Wall clock time and date at job start Tue Mar 31 2020 03:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.87113 * 2 1 4 4 C 1.54316 * 110.01285 * 238.89788 * 2 1 3 5 5 H 1.09006 * 110.72163 * 336.68361 * 4 2 1 6 6 N 1.46502 * 110.72041 * 99.77749 * 4 2 1 7 7 C 1.34775 * 120.00159 * 205.00389 * 6 4 2 8 8 O 1.21735 * 119.99881 * 359.97438 * 7 6 4 9 9 C 1.46374 * 120.00123 * 180.02562 * 7 6 4 10 10 C 1.33976 * 119.23199 * 359.97438 * 9 7 6 11 11 O 1.35007 * 121.69082 * 180.35049 * 10 9 7 12 12 C 1.43248 * 116.76288 * 342.82132 * 11 10 9 13 13 C 1.53554 * 108.08623 * 45.48983 * 12 11 10 14 14 O 1.36220 * 119.23421 * 179.72758 * 9 7 6 15 15 C 1.55154 * 102.94833 * 218.31900 * 4 2 1 16 16 C 1.54916 * 101.58051 * 35.50038 * 15 4 2 17 17 N 1.47025 * 109.88203 * 121.01516 * 2 1 3 18 18 C 1.36942 * 125.64778 * 298.49564 * 17 2 1 19 19 H 1.08008 * 119.99685 * 349.85233 * 18 17 2 20 20 C 1.38807 * 119.99988 * 169.85840 * 18 17 2 21 21 N 1.31612 * 120.00094 * 350.47350 * 20 18 17 22 22 Si 1.86804 * 119.99815 * 170.47701 * 20 18 17 23 23 H 1.48494 * 109.47252 * 94.13284 * 22 20 18 24 24 H 1.48507 * 109.46897 * 214.13389 * 22 20 18 25 25 H 1.48505 * 109.47320 * 334.12969 * 22 20 18 26 26 H 1.09000 * 109.47075 * 300.43879 * 1 2 3 27 27 H 1.08998 * 109.47010 * 60.43984 * 1 2 3 28 28 H 1.09003 * 109.46935 * 180.44080 * 1 2 3 29 29 H 0.96998 * 119.99840 * 24.99892 * 6 4 2 30 30 H 1.08003 * 119.15464 * 0.38184 * 10 9 7 31 31 H 1.08993 * 109.73889 * 165.13225 * 12 11 10 32 32 H 1.09000 * 109.74110 * 285.84591 * 12 11 10 33 33 H 1.09000 * 109.75618 * 61.46745 * 13 12 11 34 34 H 1.09000 * 109.75225 * 182.16834 * 13 12 11 35 35 H 1.09002 * 111.00206 * 277.43278 * 15 4 2 36 36 H 1.08990 * 111.01063 * 153.57566 * 15 4 2 37 37 H 1.08998 * 110.36828 * 204.15773 * 16 15 4 38 38 H 1.08998 * 110.36556 * 81.82890 * 16 15 4 39 39 H 0.97000 * 120.00138 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0582 -0.7490 -1.2415 5 1 1.3104 -1.4473 -1.6177 6 7 2.4542 0.1968 -2.2879 7 6 2.4584 -0.1896 -3.5791 8 8 2.1336 -1.3247 -3.8758 9 6 2.8547 0.7552 -4.6245 10 6 3.2098 2.0004 -4.2806 11 8 3.5770 2.9139 -5.2044 12 6 3.9366 2.4145 -6.4980 13 6 2.8835 1.3792 -6.9188 14 8 2.8587 0.3464 -5.9239 15 6 3.2919 -1.5108 -0.6893 16 6 2.8177 -1.8763 0.7395 17 7 2.0301 -0.7124 1.1849 18 6 1.8022 -0.3540 2.4868 19 1 1.3534 0.6020 2.7131 20 6 2.1482 -1.2192 3.5156 21 7 2.5187 -2.4521 3.2420 22 14 2.0880 -0.6336 5.2885 23 1 0.7745 -0.9893 5.8829 24 1 3.1746 -1.2861 6.0624 25 1 2.2672 0.8400 5.3295 26 1 -0.3633 0.5206 0.8860 27 1 -0.3633 0.5070 -0.8939 28 1 -0.3633 -1.0277 0.0079 29 1 2.7133 1.1011 -2.0514 30 1 3.2025 2.2805 -3.2375 31 1 3.9551 3.2337 -7.2167 32 1 4.9181 1.9429 -6.4508 33 1 1.9051 1.8549 -6.9853 34 1 3.1521 0.9525 -7.8852 35 1 4.1682 -0.8634 -0.6564 36 1 3.4922 -2.4074 -1.2757 37 1 3.6743 -2.0284 1.3962 38 1 2.1937 -2.7697 0.7152 39 1 2.7601 -3.0569 3.9610 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088455099.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:53 Heat of formation + Delta-G solvation = -57.657165 kcal Electronic energy + Delta-G solvation = -22564.720748 eV Core-core repulsion = 19088.720241 eV Total energy + Delta-G solvation = -3476.000506 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.27927 -39.49095 -37.65215 -37.01501 -34.21496 -32.65663 -31.64370 -30.40009 -29.38752 -28.21523 -25.68680 -24.63883 -23.99349 -21.96949 -20.38209 -20.04985 -19.50640 -18.52289 -18.17366 -16.77545 -16.62035 -15.82294 -15.51587 -15.13008 -14.80515 -14.57398 -14.41621 -14.18177 -13.90765 -13.69907 -13.29382 -12.80554 -12.50487 -12.11976 -12.04180 -11.56067 -11.32161 -11.12143 -10.94590 -10.92783 -10.76316 -10.62017 -10.40712 -10.07129 -9.85027 -9.76585 -9.63569 -8.78591 -8.59536 -8.37794 -6.85134 -5.75766 -3.09547 1.18142 2.53503 2.87725 3.29088 3.38851 3.44530 3.46466 3.69748 3.98448 4.47748 4.49320 4.58340 4.61798 4.92632 4.98602 5.15917 5.24525 5.41947 5.49703 5.55130 5.64124 5.81062 6.11551 6.19481 6.29518 6.34296 6.46346 6.48889 6.60904 6.68420 6.87764 7.02897 7.13788 7.48982 7.56903 7.64500 7.77310 8.23155 8.30947 9.16831 9.78863 10.45388 11.36872 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.036126 B = 0.003603 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.874059 B = 7769.152841 C = 8011.507240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.036 0.964 4 C 0.137 3.863 5 H 0.098 0.902 6 N -0.708 5.708 7 C 0.573 3.427 8 O -0.523 6.523 9 C -0.063 4.063 10 C 0.000 4.000 11 O -0.301 6.301 12 C 0.014 3.986 13 C 0.018 3.982 14 O -0.285 6.285 15 C -0.156 4.156 16 C 0.174 3.826 17 N -0.594 5.594 18 C -0.228 4.228 19 H 0.076 0.924 20 C -0.005 4.005 21 N -0.916 5.916 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 H 0.055 0.945 27 H 0.037 0.963 28 H 0.053 0.947 29 H 0.396 0.604 30 H 0.180 0.820 31 H 0.121 0.879 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.121 0.879 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.030 0.970 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.523 10.499 -18.136 21.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.053 0.947 4 C 0.034 3.966 5 H 0.116 0.884 6 N -0.361 5.361 7 C 0.359 3.641 8 O -0.400 6.400 9 C -0.112 4.112 10 C -0.066 4.066 11 O -0.214 6.214 12 C -0.062 4.062 13 C -0.058 4.058 14 O -0.199 6.199 15 C -0.195 4.195 16 C 0.049 3.951 17 N -0.319 5.319 18 C -0.356 4.356 19 H 0.094 0.906 20 C -0.202 4.202 21 N -0.562 5.562 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.206 1.206 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.231 0.769 30 H 0.197 0.803 31 H 0.139 0.861 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.139 0.861 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.048 0.952 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.334 9.579 -18.183 20.684 hybrid contribution 0.068 0.741 0.890 1.160 sum 2.402 10.321 -17.293 20.281 Atomic orbital electron populations 1.22237 0.97710 1.01575 0.99947 1.21016 0.92676 0.94794 0.86810 0.94680 1.22200 0.97772 0.90689 0.85989 0.88399 1.45903 1.68736 1.16141 1.05305 1.17077 0.78505 0.86756 0.81792 1.90851 1.47466 1.19601 1.82094 1.20528 1.09567 0.95040 0.86111 1.23166 0.99549 0.89138 0.94744 1.86103 1.80769 1.33301 1.21192 1.23721 0.98497 0.99681 0.84287 1.23687 0.99870 0.90059 0.92233 1.86480 1.89685 1.32434 1.11301 1.23419 0.96754 0.99581 0.99765 1.21418 0.95642 0.89483 0.88576 1.44496 1.58204 1.29149 1.00084 1.18956 1.36323 0.99974 0.80390 0.90592 1.24825 1.02025 0.95377 0.97988 1.69953 1.51025 1.04384 1.30873 0.86145 0.77278 0.77846 0.84703 1.21631 1.21640 1.20612 0.92560 0.94406 0.92820 0.76869 0.80304 0.86149 0.90048 0.90410 0.86100 0.91888 0.91670 0.90957 0.95200 0.93643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.15 37.16 0.34 -2.55 16 2 C 0.16 3.05 3.47 -66.95 -0.23 2.82 16 3 H 0.04 0.66 7.72 -51.93 -0.40 0.26 16 4 C 0.14 2.48 2.84 -66.10 -0.19 2.29 16 5 H 0.10 1.92 7.26 -51.93 -0.38 1.54 16 6 N -0.71 -10.37 5.11 -53.43 -0.27 -10.65 16 7 C 0.57 9.25 7.73 -12.99 -0.10 9.15 16 8 O -0.52 -10.67 16.56 -10.06 -0.17 -10.83 16 9 C -0.06 -0.85 6.61 -37.81 -0.25 -1.10 16 10 C 0.00 0.00 10.57 29.23 0.31 0.31 16 11 O -0.30 -2.92 10.47 -30.84 -0.32 -3.24 16 12 C 0.01 0.09 7.29 37.45 0.27 0.37 16 13 C 0.02 0.14 7.32 37.45 0.27 0.41 16 14 O -0.29 -3.83 10.29 -45.77 -0.47 -4.30 16 15 C -0.16 -3.02 6.78 -24.58 -0.17 -3.18 16 16 C 0.17 4.17 5.42 -2.53 -0.01 4.15 16 17 N -0.59 -14.55 3.13 -162.57 -0.51 -15.06 16 18 C -0.23 -6.13 9.83 -15.06 -0.15 -6.28 16 19 H 0.08 1.97 7.85 -52.48 -0.41 1.56 16 20 C -0.01 -0.14 5.40 -17.44 -0.09 -0.24 16 21 N -0.92 -26.49 10.69 55.49 0.59 -25.90 16 22 Si 0.91 21.67 29.56 -169.99 -5.03 16.64 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H 0.06 1.08 8.02 -51.93 -0.42 0.67 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.40 4.58 6.21 -40.82 -0.25 4.33 16 30 H 0.18 1.45 6.08 -52.48 -0.32 1.13 16 31 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.07 1.91 6.94 -51.93 -0.36 1.55 16 38 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 39 H 0.25 7.13 8.31 -40.82 -0.34 6.80 16 LS Contribution 321.13 15.07 4.84 4.84 Total: -1.00 -33.70 321.13 -6.81 -40.51 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -5.47 Total: 1.84 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 0.00 Total: 6.15 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.19 Total: -51.61 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.96 Total: -18.37 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.70 -6.81 -40.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088455099.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.149 kcal (2) G-P(sol) polarization free energy of solvation -33.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds