Wall clock time and date at job start Tue Mar 31 2020 02:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53005 * 109.62871 * 2 1 4 4 O 1.43750 * 109.63559 * 120.39497 * 2 1 3 5 5 C 1.44784 * 104.81891 * 95.56308 * 4 2 1 6 6 C 1.54921 * 101.71758 * 36.10544 * 5 4 2 7 7 H 1.09000 * 110.69286 * 82.83714 * 6 5 4 8 8 C 1.50698 * 110.69494 * 206.04191 * 6 5 4 9 9 O 1.21281 * 120.00134 * 109.90412 * 8 6 5 10 10 N 1.34782 * 119.99886 * 289.89572 * 8 6 5 11 11 C 1.46502 * 120.00159 * 5.18894 * 10 8 6 12 12 C 1.50700 * 109.47256 * 89.99447 * 11 10 8 13 13 H 1.07999 * 120.00239 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99960 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99823 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99930 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47162 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47515 * 119.99535 * 16 14 12 19 19 H 1.48505 * 109.46702 * 239.99246 * 16 14 12 20 20 C 1.46500 * 119.99994 * 185.17915 * 10 8 6 21 21 C 1.53001 * 109.46470 * 94.95895 * 20 10 8 22 22 C 1.47207 * 109.46733 * 175.01092 * 21 20 10 23 23 N 9.16176 * 105.37265 * 213.19486 * 2 1 3 24 24 O 1.43372 * 109.63659 * 239.76009 * 2 1 3 25 25 H 1.09005 * 109.47364 * 301.06093 * 1 2 3 26 26 H 1.09004 * 109.47406 * 61.05804 * 1 2 3 27 27 H 1.08999 * 109.47450 * 181.05849 * 1 2 3 28 28 H 1.08998 * 109.47369 * 178.93770 * 3 2 1 29 29 H 1.08994 * 109.47285 * 298.94116 * 3 2 1 30 30 H 1.08996 * 109.46705 * 58.93973 * 3 2 1 31 31 H 1.08999 * 110.98102 * 154.21308 * 5 4 2 32 32 H 1.08998 * 110.97948 * 278.00089 * 5 4 2 33 33 H 1.09000 * 109.47115 * 209.99772 * 11 10 8 34 34 H 1.09000 * 109.46730 * 329.99727 * 11 10 8 35 35 H 0.97009 * 119.99672 * 180.02562 * 15 14 12 36 36 H 1.08990 * 109.47317 * 214.95561 * 20 10 8 37 37 H 1.09002 * 109.47094 * 334.96330 * 20 10 8 38 38 H 1.09003 * 109.47653 * 295.00445 * 21 20 10 39 39 H 1.08997 * 109.47570 * 55.00966 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 8 2.0129 -0.6850 1.1678 5 6 2.2652 -2.0400 0.7245 6 6 2.7884 -1.8078 -0.7151 7 1 3.8508 -1.5642 -0.7041 8 6 2.5262 -3.0150 -1.5782 9 8 1.6969 -2.9603 -2.4615 10 7 3.2135 -4.1553 -1.3688 11 6 4.1322 -4.2587 -0.2323 12 6 3.3884 -4.7831 0.9689 13 1 2.3364 -5.0157 0.8934 14 6 4.0505 -4.9649 2.1645 15 7 5.3314 -4.6812 2.2565 16 14 3.1287 -5.6157 3.6531 17 1 1.7090 -5.8559 3.2901 18 1 3.7477 -6.8890 4.1011 19 1 3.1965 -4.6189 4.7519 20 6 3.0417 -5.2915 -2.2774 21 6 4.1347 -5.2583 -3.3476 22 6 4.0353 -6.4628 -4.1879 23 7 3.9586 -7.3924 -4.8365 24 8 2.0117 -0.6801 -1.1666 25 1 -0.3634 0.5302 0.8803 26 1 -0.3634 0.4973 -0.8993 27 1 -0.3634 -1.0275 0.0190 28 1 3.1337 1.4383 0.0191 29 1 1.6976 1.9504 -0.8993 30 1 1.6665 1.9614 0.8803 31 1 3.0245 -2.5182 1.3433 32 1 1.3457 -2.6253 0.7158 33 1 4.9447 -4.9407 -0.4828 34 1 4.5411 -3.2742 -0.0050 35 1 5.7974 -4.8095 3.0976 36 1 3.1133 -6.2216 -1.7138 37 1 2.0637 -5.2303 -2.7549 38 1 4.0089 -4.3710 -3.9682 39 1 5.1128 -5.2300 -2.8673 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181742411.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:29 Heat of formation + Delta-G solvation = -115.858518 kcal Electronic energy + Delta-G solvation = -23157.684189 eV Core-core repulsion = 19679.159883 eV Total energy + Delta-G solvation = -3478.524307 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.97025 -40.32846 -37.94091 -36.90919 -35.92156 -34.80025 -34.01906 -32.57355 -29.74446 -29.11609 -28.33699 -25.90812 -24.98277 -24.04541 -22.09265 -20.30249 -18.91274 -18.72284 -18.32025 -17.81752 -17.39559 -16.81227 -16.39025 -16.18863 -15.87869 -15.49935 -15.21215 -14.85297 -14.40952 -14.33766 -14.27168 -14.00113 -13.72656 -13.56990 -13.43831 -13.28317 -13.14461 -13.00182 -12.94831 -12.75154 -12.69576 -12.64713 -12.34421 -12.14592 -11.80217 -11.65744 -11.35151 -10.91121 -10.60419 -10.38980 -9.58248 -8.17430 -6.27735 1.43155 1.45350 1.51017 1.55763 1.67388 1.78988 1.91863 2.43426 2.60888 2.99318 3.16146 3.19359 3.51049 3.63263 3.85156 3.96187 4.04210 4.10939 4.14864 4.37556 4.55578 4.61546 4.71111 4.74966 4.79332 4.82932 4.88146 4.94603 5.03103 5.03923 5.16416 5.27582 5.31684 5.67241 5.81396 6.08299 6.09369 6.45279 6.55362 6.83035 7.19049 7.42968 8.87585 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.010402 B = 0.007778 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.056209 B = 3599.065866 C = 5735.842703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.229 3.771 3 C -0.147 4.147 4 O -0.383 6.383 5 C 0.044 3.956 6 C 0.044 3.956 7 H 0.121 0.879 8 C 0.522 3.478 9 O -0.570 6.570 10 N -0.586 5.586 11 C 0.240 3.760 12 C -0.541 4.541 13 H 0.056 0.944 14 C 0.037 3.963 15 N -0.908 5.908 16 Si 0.934 3.066 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.281 1.281 20 C 0.121 3.879 21 C -0.031 4.031 22 C 0.245 3.755 23 N -0.490 5.490 24 O -0.372 6.372 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.045 0.955 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.135 0.865 32 H 0.063 0.937 33 H 0.045 0.955 34 H 0.040 0.960 35 H 0.267 0.733 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.123 0.877 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.674 8.564 -2.635 9.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.153 3.847 3 C -0.204 4.204 4 O -0.304 6.304 5 C -0.032 4.032 6 C -0.016 4.016 7 H 0.138 0.862 8 C 0.309 3.691 9 O -0.450 6.450 10 N -0.318 5.318 11 C 0.119 3.881 12 C -0.580 4.580 13 H 0.074 0.926 14 C -0.166 4.166 15 N -0.546 5.546 16 Si 0.761 3.239 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.207 1.207 20 C -0.003 4.003 21 C -0.072 4.072 22 C -0.072 4.072 23 N -0.168 5.168 24 O -0.293 6.293 25 H 0.111 0.889 26 H 0.103 0.897 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.153 0.847 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.141 0.859 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.077 7.363 -3.930 8.895 hybrid contribution -0.265 -0.495 1.271 1.389 sum -3.342 6.867 -2.660 8.087 Atomic orbital electron populations 1.22365 0.93046 1.02714 1.04324 1.23892 0.94020 0.92499 0.74278 1.22064 1.02355 0.91564 1.04411 1.89244 1.86038 1.22449 1.32683 1.24461 1.01976 0.83616 0.93181 1.23510 0.98303 0.85987 0.93805 0.86210 1.20223 0.80607 0.84461 0.83770 1.90633 1.34808 1.84298 1.35271 1.48030 1.43367 1.11960 1.28400 1.19414 0.88343 0.98490 0.81818 1.21643 0.96444 1.44481 0.95420 0.92598 1.25360 0.95258 0.95341 1.00591 1.69959 1.09173 1.48232 1.27278 0.85859 0.79207 0.78183 0.80610 1.19678 1.21002 1.20723 1.21240 0.98633 0.89793 0.90672 1.19714 1.03282 0.89619 0.94601 1.29213 0.91526 0.93886 0.92591 1.81217 1.10491 1.12944 1.12145 1.88904 1.69813 1.40276 1.30326 0.88944 0.89692 0.93606 0.91684 0.89167 0.89163 0.84711 0.91837 0.93737 0.94225 0.92322 0.89210 0.90125 0.85880 0.84889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.34 9.20 71.98 0.66 -3.68 16 2 C 0.23 6.84 1.47 30.59 0.04 6.88 16 3 C -0.15 -3.32 9.24 71.98 0.66 -2.66 16 4 O -0.38 -13.11 11.01 -126.22 -1.39 -14.49 16 5 C 0.04 1.59 5.87 72.64 0.43 2.01 16 6 C 0.04 1.55 3.13 30.50 0.10 1.64 16 7 H 0.12 3.84 7.26 -2.39 -0.02 3.83 16 8 C 0.52 19.12 7.08 87.66 0.62 19.74 16 9 O -0.57 -23.59 16.06 15.15 0.24 -23.34 16 10 N -0.59 -19.80 2.46 -826.15 -2.03 -21.83 16 11 C 0.24 9.09 4.72 85.63 0.40 9.50 16 12 C -0.54 -23.59 6.66 25.60 0.17 -23.42 16 13 H 0.06 2.53 7.81 -2.91 -0.02 2.51 16 14 C 0.04 1.68 5.40 84.65 0.46 2.14 16 15 N -0.91 -43.95 13.29 21.45 0.28 -43.67 16 16 Si 0.93 38.25 29.54 68.60 2.03 40.28 16 17 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 18 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 19 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 20 C 0.12 3.46 5.46 86.38 0.47 3.94 16 21 C -0.03 -0.69 6.02 28.79 0.17 -0.52 16 22 C 0.25 6.41 15.43 89.44 1.38 7.79 16 23 N -0.49 -15.51 18.54 20.01 0.37 -15.14 16 24 O -0.37 -12.93 10.15 -119.56 -1.21 -14.14 16 25 H 0.09 1.98 8.14 -2.38 -0.02 1.97 16 26 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 27 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.14 5.33 5.57 -2.39 -0.01 5.31 16 32 H 0.06 2.39 8.04 -2.39 -0.02 2.37 16 33 H 0.04 1.72 8.07 -2.39 -0.02 1.70 16 34 H 0.04 1.55 5.81 -2.39 -0.01 1.53 16 35 H 0.27 12.55 8.31 -92.70 -0.77 11.78 16 36 H 0.09 2.58 8.11 -2.39 -0.02 2.56 16 37 H 0.08 2.44 7.22 -2.39 -0.02 2.42 16 38 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -57.01 333.38 4.92 -52.09 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 1.05 Total: 16.87 kcal Atomic # 6 Polarization: 17.80 SS G_CDS: 5.57 Total: 23.38 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -1.37 Total: -80.64 kcal Atomic # 8 Polarization: -49.62 SS G_CDS: -2.36 Total: -51.98 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -57.01 4.92 -52.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181742411.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.768 kcal (2) G-P(sol) polarization free energy of solvation -57.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds