Wall clock time and date at job start Tue Mar 31 2020 03:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34774 * 120.00153 * 2 1 4 4 O 1.21290 * 120.00113 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.00064 * 359.97438 * 3 2 1 6 6 C 1.53001 * 109.47295 * 180.02562 * 5 3 2 7 7 H 1.09003 * 110.75276 * 302.98592 * 6 5 3 8 8 C 1.54269 * 110.84553 * 66.45317 * 6 5 3 9 9 O 1.45369 * 106.62883 * 133.38414 * 8 6 5 10 10 C 1.34004 * 111.49562 * 2.27065 * 9 8 6 11 11 O 1.20825 * 125.69791 * 160.08422 * 10 9 8 12 12 C 1.51662 * 108.60454 * 340.34854 * 10 9 8 13 13 C 1.46504 * 120.00070 * 179.97438 * 2 1 3 14 14 C 1.53954 * 113.73797 * 36.67904 * 13 2 1 15 15 N 1.47579 * 86.11456 * 222.04820 * 14 13 2 16 16 C 1.36937 * 134.49204 * 204.64525 * 15 14 13 17 17 H 1.07998 * 120.00280 * 180.02562 * 16 15 14 18 18 C 1.38817 * 119.99750 * 359.97438 * 16 15 14 19 19 N 1.31614 * 120.00363 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99668 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47563 * 60.00003 * 20 18 16 22 22 H 1.48500 * 109.46961 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47252 * 299.99828 * 20 18 16 24 24 C 1.47577 * 91.01759 * 24.63591 * 15 14 13 25 25 H 1.09009 * 109.46696 * 90.00060 * 1 2 3 26 26 H 1.08994 * 109.47250 * 210.00008 * 1 2 3 27 27 H 1.09001 * 109.46845 * 330.00455 * 1 2 3 28 28 H 1.09002 * 109.46940 * 60.00350 * 5 3 2 29 29 H 1.08996 * 109.46911 * 300.00074 * 5 3 2 30 30 H 1.08998 * 110.02757 * 14.09099 * 8 6 5 31 31 H 1.09002 * 110.02569 * 252.67782 * 8 6 5 32 32 H 1.08997 * 110.71104 * 146.91129 * 12 10 9 33 33 H 1.09000 * 110.70805 * 270.14507 * 12 10 9 34 34 H 1.08999 * 112.94718 * 168.40935 * 13 2 1 35 35 H 1.09002 * 113.76603 * 336.34970 * 14 13 2 36 36 H 1.08998 * 113.76692 * 107.74698 * 14 13 2 37 37 H 0.96993 * 120.00362 * 180.02562 * 19 18 16 38 38 H 1.08998 * 113.77551 * 221.05828 * 24 15 14 39 39 H 1.09004 * 113.86512 * 89.67334 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3518 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3797 3.6352 -0.0011 7 1 3.0525 3.5685 0.8539 8 6 3.1742 3.6776 -1.3228 9 8 3.1607 5.0600 -1.7721 10 6 2.5247 5.8537 -0.8997 11 8 2.6415 7.0539 -0.8235 12 6 1.6387 4.9932 -0.0196 13 6 2.1975 -1.2688 0.0006 14 6 1.5286 -2.3710 -0.8408 15 7 1.8680 -3.2837 0.2681 16 6 2.0736 -4.6336 0.3713 17 1 2.3179 -5.0712 1.3279 18 6 1.9669 -5.4399 -0.7537 19 7 1.6687 -4.9068 -1.9196 20 14 2.2467 -7.2814 -0.6129 21 1 1.2636 -7.8603 0.3378 22 1 2.0761 -7.9114 -1.9468 23 1 3.6233 -7.5366 -0.1179 24 6 1.8972 -2.1574 1.2212 25 1 -0.3633 0.0000 -1.0278 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 0.7585 2.5302 0.8892 29 1 0.7591 2.5298 -0.8908 30 1 2.6968 3.0389 -2.0659 31 1 4.1999 3.3504 -1.1524 32 1 1.5725 5.4099 0.9855 33 1 0.6471 4.8852 -0.4591 34 1 3.2615 -1.1452 -0.2012 35 1 0.4570 -2.2281 -0.9798 36 1 2.0534 -2.5940 -1.7697 37 1 1.5938 -5.4702 -2.7056 38 1 2.7162 -2.2098 1.9386 39 1 0.9347 -1.9505 1.6890 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042615955.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:34 Heat of formation + Delta-G solvation = -55.920733 kcal Electronic energy + Delta-G solvation = -22168.441008 eV Core-core repulsion = 18692.515799 eV Total energy + Delta-G solvation = -3475.925209 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.28362 -39.92613 -38.00852 -37.50143 -34.61726 -34.44968 -32.06474 -29.41348 -27.99274 -27.27052 -26.64379 -24.90314 -23.42263 -21.76819 -21.46159 -19.70665 -18.56617 -17.66761 -17.25069 -16.90868 -16.74318 -16.28427 -15.89455 -15.68614 -14.86774 -14.53722 -13.96941 -13.91287 -13.79621 -13.52057 -13.17085 -12.65151 -12.57651 -12.42581 -12.22813 -11.84793 -11.69455 -11.63595 -11.47721 -11.38594 -10.94780 -10.77755 -10.69357 -10.44597 -10.33725 -10.16064 -9.65202 -9.60140 -8.87969 -8.28389 -6.99819 -5.86266 -3.19502 1.79966 2.66459 3.03272 3.08165 3.35242 3.39469 3.40438 3.65057 3.89546 4.21267 4.37215 4.40337 4.67157 4.90463 4.95846 5.07229 5.13210 5.15411 5.22726 5.33180 5.35367 5.42231 5.51504 5.64558 5.70019 5.76277 5.98394 6.06041 6.33604 6.48006 6.57510 6.65068 7.09624 7.20837 7.22478 7.42962 7.61942 7.87893 8.26012 8.94980 9.61007 10.46919 11.30809 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.048787 B = 0.003027 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.786524 B = 9246.552382 C = 9396.068464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.597 5.597 3 C 0.507 3.493 4 O -0.546 6.546 5 C -0.132 4.132 6 C -0.105 4.105 7 H 0.107 0.893 8 C 0.065 3.935 9 O -0.353 6.353 10 C 0.486 3.514 11 O -0.461 6.461 12 C -0.185 4.185 13 C 0.089 3.911 14 C 0.157 3.843 15 N -0.605 5.605 16 C -0.226 4.226 17 H 0.081 0.919 18 C -0.005 4.005 19 N -0.921 5.921 20 Si 0.915 3.085 21 H -0.285 1.285 22 H -0.289 1.289 23 H -0.283 1.283 24 C 0.108 3.892 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.032 0.968 36 H 0.077 0.923 37 H 0.256 0.744 38 H 0.047 0.953 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.470 16.204 3.685 17.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.329 5.329 3 C 0.294 3.706 4 O -0.424 6.424 5 C -0.172 4.172 6 C -0.124 4.124 7 H 0.126 0.874 8 C -0.009 4.009 9 O -0.269 6.269 10 C 0.327 3.673 11 O -0.345 6.345 12 C -0.223 4.223 13 C -0.014 4.014 14 C 0.031 3.969 15 N -0.332 5.332 16 C -0.353 4.353 17 H 0.099 0.901 18 C -0.202 4.202 19 N -0.567 5.567 20 Si 0.745 3.255 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.209 1.209 24 C -0.019 4.019 25 H 0.077 0.923 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.122 0.878 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.125 0.875 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.049 0.951 36 H 0.095 0.905 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.649 16.447 3.385 17.184 hybrid contribution -0.306 -1.312 0.161 1.356 sum -3.955 15.135 3.546 16.040 Atomic orbital electron populations 1.21825 0.79806 1.03086 1.02113 1.48070 1.06989 1.06334 1.71551 1.20504 0.88112 0.85327 0.76627 1.90695 1.13819 1.87427 1.50474 1.21772 0.98553 0.91651 1.05253 1.22249 0.97376 0.92924 0.99884 0.87438 1.24113 1.03694 0.77472 0.95587 1.86787 1.72169 1.21606 1.46344 1.23135 0.78380 0.87272 0.78515 1.90719 1.63851 1.12904 1.67029 1.23170 1.00889 0.95279 1.02984 1.24082 0.98069 0.79802 0.99460 1.22626 0.96551 0.83617 0.94118 1.45642 1.81096 1.02106 1.04346 1.18945 1.41311 0.80155 0.94901 0.90075 1.24805 1.01682 0.98333 0.95414 1.69790 1.53803 1.34409 0.98729 0.86161 0.78140 0.84481 0.76735 1.21112 1.21475 1.20949 1.22965 0.98080 0.87280 0.93583 0.92271 0.90215 0.91568 0.87824 0.88213 0.88555 0.87494 0.86914 0.86466 0.86599 0.95068 0.90501 0.93435 0.93516 0.94776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 8.84 59.85 0.53 1.30 16 2 N -0.60 -8.18 3.09 -175.74 -0.54 -8.73 16 3 C 0.51 6.33 7.45 -10.99 -0.08 6.25 16 4 O -0.55 -8.70 14.55 5.55 0.08 -8.62 16 5 C -0.13 -0.96 3.53 -27.88 -0.10 -1.06 16 6 C -0.11 -0.80 2.71 -89.05 -0.24 -1.04 16 7 H 0.11 0.88 8.05 -51.93 -0.42 0.46 16 8 C 0.07 0.61 6.47 37.82 0.24 0.86 16 9 O -0.35 -4.02 10.95 -38.28 -0.42 -4.44 16 10 C 0.49 5.32 8.62 36.48 0.31 5.63 16 11 O -0.46 -6.63 18.00 -18.37 -0.33 -6.96 16 12 C -0.18 -1.20 6.51 -26.51 -0.17 -1.38 16 13 C 0.09 1.63 4.40 -70.14 -0.31 1.32 16 14 C 0.16 3.47 6.93 -2.97 -0.02 3.45 16 15 N -0.61 -14.96 3.70 -178.09 -0.66 -15.62 16 16 C -0.23 -6.17 10.70 -15.06 -0.16 -6.33 16 17 H 0.08 2.14 7.83 -52.49 -0.41 1.72 16 18 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 19 N -0.92 -26.50 11.38 55.49 0.63 -25.86 16 20 Si 0.91 21.62 29.55 -169.99 -5.02 16.59 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.11 2.12 8.46 -2.98 -0.03 2.09 16 25 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 26 H 0.08 0.95 6.36 -51.93 -0.33 0.62 16 27 H 0.07 0.44 6.44 -51.93 -0.33 0.11 16 28 H 0.10 0.53 7.40 -51.93 -0.38 0.15 16 29 H 0.10 0.55 8.07 -51.93 -0.42 0.13 16 30 H 0.10 0.85 7.72 -51.93 -0.40 0.45 16 31 H 0.11 1.08 7.99 -51.93 -0.41 0.67 16 32 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.12 0.52 7.91 -51.93 -0.41 0.11 16 34 H 0.12 2.33 7.24 -51.93 -0.38 1.96 16 35 H 0.03 0.67 6.71 -51.93 -0.35 0.32 16 36 H 0.08 1.93 7.15 -51.93 -0.37 1.56 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.03 0.62 6.98 -51.93 -0.36 0.26 16 LS Contribution 321.25 15.07 4.84 4.84 Total: -1.00 -33.76 321.25 -6.92 -40.68 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -5.38 Total: -2.74 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: -0.12 Total: 10.85 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: -0.57 Total: -50.21 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.67 Total: -20.03 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.76 -6.92 -40.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042615955.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.237 kcal (2) G-P(sol) polarization free energy of solvation -33.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds