Wall clock time and date at job start Tue Mar 31 2020 02:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00115 * 2 1 4 4 H 1.48502 * 109.47702 * 270.00277 * 3 2 1 5 5 H 1.48496 * 109.47292 * 30.00351 * 3 2 1 6 6 H 1.48503 * 109.47234 * 150.00185 * 3 2 1 7 7 C 1.38813 * 119.99670 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00368 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99793 * 179.97438 * 7 2 1 10 10 C 1.46505 * 120.00115 * 179.97438 * 9 7 2 11 11 C 1.53774 * 113.61386 * 154.99756 * 10 9 7 12 12 C 1.53782 * 87.08078 * 89.11734 * 11 10 9 13 13 C 1.53008 * 113.61500 * 139.97832 * 12 11 10 14 14 N 1.46496 * 109.47119 * 176.52877 * 13 12 11 15 15 C 1.34767 * 120.00060 * 179.97438 * 14 13 12 16 16 O 1.21736 * 120.00290 * 0.02562 * 15 14 13 17 17 C 1.46382 * 120.00281 * 179.97438 * 15 14 13 18 18 C 1.33981 * 119.22960 * 0.02562 * 17 15 14 19 19 O 1.34994 * 121.68684 * 180.36650 * 18 17 15 20 20 C 1.43252 * 116.76481 * 342.82229 * 19 18 17 21 21 C 1.53546 * 108.08831 * 45.48898 * 20 19 18 22 22 O 1.36218 * 119.23326 * 180.02562 * 17 15 14 23 23 C 1.53780 * 87.17108 * 25.39065 * 12 11 10 24 24 H 0.97002 * 119.99796 * 0.02562 * 1 2 3 25 25 H 0.97003 * 120.00304 * 359.97438 * 9 7 2 26 26 H 1.08997 * 112.84740 * 23.79996 * 10 9 7 27 27 H 1.09003 * 113.61947 * 334.57081 * 11 10 9 28 28 H 1.09003 * 113.61168 * 203.66493 * 11 10 9 29 29 H 1.08993 * 113.61425 * 270.79667 * 12 11 10 30 30 H 1.08997 * 109.46833 * 56.52980 * 13 12 11 31 31 H 1.09001 * 109.47093 * 296.53131 * 13 12 11 32 32 H 0.97005 * 119.99961 * 359.97438 * 14 13 12 33 33 H 1.07998 * 119.15485 * 0.35017 * 18 17 15 34 34 H 1.08996 * 109.73732 * 285.83605 * 20 19 18 35 35 H 1.09005 * 109.73644 * 165.13344 * 20 19 18 36 36 H 1.09004 * 109.75354 * 182.21784 * 21 20 19 37 37 H 1.08992 * 109.75815 * 61.47136 * 21 20 19 38 38 H 1.09000 * 113.61673 * 89.16016 * 23 12 11 39 39 H 1.09008 * 113.60924 * 220.06282 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.5257 -2.3661 -0.5972 12 6 6.0129 -2.0235 0.8206 13 6 7.3474 -2.6775 1.1849 14 7 7.7652 -2.2269 2.5147 15 6 8.9191 -2.6760 3.0467 16 8 9.6146 -3.4557 2.4220 17 6 9.3368 -2.2254 4.3754 18 6 8.5599 -1.3666 5.0492 19 8 8.9006 -0.9132 6.2742 20 6 9.9034 -1.6536 6.9802 21 6 11.0488 -1.9562 6.0034 22 8 10.5063 -2.6889 4.8978 23 6 4.7877 -2.7909 1.3448 24 1 -0.4850 0.8401 -0.0004 25 1 3.8646 -0.3622 -0.0014 26 1 3.5276 -3.2971 -0.4060 27 1 5.6404 -1.5476 -1.3079 28 1 5.9117 -3.3130 -0.9746 29 1 5.9891 -0.9572 1.0448 30 1 8.1027 -2.3946 0.4516 31 1 7.2321 -3.7613 1.1880 32 1 7.2112 -1.6053 3.0124 33 1 7.6376 -1.0282 4.6007 34 1 9.4793 -2.5868 7.3507 35 1 10.2784 -1.0618 7.8152 36 1 11.8109 -2.5541 6.5031 37 1 11.4860 -1.0232 5.6479 38 1 4.9715 -3.8541 1.4993 39 1 4.3072 -2.3147 2.1996 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090905607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:08 Heat of formation + Delta-G solvation = -76.554261 kcal Electronic energy + Delta-G solvation = -21750.702013 eV Core-core repulsion = 18273.882067 eV Total energy + Delta-G solvation = -3476.819946 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.14706 -40.74531 -39.81552 -38.03158 -36.13538 -35.11651 -33.29204 -32.49025 -30.28737 -28.35911 -26.45026 -26.36549 -25.34973 -23.40217 -22.74575 -20.71961 -20.16963 -19.55877 -19.34383 -19.33217 -17.46578 -17.02001 -16.77843 -16.48364 -16.27672 -16.05125 -15.78269 -15.38705 -15.24400 -15.13385 -14.90053 -14.60535 -14.26629 -14.05777 -13.37269 -13.22677 -13.04722 -12.99840 -12.68544 -12.16978 -12.03845 -11.86358 -11.75219 -11.60418 -11.51289 -11.09119 -10.94753 -10.80769 -10.22875 -9.29811 -9.27404 -8.01192 -5.34878 0.19566 1.38846 1.43575 1.50577 1.56597 2.04805 2.20997 2.49904 2.72070 3.29325 3.37141 3.53393 3.65289 3.74623 3.83402 3.92829 3.96563 4.01842 4.24115 4.29304 4.38067 4.42103 4.61110 4.70237 4.74413 4.83495 4.96190 4.99653 5.09824 5.21249 5.33427 5.44816 5.56019 5.73795 5.82664 6.16574 6.24263 6.49052 7.07204 7.09703 7.86496 8.05272 9.20431 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.022226 B = 0.003399 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.459626 B = 8235.247349 C = 9053.089005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.066 4.066 3 Si 0.956 3.044 4 H -0.280 1.280 5 H -0.298 1.298 6 H -0.245 1.245 7 C -0.232 4.232 8 H 0.056 0.944 9 N -0.734 5.734 10 C 0.145 3.855 11 C -0.133 4.133 12 C -0.105 4.105 13 C 0.140 3.860 14 N -0.706 5.706 15 C 0.572 3.428 16 O -0.577 6.577 17 C -0.101 4.101 18 C 0.036 3.964 19 O -0.308 6.308 20 C 0.010 3.990 21 C 0.012 3.988 22 O -0.321 6.321 23 C -0.156 4.156 24 H 0.258 0.742 25 H 0.367 0.633 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.412 0.588 33 H 0.201 0.799 34 H 0.086 0.914 35 H 0.156 0.844 36 H 0.147 0.853 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.535 -1.744 13.624 27.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.257 4.257 3 Si 0.783 3.217 4 H -0.207 1.207 5 H -0.225 1.225 6 H -0.170 1.170 7 C -0.363 4.363 8 H 0.074 0.926 9 N -0.375 5.375 10 C 0.035 3.965 11 C -0.172 4.172 12 C -0.124 4.124 13 C 0.017 3.983 14 N -0.360 5.360 15 C 0.360 3.640 16 O -0.458 6.458 17 C -0.149 4.149 18 C -0.031 4.031 19 O -0.220 6.220 20 C -0.065 4.065 21 C -0.063 4.063 22 O -0.236 6.236 23 C -0.197 4.197 24 H 0.066 0.934 25 H 0.201 0.799 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.125 0.875 29 H 0.112 0.888 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.250 0.750 33 H 0.217 0.783 34 H 0.105 0.895 35 H 0.174 0.826 36 H 0.165 0.835 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 23.835 -2.375 13.220 27.359 hybrid contribution -0.309 1.193 0.198 1.248 sum 23.527 -1.182 13.418 27.110 Atomic orbital electron populations 1.69893 1.07283 1.26708 1.59732 1.25537 0.96116 1.01400 1.02691 0.85395 0.78821 0.79398 0.78060 1.20669 1.22467 1.16965 1.19066 0.82655 0.93418 1.41147 0.92638 1.42435 1.02208 1.03554 1.89333 1.21380 0.91598 0.87790 0.95710 1.23360 0.95296 1.03074 0.95475 1.22602 0.92082 1.00048 0.97679 1.21406 0.95296 0.99186 0.82417 1.45763 1.21896 1.48349 1.19984 1.17448 0.81324 0.80658 0.84545 1.90813 1.54907 1.36661 1.63414 1.20222 0.91379 1.07514 0.95816 1.23511 0.98120 0.96193 0.85270 1.86117 1.56536 1.52372 1.26929 1.24060 0.88054 0.99168 0.95180 1.24004 0.96787 0.99052 0.86487 1.86364 1.35281 1.52981 1.48933 1.23758 0.96535 1.00273 0.99084 0.93367 0.79892 0.92495 0.91248 0.87522 0.88768 0.91178 0.91174 0.74999 0.78253 0.89539 0.82638 0.83485 0.90066 0.89088 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.53 13.97 21.65 0.30 -62.23 16 2 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 3 Si 0.96 43.90 27.73 68.60 1.90 45.80 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.25 -9.82 6.52 99.48 0.65 -9.17 16 7 C -0.23 -12.87 10.45 84.03 0.88 -11.99 16 8 H 0.06 3.41 8.06 -2.91 -0.02 3.38 16 9 N -0.73 -32.24 5.11 -320.17 -1.64 -33.87 16 10 C 0.14 5.01 4.57 45.57 0.21 5.22 16 11 C -0.13 -3.42 7.39 31.12 0.23 -3.19 16 12 C -0.11 -2.46 3.62 -10.26 -0.04 -2.50 16 13 C 0.14 3.05 5.50 86.38 0.47 3.53 16 14 N -0.71 -14.59 5.49 -467.36 -2.56 -17.15 16 15 C 0.57 15.15 7.73 86.36 0.67 15.82 16 16 O -0.58 -20.44 16.92 10.09 0.17 -20.27 16 17 C -0.10 -2.26 6.61 23.42 0.15 -2.10 16 18 C 0.04 0.60 10.57 66.85 0.71 1.30 16 19 O -0.31 -4.68 10.47 -69.16 -0.72 -5.40 16 20 C 0.01 0.09 7.29 72.17 0.53 0.62 16 21 C 0.01 0.14 7.31 72.17 0.53 0.67 16 22 O -0.32 -7.51 10.28 -71.82 -0.74 -8.24 16 23 C -0.16 -4.37 7.44 31.18 0.23 -4.14 16 24 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 25 H 0.37 15.24 5.76 -92.71 -0.53 14.71 16 26 H 0.06 2.12 8.10 -2.39 -0.02 2.10 16 27 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.11 2.28 8.10 -2.39 -0.02 2.26 16 29 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 1.61 7.87 -2.39 -0.02 1.59 16 32 H 0.41 6.33 6.31 -92.70 -0.59 5.74 16 33 H 0.20 2.20 6.08 -2.91 -0.02 2.18 16 34 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.16 0.37 8.14 -2.38 -0.02 0.35 16 36 H 0.15 0.89 8.14 -2.38 -0.02 0.88 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.09 2.25 7.92 -2.39 -0.02 2.23 16 39 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -78.41 326.34 1.65 -76.76 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: -0.10 Total: 24.72 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 5.04 Total: -0.12 kcal Atomic # 7 Polarization: -109.36 SS G_CDS: -3.90 Total: -113.25 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -1.29 Total: -33.91 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.90 Total: 45.80 kcal Total: -78.41 1.65 -76.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090905607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.206 kcal (2) G-P(sol) polarization free energy of solvation -78.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds