Wall clock time and date at job start Tue Mar 31 2020 02:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00115 * 2 1 4 4 H 1.48502 * 109.47702 * 270.00277 * 3 2 1 5 5 H 1.48496 * 109.47292 * 30.00351 * 3 2 1 6 6 H 1.48503 * 109.47234 * 150.00185 * 3 2 1 7 7 C 1.38813 * 119.99670 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00368 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99793 * 179.97438 * 7 2 1 10 10 C 1.46505 * 120.00115 * 179.97438 * 9 7 2 11 11 C 1.53774 * 113.61386 * 154.99756 * 10 9 7 12 12 C 1.53782 * 87.08078 * 89.11734 * 11 10 9 13 13 C 1.53008 * 113.61500 * 139.97832 * 12 11 10 14 14 N 1.46496 * 109.47119 * 176.52877 * 13 12 11 15 15 C 1.34767 * 120.00060 * 179.97438 * 14 13 12 16 16 O 1.21736 * 120.00290 * 0.02562 * 15 14 13 17 17 C 1.46382 * 120.00281 * 179.97438 * 15 14 13 18 18 C 1.33981 * 119.22960 * 0.02562 * 17 15 14 19 19 O 1.34994 * 121.68684 * 180.36650 * 18 17 15 20 20 C 1.43252 * 116.76481 * 342.82229 * 19 18 17 21 21 C 1.53546 * 108.08831 * 45.48898 * 20 19 18 22 22 O 1.36218 * 119.23326 * 180.02562 * 17 15 14 23 23 C 1.53780 * 87.17108 * 25.39065 * 12 11 10 24 24 H 0.97002 * 119.99796 * 0.02562 * 1 2 3 25 25 H 0.97003 * 120.00304 * 359.97438 * 9 7 2 26 26 H 1.08997 * 112.84740 * 23.79996 * 10 9 7 27 27 H 1.09003 * 113.61947 * 334.57081 * 11 10 9 28 28 H 1.09003 * 113.61168 * 203.66493 * 11 10 9 29 29 H 1.08993 * 113.61425 * 270.79667 * 12 11 10 30 30 H 1.08997 * 109.46833 * 56.52980 * 13 12 11 31 31 H 1.09001 * 109.47093 * 296.53131 * 13 12 11 32 32 H 0.97005 * 119.99961 * 359.97438 * 14 13 12 33 33 H 1.07998 * 119.15485 * 0.35017 * 18 17 15 34 34 H 1.08996 * 109.73732 * 285.83605 * 20 19 18 35 35 H 1.09005 * 109.73644 * 165.13344 * 20 19 18 36 36 H 1.09004 * 109.75354 * 182.21784 * 21 20 19 37 37 H 1.08992 * 109.75815 * 61.47136 * 21 20 19 38 38 H 1.09000 * 113.61673 * 89.16016 * 23 12 11 39 39 H 1.09008 * 113.60924 * 220.06282 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.5257 -2.3661 -0.5972 12 6 6.0129 -2.0235 0.8206 13 6 7.3474 -2.6775 1.1849 14 7 7.7652 -2.2269 2.5147 15 6 8.9191 -2.6760 3.0467 16 8 9.6146 -3.4557 2.4220 17 6 9.3368 -2.2254 4.3754 18 6 8.5599 -1.3666 5.0492 19 8 8.9006 -0.9132 6.2742 20 6 9.9034 -1.6536 6.9802 21 6 11.0488 -1.9562 6.0034 22 8 10.5063 -2.6889 4.8978 23 6 4.7877 -2.7909 1.3448 24 1 -0.4850 0.8401 -0.0004 25 1 3.8646 -0.3622 -0.0014 26 1 3.5276 -3.2971 -0.4060 27 1 5.6404 -1.5476 -1.3079 28 1 5.9117 -3.3130 -0.9746 29 1 5.9891 -0.9572 1.0448 30 1 8.1027 -2.3946 0.4516 31 1 7.2321 -3.7613 1.1880 32 1 7.2112 -1.6053 3.0124 33 1 7.6376 -1.0282 4.6007 34 1 9.4793 -2.5868 7.3507 35 1 10.2784 -1.0618 7.8152 36 1 11.8109 -2.5541 6.5031 37 1 11.4860 -1.0232 5.6479 38 1 4.9715 -3.8541 1.4993 39 1 4.3072 -2.3147 2.1996 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090905607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:10 Heat of formation + Delta-G solvation = -50.520659 kcal Electronic energy + Delta-G solvation = -21749.573112 eV Core-core repulsion = 18273.882067 eV Total energy + Delta-G solvation = -3475.691044 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -41.42336 -39.70141 -38.60145 -37.30042 -34.88180 -33.43169 -32.39299 -30.72134 -29.48494 -27.24626 -25.68566 -25.21504 -23.57209 -22.20551 -21.71803 -19.85002 -19.02263 -18.64794 -18.29209 -17.65840 -16.76923 -16.00634 -15.73776 -15.44290 -15.18637 -14.82503 -14.59599 -14.55247 -14.35203 -13.88699 -13.56065 -13.40486 -12.84375 -12.66072 -12.47178 -12.08839 -11.63228 -11.43868 -11.39143 -11.06641 -10.94615 -10.54789 -10.32836 -10.20848 -9.96510 -9.70699 -9.58035 -9.21052 -8.95152 -8.54017 -7.34330 -5.83221 -3.19659 1.00871 2.34939 2.75186 3.06209 3.31104 3.34574 3.40597 3.49051 3.87127 4.37947 4.43031 4.50601 4.52521 4.74859 4.84983 4.88701 4.90227 5.03701 5.05933 5.35606 5.35881 5.45503 5.48944 5.71578 5.80667 5.86993 6.09118 6.18164 6.21016 6.38021 6.44786 6.57871 6.68849 6.85088 6.90926 7.33225 7.94648 8.02216 8.36474 9.14099 9.86236 10.05311 11.34898 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.022226 B = 0.003399 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.459626 B = 8235.247349 C = 9053.089005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.247 4.247 8 H 0.092 0.908 9 N -0.730 5.730 10 C 0.172 3.828 11 C -0.148 4.148 12 C -0.125 4.125 13 C 0.133 3.867 14 N -0.717 5.717 15 C 0.573 3.427 16 O -0.526 6.526 17 C -0.070 4.070 18 C 0.007 3.993 19 O -0.299 6.299 20 C 0.013 3.987 21 C 0.018 3.982 22 O -0.286 6.286 23 C -0.168 4.168 24 H 0.260 0.740 25 H 0.362 0.638 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.400 0.600 33 H 0.180 0.820 34 H 0.082 0.918 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.172 -2.838 12.325 24.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.190 4.190 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.377 4.377 8 H 0.110 0.890 9 N -0.370 5.370 10 C 0.061 3.939 11 C -0.187 4.187 12 C -0.144 4.144 13 C 0.011 3.989 14 N -0.372 5.372 15 C 0.359 3.641 16 O -0.403 6.403 17 C -0.119 4.119 18 C -0.060 4.060 19 O -0.211 6.211 20 C -0.062 4.062 21 C -0.058 4.058 22 O -0.200 6.200 23 C -0.209 4.209 24 H 0.070 0.930 25 H 0.195 0.805 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.235 0.765 33 H 0.197 0.803 34 H 0.101 0.899 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 21.426 -3.454 11.891 24.747 hybrid contribution 0.439 1.641 0.528 1.779 sum 21.865 -1.814 12.419 25.211 Atomic orbital electron populations 1.69699 1.05113 1.25922 1.57162 1.24686 0.95251 0.97233 1.01867 0.86558 0.79109 0.84998 0.77853 1.20998 1.21666 1.20411 1.19115 0.80401 0.94853 1.43346 0.89009 1.42524 1.03967 1.01619 1.88908 1.21039 0.90112 0.89918 0.92849 1.23458 0.98714 1.01689 0.94868 1.22781 0.92523 1.00127 0.98944 1.21536 0.96002 0.99407 0.81960 1.45889 1.22353 1.48679 1.20247 1.17107 0.81508 0.81434 0.84015 1.90849 1.53304 1.34213 1.61979 1.20434 0.90148 1.05380 0.95915 1.23198 0.98569 0.98685 0.85522 1.86120 1.55864 1.51892 1.27263 1.23748 0.89055 0.98471 0.94951 1.23680 0.96056 0.98644 0.87416 1.86433 1.34893 1.51461 1.47207 1.23905 0.96437 0.98919 1.01603 0.92957 0.80524 0.90980 0.91335 0.89873 0.89128 0.91392 0.90979 0.76453 0.80316 0.89934 0.85995 0.85987 0.90411 0.90823 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.73 13.97 55.49 0.78 -27.95 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 3 Si 0.88 21.44 27.73 -169.99 -4.71 16.73 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.24 6.52 56.52 0.37 -5.87 16 7 C -0.25 -6.77 10.45 -15.06 -0.16 -6.93 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 9 N -0.73 -16.43 5.11 -52.55 -0.27 -16.70 16 10 C 0.17 3.10 4.57 -67.03 -0.31 2.79 16 11 C -0.15 -2.10 7.39 -25.92 -0.19 -2.30 16 12 C -0.13 -1.65 3.62 -89.80 -0.33 -1.97 16 13 C 0.13 1.63 5.50 -4.04 -0.02 1.61 16 14 N -0.72 -8.22 5.49 -61.71 -0.34 -8.56 16 15 C 0.57 7.88 7.73 -12.99 -0.10 7.78 16 16 O -0.53 -9.33 16.92 -10.06 -0.17 -9.50 16 17 C -0.07 -0.83 6.61 -37.80 -0.25 -1.08 16 18 C 0.01 0.06 10.57 29.24 0.31 0.37 16 19 O -0.30 -2.71 10.47 -30.81 -0.32 -3.04 16 20 C 0.01 0.08 7.29 37.44 0.27 0.35 16 21 C 0.02 0.13 7.31 37.44 0.27 0.40 16 22 O -0.29 -3.46 10.28 -45.77 -0.47 -3.94 16 23 C -0.17 -2.53 7.44 -25.83 -0.19 -2.72 16 24 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 25 H 0.36 7.96 5.76 -40.82 -0.24 7.72 16 26 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 29 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.91 7.87 -51.93 -0.41 0.50 16 32 H 0.40 3.67 6.31 -40.82 -0.26 3.41 16 33 H 0.18 1.28 6.08 -52.49 -0.32 0.96 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.12 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 1.00 7.92 -51.93 -0.41 0.59 16 39 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 LS Contribution 326.34 15.07 4.92 4.92 Total: -1.00 -34.92 326.34 -6.82 -41.75 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.45 Total: 7.91 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -0.79 Total: -1.62 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: 0.17 Total: -53.21 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.96 Total: -16.47 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.71 Total: 16.73 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.92 -6.82 -41.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090905607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.775 kcal (2) G-P(sol) polarization free energy of solvation -34.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds