Wall clock time and date at job start Tue Mar 31 2020 03:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34774 * 120.00153 * 2 1 4 4 O 1.21290 * 120.00113 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.00064 * 359.97438 * 3 2 1 6 6 C 1.53001 * 109.47295 * 180.02562 * 5 3 2 7 7 H 1.09003 * 110.75276 * 302.98592 * 6 5 3 8 8 C 1.54269 * 110.84553 * 66.45317 * 6 5 3 9 9 O 1.45369 * 106.62883 * 133.38414 * 8 6 5 10 10 C 1.34004 * 111.49562 * 2.27065 * 9 8 6 11 11 O 1.20825 * 125.69791 * 160.08422 * 10 9 8 12 12 C 1.51662 * 108.60454 * 340.34854 * 10 9 8 13 13 C 1.46504 * 120.00070 * 179.97438 * 2 1 3 14 14 C 1.53954 * 113.73797 * 36.67904 * 13 2 1 15 15 N 1.47579 * 86.11456 * 222.04820 * 14 13 2 16 16 C 1.36937 * 134.49204 * 204.64525 * 15 14 13 17 17 H 1.07998 * 120.00280 * 180.02562 * 16 15 14 18 18 C 1.38817 * 119.99750 * 359.97438 * 16 15 14 19 19 N 1.31614 * 120.00363 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99668 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47563 * 60.00003 * 20 18 16 22 22 H 1.48500 * 109.46961 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47252 * 299.99828 * 20 18 16 24 24 C 1.47577 * 91.01759 * 24.63591 * 15 14 13 25 25 H 1.09009 * 109.46696 * 90.00060 * 1 2 3 26 26 H 1.08994 * 109.47250 * 210.00008 * 1 2 3 27 27 H 1.09001 * 109.46845 * 330.00455 * 1 2 3 28 28 H 1.09002 * 109.46940 * 60.00350 * 5 3 2 29 29 H 1.08996 * 109.46911 * 300.00074 * 5 3 2 30 30 H 1.08998 * 110.02757 * 14.09099 * 8 6 5 31 31 H 1.09002 * 110.02569 * 252.67782 * 8 6 5 32 32 H 1.08997 * 110.71104 * 146.91129 * 12 10 9 33 33 H 1.09000 * 110.70805 * 270.14507 * 12 10 9 34 34 H 1.08999 * 112.94718 * 168.40935 * 13 2 1 35 35 H 1.09002 * 113.76603 * 336.34970 * 14 13 2 36 36 H 1.08998 * 113.76692 * 107.74698 * 14 13 2 37 37 H 0.96993 * 120.00362 * 180.02562 * 19 18 16 38 38 H 1.08998 * 113.77551 * 221.05828 * 24 15 14 39 39 H 1.09004 * 113.86512 * 89.67334 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3518 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3797 3.6352 -0.0011 7 1 3.0525 3.5685 0.8539 8 6 3.1742 3.6776 -1.3228 9 8 3.1607 5.0600 -1.7721 10 6 2.5247 5.8537 -0.8997 11 8 2.6415 7.0539 -0.8235 12 6 1.6387 4.9932 -0.0196 13 6 2.1975 -1.2688 0.0006 14 6 1.5286 -2.3710 -0.8408 15 7 1.8680 -3.2837 0.2681 16 6 2.0736 -4.6336 0.3713 17 1 2.3179 -5.0712 1.3279 18 6 1.9669 -5.4399 -0.7537 19 7 1.6687 -4.9068 -1.9196 20 14 2.2467 -7.2814 -0.6129 21 1 1.2636 -7.8603 0.3378 22 1 2.0761 -7.9114 -1.9468 23 1 3.6233 -7.5366 -0.1179 24 6 1.8972 -2.1574 1.2212 25 1 -0.3633 0.0000 -1.0278 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 0.7585 2.5302 0.8892 29 1 0.7591 2.5298 -0.8908 30 1 2.6968 3.0389 -2.0659 31 1 4.1999 3.3504 -1.1524 32 1 1.5725 5.4099 0.9855 33 1 0.6471 4.8852 -0.4591 34 1 3.2615 -1.1452 -0.2012 35 1 0.4570 -2.2281 -0.9798 36 1 2.0534 -2.5940 -1.7697 37 1 1.5938 -5.4702 -2.7056 38 1 2.7162 -2.2098 1.9386 39 1 0.9347 -1.9505 1.6890 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042615955.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:32 Heat of formation + Delta-G solvation = -78.864891 kcal Electronic energy + Delta-G solvation = -22169.435941 eV Core-core repulsion = 18692.515799 eV Total energy + Delta-G solvation = -3476.920142 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.08558 -41.08055 -39.34974 -38.52464 -35.86308 -35.21241 -33.97953 -30.33595 -29.36317 -28.17195 -27.75279 -26.58884 -25.00909 -22.66030 -22.33666 -20.96556 -19.76804 -18.84409 -18.46151 -18.07133 -17.71145 -17.24118 -17.00485 -16.82555 -16.51604 -15.76590 -15.45527 -14.91100 -14.61563 -14.55314 -14.27189 -13.84809 -13.63247 -13.41380 -13.25659 -13.13393 -12.99461 -12.88722 -12.74654 -12.56004 -12.38858 -12.15578 -12.01963 -11.95624 -11.52800 -11.44303 -11.28771 -10.86844 -10.66292 -9.48158 -8.95493 -7.93489 -5.27251 0.99214 1.45797 1.48969 1.55069 1.71287 2.03476 2.27921 2.48766 2.99476 3.21902 3.27753 3.43099 3.58458 3.71860 3.85140 3.99344 4.29331 4.35603 4.41020 4.45909 4.51686 4.57920 4.70511 4.73389 4.77212 4.81936 4.89023 4.91555 5.07832 5.12631 5.20882 5.28093 5.47731 5.73512 5.82298 5.90449 6.39862 6.57796 6.89233 7.26717 7.57363 8.50901 9.23161 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.048787 B = 0.003027 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.786524 B = 9246.552382 C = 9396.068464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.601 5.601 3 C 0.502 3.498 4 O -0.587 6.587 5 C -0.119 4.119 6 C -0.098 4.098 7 H 0.101 0.899 8 C 0.061 3.939 9 O -0.375 6.375 10 C 0.479 3.521 11 O -0.506 6.506 12 C -0.162 4.162 13 C 0.117 3.883 14 C 0.160 3.840 15 N -0.639 5.639 16 C -0.237 4.237 17 H 0.084 0.916 18 C -0.064 4.064 19 N -0.952 5.952 20 Si 0.980 3.020 21 H -0.275 1.275 22 H -0.294 1.294 23 H -0.278 1.278 24 C 0.114 3.886 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.116 0.884 28 H 0.143 0.857 29 H 0.130 0.870 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.134 0.866 33 H 0.151 0.849 34 H 0.091 0.909 35 H 0.039 0.961 36 H 0.036 0.964 37 H 0.250 0.750 38 H 0.047 0.953 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.546 17.175 5.190 19.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.333 5.333 3 C 0.293 3.707 4 O -0.468 6.468 5 C -0.158 4.158 6 C -0.118 4.118 7 H 0.120 0.880 8 C -0.012 4.012 9 O -0.292 6.292 10 C 0.323 3.677 11 O -0.394 6.394 12 C -0.200 4.200 13 C 0.012 3.988 14 C 0.034 3.966 15 N -0.366 5.366 16 C -0.366 4.366 17 H 0.102 0.898 18 C -0.257 4.257 19 N -0.600 5.600 20 Si 0.808 3.192 21 H -0.201 1.201 22 H -0.220 1.220 23 H -0.204 1.204 24 C -0.012 4.012 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.134 0.866 28 H 0.161 0.839 29 H 0.148 0.852 30 H 0.121 0.879 31 H 0.108 0.892 32 H 0.152 0.848 33 H 0.169 0.831 34 H 0.109 0.891 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.750 17.445 4.922 19.017 hybrid contribution 0.389 -1.554 -0.312 1.632 sum -5.360 15.891 4.610 17.393 Atomic orbital electron populations 1.22088 0.77237 1.04731 1.03177 1.48033 1.08390 1.04890 1.71960 1.21478 0.87898 0.86420 0.74942 1.90696 1.16068 1.88039 1.51953 1.21835 0.98108 0.87334 1.08523 1.22198 0.97359 0.93912 0.98283 0.88049 1.24177 1.03404 0.76519 0.97107 1.86756 1.72609 1.22580 1.47233 1.23928 0.78287 0.87014 0.78503 1.90691 1.65302 1.14975 1.68388 1.23153 1.00848 0.92797 1.03179 1.23187 0.96810 0.81669 0.97159 1.22498 0.96641 0.84944 0.92506 1.45984 1.81491 1.02327 1.06780 1.19336 1.40302 0.81879 0.95048 0.89786 1.25629 1.02326 1.02558 0.95218 1.69977 1.55429 1.35463 0.99142 0.85138 0.78222 0.79455 0.76422 1.20063 1.21975 1.20437 1.23080 0.99156 0.85510 0.93470 0.91566 0.91911 0.86559 0.83898 0.85199 0.87911 0.89223 0.84801 0.83099 0.89076 0.94297 0.94588 0.94130 0.93490 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.15 8.84 127.77 1.13 2.28 16 2 N -0.60 -14.99 3.09 -828.30 -2.56 -17.55 16 3 C 0.50 11.15 7.45 87.66 0.65 11.81 16 4 O -0.59 -18.22 14.55 -3.06 -0.04 -18.26 16 5 C -0.12 -1.10 3.53 29.85 0.11 -1.00 16 6 C -0.10 -1.15 2.71 -9.78 -0.03 -1.18 16 7 H 0.10 1.37 8.05 -2.39 -0.02 1.35 16 8 C 0.06 1.07 6.47 72.41 0.47 1.54 16 9 O -0.37 -8.31 10.95 -49.63 -0.54 -8.85 16 10 C 0.48 9.76 8.62 71.54 0.62 10.37 16 11 O -0.51 -14.37 18.00 21.60 0.39 -13.99 16 12 C -0.16 -1.41 6.51 30.74 0.20 -1.21 16 13 C 0.12 4.26 4.40 46.75 0.21 4.47 16 14 C 0.16 7.21 6.93 86.48 0.60 7.81 16 15 N -0.64 -31.91 3.70 -717.34 -2.65 -34.56 16 16 C -0.24 -13.12 10.70 84.03 0.90 -12.22 16 17 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 18 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 19 N -0.95 -56.29 11.38 21.65 0.25 -56.05 16 20 Si 0.98 44.94 29.55 68.60 2.03 46.97 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 C 0.11 4.37 8.46 86.48 0.73 5.10 16 25 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 26 H 0.06 1.29 6.36 -2.39 -0.02 1.28 16 27 H 0.12 0.79 6.44 -2.39 -0.02 0.77 16 28 H 0.14 0.37 7.40 -2.39 -0.02 0.35 16 29 H 0.13 0.58 8.07 -2.39 -0.02 0.56 16 30 H 0.10 1.64 7.72 -2.39 -0.02 1.62 16 31 H 0.09 1.86 7.99 -2.39 -0.02 1.84 16 32 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.15 0.40 7.91 -2.39 -0.02 0.38 16 34 H 0.09 3.78 7.24 -2.39 -0.02 3.77 16 35 H 0.04 1.68 6.71 -2.39 -0.02 1.66 16 36 H 0.04 1.90 7.15 -2.39 -0.02 1.88 16 37 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 38 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.06 2.04 6.98 -2.38 -0.02 2.02 16 Total: -1.00 -78.46 321.25 3.97 -74.49 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: 1.06 Total: 3.14 kcal Atomic # 6 Polarization: 18.60 SS G_CDS: 6.05 Total: 24.65 kcal Atomic # 7 Polarization: -103.18 SS G_CDS: -4.97 Total: -108.15 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -0.20 Total: -41.10 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -78.46 3.97 -74.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042615955.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.378 kcal (2) G-P(sol) polarization free energy of solvation -78.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds