Wall clock time and date at job start Tue Mar 31 2020 02:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53005 * 109.62871 * 2 1 4 4 O 1.43750 * 109.63559 * 120.39497 * 2 1 3 5 5 C 1.44784 * 104.81891 * 95.56308 * 4 2 1 6 6 C 1.54921 * 101.71758 * 36.10544 * 5 4 2 7 7 H 1.09000 * 110.69286 * 82.83714 * 6 5 4 8 8 C 1.50698 * 110.69494 * 206.04191 * 6 5 4 9 9 O 1.21281 * 120.00134 * 109.90412 * 8 6 5 10 10 N 1.34782 * 119.99886 * 289.89572 * 8 6 5 11 11 C 1.46502 * 120.00159 * 5.18894 * 10 8 6 12 12 C 1.50700 * 109.47256 * 89.99447 * 11 10 8 13 13 H 1.07999 * 120.00239 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99960 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99823 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99930 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47162 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47515 * 119.99535 * 16 14 12 19 19 H 1.48505 * 109.46702 * 239.99246 * 16 14 12 20 20 C 1.46500 * 119.99994 * 185.17915 * 10 8 6 21 21 C 1.53001 * 109.46470 * 94.95895 * 20 10 8 22 22 C 1.47207 * 109.46733 * 175.01092 * 21 20 10 23 23 N 9.16176 * 105.37265 * 213.19486 * 2 1 3 24 24 O 1.43372 * 109.63659 * 239.76009 * 2 1 3 25 25 H 1.09005 * 109.47364 * 301.06093 * 1 2 3 26 26 H 1.09004 * 109.47406 * 61.05804 * 1 2 3 27 27 H 1.08999 * 109.47450 * 181.05849 * 1 2 3 28 28 H 1.08998 * 109.47369 * 178.93770 * 3 2 1 29 29 H 1.08994 * 109.47285 * 298.94116 * 3 2 1 30 30 H 1.08996 * 109.46705 * 58.93973 * 3 2 1 31 31 H 1.08999 * 110.98102 * 154.21308 * 5 4 2 32 32 H 1.08998 * 110.97948 * 278.00089 * 5 4 2 33 33 H 1.09000 * 109.47115 * 209.99772 * 11 10 8 34 34 H 1.09000 * 109.46730 * 329.99727 * 11 10 8 35 35 H 0.97009 * 119.99672 * 180.02562 * 15 14 12 36 36 H 1.08990 * 109.47317 * 214.95561 * 20 10 8 37 37 H 1.09002 * 109.47094 * 334.96330 * 20 10 8 38 38 H 1.09003 * 109.47653 * 295.00445 * 21 20 10 39 39 H 1.08997 * 109.47570 * 55.00966 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 8 2.0129 -0.6850 1.1678 5 6 2.2652 -2.0400 0.7245 6 6 2.7884 -1.8078 -0.7151 7 1 3.8508 -1.5642 -0.7041 8 6 2.5262 -3.0150 -1.5782 9 8 1.6969 -2.9603 -2.4615 10 7 3.2135 -4.1553 -1.3688 11 6 4.1322 -4.2587 -0.2323 12 6 3.3884 -4.7831 0.9689 13 1 2.3364 -5.0157 0.8934 14 6 4.0505 -4.9649 2.1645 15 7 5.3314 -4.6812 2.2565 16 14 3.1287 -5.6157 3.6531 17 1 1.7090 -5.8559 3.2901 18 1 3.7477 -6.8890 4.1011 19 1 3.1965 -4.6189 4.7519 20 6 3.0417 -5.2915 -2.2774 21 6 4.1347 -5.2583 -3.3476 22 6 4.0353 -6.4628 -4.1879 23 7 3.9586 -7.3924 -4.8365 24 8 2.0117 -0.6801 -1.1666 25 1 -0.3634 0.5302 0.8803 26 1 -0.3634 0.4973 -0.8993 27 1 -0.3634 -1.0275 0.0190 28 1 3.1337 1.4383 0.0191 29 1 1.6976 1.9504 -0.8993 30 1 1.6665 1.9614 0.8803 31 1 3.0245 -2.5182 1.3433 32 1 1.3457 -2.6253 0.7158 33 1 4.9447 -4.9407 -0.4828 34 1 4.5411 -3.2742 -0.0050 35 1 5.7974 -4.8095 3.0976 36 1 3.1133 -6.2216 -1.7138 37 1 2.0637 -5.2303 -2.7549 38 1 4.0089 -4.3710 -3.9682 39 1 5.1128 -5.2300 -2.8673 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181742411.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:30 Heat of formation + Delta-G solvation = -100.757323 kcal Electronic energy + Delta-G solvation = -23157.029352 eV Core-core repulsion = 19679.159883 eV Total energy + Delta-G solvation = -3477.869470 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.59363 -38.90854 -36.70266 -35.43039 -34.53546 -33.25923 -32.65563 -31.28745 -28.41337 -27.45349 -27.29767 -24.56418 -23.32114 -22.66972 -20.87497 -18.85144 -17.55981 -17.40142 -16.78378 -16.31236 -16.00651 -15.45209 -14.90618 -14.70151 -14.64490 -14.18851 -13.90862 -13.53694 -13.07943 -13.02424 -12.69545 -12.59170 -12.40891 -12.31592 -12.18931 -12.04908 -11.94747 -11.77360 -11.65612 -11.60364 -11.12483 -11.05191 -10.87939 -10.73308 -10.33097 -10.03443 -9.86720 -9.52682 -9.08802 -8.71855 -8.06321 -6.38058 -4.46523 2.75566 2.91035 3.05671 3.12618 3.21070 3.23358 3.28142 3.90412 4.18354 4.21109 4.40501 4.91905 4.96289 4.99454 5.08752 5.11036 5.24891 5.27636 5.39864 5.60839 5.63491 5.68629 5.75688 5.81655 5.97983 6.00270 6.13851 6.18658 6.23169 6.30745 6.43889 6.52790 6.92201 7.22259 7.40283 7.56409 7.66933 7.80886 7.98670 8.55849 8.71645 9.22009 10.67802 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.010402 B = 0.007778 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.056209 B = 3599.065866 C = 5735.842703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.244 3.756 3 C -0.151 4.151 4 O -0.374 6.374 5 C 0.035 3.965 6 C 0.043 3.957 7 H 0.109 0.891 8 C 0.522 3.478 9 O -0.546 6.546 10 N -0.593 5.593 11 C 0.228 3.772 12 C -0.548 4.548 13 H 0.066 0.934 14 C 0.070 3.930 15 N -0.883 5.883 16 Si 0.892 3.108 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.280 1.280 20 C 0.125 3.875 21 C -0.046 4.046 22 C 0.221 3.779 23 N -0.449 5.449 24 O -0.358 6.358 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.152 0.848 32 H 0.074 0.926 33 H 0.044 0.956 34 H 0.041 0.959 35 H 0.268 0.732 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.595 7.558 -2.553 8.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.167 3.833 3 C -0.208 4.208 4 O -0.295 6.295 5 C -0.041 4.041 6 C -0.018 4.018 7 H 0.126 0.874 8 C 0.308 3.692 9 O -0.424 6.424 10 N -0.325 5.325 11 C 0.109 3.891 12 C -0.586 4.586 13 H 0.084 0.916 14 C -0.135 4.135 15 N -0.520 5.520 16 Si 0.719 3.281 17 H -0.195 1.195 18 H -0.207 1.207 19 H -0.205 1.205 20 C 0.000 4.000 21 C -0.087 4.087 22 C -0.097 4.097 23 N -0.126 5.126 24 O -0.279 6.279 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.169 0.831 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.126 0.874 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.994 6.365 -3.846 8.017 hybrid contribution -0.234 -0.222 1.240 1.281 sum -3.228 6.144 -2.605 7.413 Atomic orbital electron populations 1.22342 0.94303 1.03363 1.02620 1.23386 0.92876 0.91434 0.75574 1.22041 1.02478 0.93614 1.02704 1.89262 1.85758 1.22908 1.31576 1.24752 1.03023 0.83190 0.93112 1.23518 0.97652 0.86117 0.94502 0.87375 1.20062 0.81020 0.84025 0.84048 1.90647 1.33769 1.83847 1.34104 1.48111 1.44112 1.11600 1.28669 1.19649 0.88523 0.98850 0.82078 1.21508 0.96894 1.45619 0.94619 0.91610 1.24923 0.94832 0.94799 0.98924 1.69910 1.08373 1.46781 1.26916 0.86517 0.80196 0.78914 0.82477 1.19479 1.20722 1.20528 1.21137 0.97768 0.90748 0.90364 1.19773 1.03555 0.89891 0.95491 1.29075 0.92842 0.94358 0.93456 1.81186 1.09095 1.11633 1.10681 1.88921 1.69587 1.40280 1.29090 0.91005 0.91047 0.91771 0.91416 0.90824 0.90941 0.83093 0.90801 0.93791 0.94095 0.92211 0.89201 0.89541 0.87411 0.86786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 9.20 37.15 0.34 -1.99 16 2 C 0.24 3.83 1.47 -26.73 -0.04 3.79 16 3 C -0.15 -1.89 9.24 37.16 0.34 -1.55 16 4 O -0.37 -6.57 11.01 -59.04 -0.65 -7.22 16 5 C 0.04 0.64 5.87 38.17 0.22 0.86 16 6 C 0.04 0.76 3.13 -26.87 -0.08 0.67 16 7 H 0.11 1.79 7.26 -51.93 -0.38 1.42 16 8 C 0.52 9.78 7.08 -10.98 -0.08 9.70 16 9 O -0.55 -11.49 16.06 -13.46 -0.22 -11.71 16 10 N -0.59 -10.33 2.46 -175.06 -0.43 -10.76 16 11 C 0.23 4.45 4.72 -5.19 -0.02 4.43 16 12 C -0.55 -12.10 6.66 -34.44 -0.23 -12.33 16 13 H 0.07 1.50 7.81 -52.49 -0.41 1.09 16 14 C 0.07 1.63 5.40 -17.82 -0.10 1.53 16 15 N -0.88 -21.60 13.29 55.43 0.74 -20.86 16 16 Si 0.89 18.80 29.54 -169.99 -5.02 13.78 16 17 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 18 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 20 C 0.13 1.87 5.46 -4.04 -0.02 1.85 16 21 C -0.05 -0.56 6.02 -29.51 -0.18 -0.73 16 22 C 0.22 3.06 15.43 -20.76 -0.32 2.74 16 23 N -0.45 -7.31 18.54 42.16 0.78 -6.52 16 24 O -0.36 -6.43 10.15 -66.00 -0.67 -7.10 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.15 2.98 5.57 -51.93 -0.29 2.69 16 32 H 0.07 1.38 8.04 -51.93 -0.42 0.96 16 33 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 34 H 0.04 0.82 5.81 -51.93 -0.30 0.52 16 35 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 36 H 0.09 1.35 8.11 -51.93 -0.42 0.93 16 37 H 0.09 1.35 7.22 -51.93 -0.37 0.97 16 38 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 333.38 15.07 5.02 5.02 Total: -1.00 -27.42 333.38 -6.13 -33.56 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -5.53 Total: 2.84 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -0.16 Total: 8.98 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 1.09 Total: -38.15 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -1.54 Total: -26.03 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.78 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.42 -6.13 -33.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181742411.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.202 kcal (2) G-P(sol) polarization free energy of solvation -27.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds