Wall clock time and date at job start Tue Mar 31 2020 02:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00021 * 2 1 4 4 H 1.48504 * 109.47278 * 95.67088 * 3 2 1 5 5 H 1.48503 * 109.47174 * 215.67022 * 3 2 1 6 6 H 1.48503 * 109.47196 * 335.66966 * 3 2 1 7 7 C 1.38815 * 119.99934 * 180.26844 * 2 1 3 8 8 H 1.07995 * 120.00010 * 21.22991 * 7 2 1 9 9 N 1.36939 * 119.99987 * 201.22974 * 7 2 1 10 10 C 1.47018 * 125.64722 * 196.12311 * 9 7 2 11 11 C 1.54322 * 107.27011 * 181.02492 * 10 9 7 12 12 H 1.08999 * 110.72047 * 140.55713 * 11 10 9 13 13 N 1.46505 * 110.72012 * 263.65649 * 11 10 9 14 14 C 1.34781 * 119.99383 * 273.54147 * 13 11 10 15 15 O 1.21278 * 120.00184 * 0.02562 * 14 13 11 16 16 C 1.50697 * 119.99801 * 179.97438 * 14 13 11 17 17 H 1.08999 * 115.51028 * 34.63282 * 16 14 13 18 18 C 1.52998 * 117.43501 * 180.02562 * 16 14 13 19 19 H 1.09004 * 119.80508 * 355.36711 * 18 16 14 20 20 C 1.54477 * 118.06872 * 199.10175 * 18 16 14 21 21 O 1.44420 * 104.80734 * 321.13406 * 20 18 16 22 22 C 1.44434 * 105.27194 * 319.48744 * 21 20 18 23 23 C 1.52998 * 117.43485 * 249.35309 * 16 14 13 24 24 H 1.09002 * 119.80823 * 4.63408 * 23 16 14 25 25 C 1.55159 * 102.94300 * 22.19169 * 11 10 9 26 26 H 1.08999 * 111.00205 * 82.61302 * 25 11 10 27 27 O 1.42896 * 111.00620 * 206.42127 * 25 11 10 28 28 C 1.47426 * 125.64642 * 15.81663 * 9 7 2 29 29 H 0.97001 * 119.99806 * 359.72657 * 1 2 3 30 30 H 1.08995 * 109.88323 * 300.43883 * 10 9 7 31 31 H 1.08993 * 109.88201 * 61.45518 * 10 9 7 32 32 H 0.96994 * 119.99916 * 93.54638 * 13 11 10 33 33 H 1.09004 * 110.37006 * 79.96390 * 20 18 16 34 34 H 1.08994 * 110.37497 * 202.29672 * 20 18 16 35 35 H 1.08997 * 110.36871 * 159.34392 * 22 21 20 36 36 H 1.08996 * 110.36593 * 281.56627 * 22 21 20 37 37 H 0.96699 * 114.00453 * 179.97438 * 27 25 11 38 38 H 1.08997 * 110.36779 * 274.74615 * 28 9 7 39 39 H 1.09010 * 110.36666 * 37.07000 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6175 1.9773 1.3932 5 1 3.4827 1.4777 -0.8164 6 1 1.3929 2.6843 -0.5768 7 6 2.0103 -1.2022 -0.0056 8 1 1.5252 -2.1041 -0.3485 9 7 3.3099 -1.2444 0.4236 10 6 4.2609 -2.3366 0.1701 11 6 5.5869 -1.9598 0.8639 12 1 6.0433 -2.8356 1.3251 13 7 6.5106 -1.3365 -0.0872 14 6 7.3221 -2.1050 -0.8405 15 8 7.2873 -3.3124 -0.7314 16 6 8.2719 -1.4640 -1.8193 17 1 8.6921 -0.5077 -1.5079 18 6 9.1657 -2.3916 -2.6448 19 1 9.1523 -3.4653 -2.4570 20 6 10.4277 -1.7898 -3.3018 21 8 10.0183 -0.4823 -3.7583 22 6 8.6908 -0.6658 -4.2970 23 6 7.9827 -1.6538 -3.3096 24 1 7.0757 -2.1701 -3.6241 25 6 5.1365 -0.9419 1.9449 26 1 4.7698 -1.4536 2.8347 27 8 6.1968 -0.0426 2.2751 28 6 3.9891 -0.1994 1.2110 29 1 -0.4850 0.8401 0.0040 30 1 3.8761 -3.2674 0.5867 31 1 4.4197 -2.4484 -0.9024 32 1 6.5382 -0.3709 -0.1746 33 1 11.2311 -1.7020 -2.5703 34 1 10.7461 -2.4035 -4.1444 35 1 8.1599 0.2856 -4.3300 36 1 8.7429 -1.1052 -5.2931 37 1 5.9622 0.6125 2.9465 38 1 4.3922 0.5700 0.5525 39 1 3.3000 0.2403 1.9322 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083708970.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:36 Heat of formation + Delta-G solvation = -56.639598 kcal Electronic energy + Delta-G solvation = -22797.095006 eV Core-core repulsion = 19321.138625 eV Total energy + Delta-G solvation = -3475.956381 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.84210 -39.46577 -37.98284 -35.43787 -34.50490 -33.89774 -31.92069 -29.18335 -28.86719 -27.87260 -26.45281 -24.32566 -22.48037 -21.12385 -20.88832 -20.06969 -19.82181 -17.94370 -17.28767 -16.95221 -16.21031 -16.04024 -15.56741 -15.45268 -15.22964 -14.57004 -14.27102 -14.04263 -13.40049 -13.34954 -13.13353 -12.92076 -12.82518 -12.33826 -11.99774 -11.78885 -11.73177 -11.45066 -11.34116 -11.01770 -10.65922 -10.50359 -10.41741 -10.18027 -9.98604 -9.69612 -9.65933 -9.44481 -8.82609 -8.81620 -7.17484 -6.01193 -3.32829 2.47734 3.06246 3.22919 3.39064 3.41322 3.49151 3.73530 4.13515 4.41614 4.43914 4.45175 4.56912 4.62559 4.86807 4.99096 5.07999 5.13171 5.14157 5.19363 5.33563 5.35710 5.42904 5.44992 5.50258 5.72269 5.79589 5.84965 5.88055 6.20907 6.36062 6.42210 6.44484 6.49066 6.80959 7.53746 7.69291 7.71840 8.23052 8.36371 8.73826 9.59607 10.04180 11.14731 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.020104 B = 0.004813 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.439917 B = 5816.513461 C = 6235.272506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.020 3.980 3 Si 0.888 3.112 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.302 1.302 7 C -0.243 4.243 8 H 0.096 0.904 9 N -0.604 5.604 10 C 0.127 3.873 11 C 0.144 3.856 12 H 0.098 0.902 13 N -0.696 5.696 14 C 0.546 3.454 15 O -0.546 6.546 16 C -0.145 4.145 17 H 0.125 0.875 18 C -0.169 4.169 19 H 0.136 0.864 20 C 0.072 3.928 21 O -0.374 6.374 22 C 0.072 3.928 23 C -0.171 4.171 24 H 0.134 0.866 25 C 0.081 3.919 26 H 0.084 0.916 27 O -0.562 6.562 28 C 0.078 3.922 29 H 0.264 0.736 30 H 0.047 0.953 31 H 0.041 0.959 32 H 0.406 0.594 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.380 0.620 38 H 0.037 0.963 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.626 -0.730 -2.569 18.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.178 4.178 3 Si 0.718 3.282 4 H -0.215 1.215 5 H -0.203 1.203 6 H -0.230 1.230 7 C -0.369 4.369 8 H 0.114 0.886 9 N -0.332 5.332 10 C 0.001 3.999 11 C 0.039 3.961 12 H 0.116 0.884 13 N -0.346 5.346 14 C 0.332 3.668 15 O -0.424 6.424 16 C -0.166 4.166 17 H 0.143 0.857 18 C -0.187 4.187 19 H 0.153 0.847 20 C -0.004 4.004 21 O -0.292 6.292 22 C -0.005 4.005 23 C -0.190 4.190 24 H 0.152 0.848 25 C 0.020 3.980 26 H 0.101 0.899 27 O -0.366 6.366 28 C -0.048 4.048 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.241 0.759 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.092 0.908 37 H 0.227 0.773 38 H 0.054 0.946 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 18.787 -1.671 -2.963 19.093 hybrid contribution -0.214 1.635 0.360 1.688 sum 18.573 -0.036 -2.603 18.755 Atomic orbital electron populations 1.69824 1.05467 1.26607 1.53305 1.24955 0.95189 0.97363 1.00311 0.86975 0.79022 0.84690 0.77484 1.21473 1.20265 1.23002 1.18678 0.83365 0.95739 1.39156 0.88647 1.44638 1.09394 1.18171 1.61045 1.21804 0.87237 0.92552 0.98327 1.22034 0.90189 0.95484 0.88422 0.88357 1.45600 1.38506 1.10697 1.39762 1.19376 0.80077 0.86756 0.80576 1.90679 1.69418 1.14120 1.68150 1.22078 1.00745 1.01742 0.92028 0.85704 1.23986 0.92319 0.99977 1.02468 0.84658 1.22985 0.95647 0.84083 0.97734 1.89167 1.31308 1.28526 1.80241 1.23349 0.82350 0.99582 0.95201 1.24486 1.00778 1.02367 0.91370 0.84827 1.23408 0.87343 0.90735 0.96506 0.89855 1.86396 1.38711 1.48138 1.63382 1.22729 0.94010 0.93161 0.94885 0.92622 0.93473 0.94123 0.75915 0.88490 0.90847 0.88286 0.90809 0.77266 0.94602 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.59 13.97 55.49 0.78 -26.81 16 2 C 0.02 0.58 5.44 -17.43 -0.09 0.48 16 3 Si 0.89 21.96 24.23 -169.99 -4.12 17.84 16 4 H -0.29 -6.72 6.40 56.52 0.36 -6.36 16 5 H -0.28 -6.73 6.45 56.52 0.36 -6.36 16 6 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 7 C -0.24 -6.76 10.60 -15.06 -0.16 -6.92 16 8 H 0.10 2.84 8.06 -52.49 -0.42 2.41 16 9 N -0.60 -14.18 3.24 -169.94 -0.55 -14.73 16 10 C 0.13 2.56 6.98 -3.07 -0.02 2.54 16 11 C 0.14 2.45 3.13 -66.09 -0.21 2.24 16 12 H 0.10 1.63 7.69 -51.93 -0.40 1.23 16 13 N -0.70 -11.04 4.79 -52.03 -0.25 -11.29 16 14 C 0.55 8.59 7.61 -10.99 -0.08 8.51 16 15 O -0.55 -10.10 16.07 5.56 0.09 -10.01 16 16 C -0.14 -1.82 5.53 -91.78 -0.51 -2.33 16 17 H 0.13 1.46 8.04 -51.93 -0.42 1.05 16 18 C -0.17 -1.85 6.64 -89.08 -0.59 -2.44 16 19 H 0.14 1.55 7.81 -51.93 -0.41 1.15 16 20 C 0.07 0.65 7.53 37.93 0.29 0.94 16 21 O -0.37 -4.13 11.30 -35.23 -0.40 -4.52 16 22 C 0.07 0.69 7.58 39.10 0.30 0.99 16 23 C -0.17 -1.92 7.12 -87.91 -0.63 -2.55 16 24 H 0.13 1.56 8.14 -51.93 -0.42 1.13 16 25 C 0.08 1.29 4.23 -24.46 -0.10 1.19 16 26 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 27 O -0.56 -7.68 12.64 -35.23 -0.45 -8.13 16 28 C 0.08 1.59 4.39 -2.41 -0.01 1.58 16 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.04 0.87 8.05 -51.93 -0.42 0.45 16 32 H 0.41 6.14 8.21 -40.82 -0.34 5.81 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.38 3.67 9.12 45.56 0.42 4.08 16 38 H 0.04 0.77 5.56 -51.93 -0.29 0.48 16 39 H 0.06 1.39 6.25 -51.92 -0.32 1.07 16 LS Contribution 317.07 15.07 4.78 4.78 Total: -1.00 -33.38 317.07 -6.71 -40.09 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -4.77 Total: 8.58 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -1.82 Total: 4.22 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -0.02 Total: -52.84 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.75 Total: -22.66 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.12 Total: 17.84 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.38 -6.71 -40.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083708970.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.548 kcal (2) G-P(sol) polarization free energy of solvation -33.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds