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.149 0.851 30 H 0.152 0.848 31 H 0.055 0.945 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.120 0.880 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.046 0.954 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.011 -15.940 7.608 20.302 hybrid contribution 0.001 1.576 -0.404 1.626 sum -10.010 -14.364 7.205 18.933 Atomic orbital electron populations 1.23619 0.74305 1.05962 1.02699 1.86484 1.25238 1.32017 1.83452 1.22636 0.90465 0.81363 0.71273 1.90676 1.67458 1.37340 1.46767 1.21664 0.87931 0.99022 1.07402 0.83309 1.23287 1.03172 0.96395 0.89364 1.22224 0.96598 0.96046 1.03849 0.84464 1.19839 0.84886 0.81811 0.80252 1.90639 1.67090 1.40762 1.47270 1.47342 1.23362 1.09804 1.49878 1.21879 0.99512 0.88581 0.95894 1.22650 0.84663 0.98201 0.94480 1.23110 0.95601 0.83974 0.98597 1.46368 1.63896 1.02435 1.22678 1.19337 1.29265 0.83590 1.03218 0.89785 1.25474 1.01141 1.00706 0.97807 1.69997 1.41946 1.28361 1.19370 0.85122 0.76953 0.80137 0.77760 1.19015 1.22718 1.21929 1.22504 0.96809 0.88717 0.89364 0.84723 0.91457 0.92173 0.85083 0.84751 0.94466 0.89127 0.89616 0.88025 0.92348 0.92349 0.94425 0.95409 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 16 2 O -0.36 -7.06 10.57 -51.44 -0.54 -7.60 16 3 C 0.50 11.70 7.74 71.24 0.55 12.25 16 4 O -0.53 -15.29 16.01 21.98 0.35 -14.94 16 5 C -0.14 -3.10 5.81 -11.54 -0.07 -3.17 16 6 H 0.15 3.32 7.67 -2.39 -0.02 3.31 16 7 C -0.09 -1.49 9.94 30.61 0.30 -1.19 16 8 C -0.17 -4.19 4.31 -11.53 -0.05 -4.24 16 9 H 0.14 3.56 6.79 -2.39 -0.02 3.55 16 10 C 0.54 17.70 7.46 87.66 0.65 18.36 16 11 O -0.58 -21.46 15.75 -3.05 -0.05 -21.50 16 12 N -0.57 -20.38 3.09 -828.33 -2.56 -22.94 16 13 C 0.08 2.93 8.95 127.77 1.14 4.08 16 14 C 0.11 4.07 4.51 46.75 0.21 4.28 16 15 C 0.11 4.40 8.41 86.48 0.73 5.13 16 16 N -0.63 -30.13 2.29 -717.35 -1.64 -31.77 16 17 C -0.23 -11.85 9.74 84.03 0.82 -11.04 16 18 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 19 C -0.06 -3.12 5.50 84.86 0.47 -2.65 16 20 N -0.95 -54.85 11.38 21.65 0.25 -54.60 16 21 Si 0.97 44.05 29.55 68.60 2.03 46.08 16 22 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 23 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 24 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 25 C 0.15 7.11 6.75 86.48 0.58 7.70 16 26 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 0.86 8.13 -2.39 -0.02 0.84 16 28 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 29 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.09 2.45 6.64 -2.39 -0.02 2.43 16 33 H 0.09 3.58 5.33 -2.39 -0.01 3.56 16 34 H 0.10 3.81 7.25 -2.39 -0.02 3.79 16 35 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 38 H 0.03 1.34 8.14 -2.39 -0.02 1.33 16 39 H 0.05 2.67 6.83 -2.39 -0.02 2.65 16 Total: -1.00 -67.95 329.56 5.43 -62.52 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 1.06 Total: 13.69 kcal Atomic # 6 Polarization: 24.53 SS G_CDS: 6.54 Total: 31.07 kcal Atomic # 7 Polarization: -105.36 SS G_CDS: -3.95 Total: -109.32 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -0.24 Total: -44.04 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -67.95 5.43 -62.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042535336.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.994 kcal (2) G-P(sol) polarization free energy of solvation -67.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds