Wall clock time and date at job start Tue Mar 31 2020 03:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42905 * 109.46974 * 299.55164 * 3 2 1 5 5 C 1.42899 * 113.99778 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.47379 * 30.00380 * 5 4 3 7 7 C 1.53003 * 109.47347 * 270.00259 * 5 4 3 8 8 C 1.50704 * 109.46915 * 150.00141 * 5 4 3 9 9 O 1.21275 * 119.99865 * 5.00319 * 8 5 4 10 10 N 1.34779 * 119.99783 * 184.99883 * 8 5 4 11 11 C 1.46504 * 119.99887 * 179.97438 * 10 8 5 12 12 H 1.09004 * 110.87861 * 31.12114 * 11 10 8 13 13 C 1.54910 * 111.00501 * 267.20040 * 11 10 8 14 14 N 1.47419 * 104.82871 * 204.91740 * 13 11 10 15 15 C 1.36936 * 125.64627 * 204.08162 * 14 13 11 16 16 H 1.08003 * 119.99857 * 0.03048 * 15 14 13 17 17 C 1.38817 * 120.00310 * 180.02562 * 15 14 13 18 18 N 1.31622 * 119.99616 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00061 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46741 * 90.00693 * 19 17 15 21 21 H 1.48503 * 109.46982 * 210.00024 * 19 17 15 22 22 H 1.48494 * 109.47415 * 330.00349 * 19 17 15 23 23 C 1.47024 * 108.70779 * 24.12361 * 14 13 11 24 24 C 1.54319 * 107.26952 * 358.94548 * 23 14 13 25 25 H 1.08995 * 110.72449 * 96.16452 * 24 23 14 26 26 O 1.42901 * 110.71894 * 219.44154 * 24 23 14 27 27 H 4.38445 * 5.44316 * 179.97438 * 4 1 2 28 28 H 1.09004 * 109.46939 * 179.55450 * 3 2 1 29 29 H 1.09000 * 109.47409 * 59.55329 * 3 2 1 30 30 H 1.09001 * 109.47258 * 180.02562 * 7 5 4 31 31 H 1.09001 * 109.46539 * 300.00205 * 7 5 4 32 32 H 1.08993 * 109.46966 * 60.00224 * 7 5 4 33 33 H 0.97005 * 119.99956 * 0.02562 * 10 8 5 34 34 H 1.09003 * 110.36151 * 323.75272 * 13 11 10 35 35 H 1.08993 * 110.36574 * 86.07254 * 13 11 10 36 36 H 0.96997 * 119.99526 * 179.97438 * 18 17 15 37 37 H 1.08994 * 109.88238 * 239.52393 * 23 14 13 38 38 H 1.08999 * 109.87994 * 118.36068 * 23 14 13 39 39 H 0.96692 * 113.99961 * 293.51929 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1226 -0.6636 1.1721 5 6 4.5472 -0.7181 1.2705 6 1 4.9791 0.1528 0.7773 7 6 5.0568 -1.9923 0.5939 8 6 4.9505 -0.7246 2.7226 9 8 4.1019 -0.7780 3.5873 10 7 6.2542 -0.6711 3.0601 11 6 6.6463 -0.6769 4.4717 12 1 5.9349 -1.2461 5.0701 13 6 6.7974 0.7671 5.0118 14 7 7.7348 0.6504 6.1436 15 6 7.8247 1.5191 7.1983 16 1 7.1720 2.3782 7.2474 17 6 8.7547 1.2957 8.2043 18 7 9.5504 0.2490 8.1443 19 14 8.8777 2.4812 9.6427 20 1 7.9664 2.0384 10.7284 21 1 10.2742 2.5041 10.1472 22 1 8.4904 3.8434 9.1959 23 6 8.5579 -0.5527 5.9520 24 6 8.0863 -1.2274 4.6467 25 1 8.7172 -0.9300 3.8091 26 8 8.0702 -2.6491 4.7896 27 1 -1.0498 0.0001 0.0002 28 1 3.0089 1.0285 -0.0080 29 1 3.0096 -0.5199 -0.8859 30 1 6.1434 -2.0341 0.6694 31 1 4.6249 -2.8631 1.0871 32 1 4.7652 -1.9876 -0.4562 33 1 6.9329 -0.6281 2.3683 34 1 7.2113 1.4186 4.2421 35 1 5.8348 1.1468 5.3540 36 1 10.2005 0.0931 8.8471 37 1 8.4203 -1.2336 6.7919 38 1 9.6081 -0.2736 5.8666 39 1 8.9460 -3.0430 4.9020 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192844098.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:00 Heat of formation + Delta-G solvation = -39.078540 kcal Electronic energy + Delta-G solvation = -22091.785243 eV Core-core repulsion = 18616.590366 eV Total energy + Delta-G solvation = -3475.194877 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.02412 -38.43701 -37.42266 -35.07688 -34.12076 -33.65523 -32.02904 -31.10305 -28.35697 -27.35952 -27.05029 -24.81363 -23.76114 -20.74282 -20.47670 -20.13585 -18.88931 -17.47392 -17.19505 -16.83261 -16.60389 -15.95042 -15.54253 -15.01786 -14.64790 -14.48813 -14.04280 -13.78898 -13.30705 -13.13808 -12.82790 -12.69292 -12.47315 -12.35607 -12.06744 -11.66635 -11.49267 -11.25907 -10.91083 -10.89363 -10.81881 -10.78692 -10.16697 -10.00193 -9.92523 -9.84798 -9.57133 -9.25856 -8.84101 -8.63277 -6.92236 -5.76884 -3.11424 2.15845 2.56148 2.74890 3.09889 3.39544 3.44604 3.46069 3.80564 4.29684 4.43333 4.57476 4.61648 4.71757 4.81022 4.88471 5.09647 5.18119 5.33809 5.43051 5.43531 5.56829 5.64727 5.65743 5.80540 5.87423 6.06799 6.11872 6.49631 6.60438 6.72905 6.90813 7.31607 7.32393 7.45946 7.65637 7.73494 8.10898 8.16840 8.39573 9.14590 9.74587 10.37437 11.34935 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.025359 B = 0.003534 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.898936 B = 7920.527715 C = 8767.686599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.192 4.192 3 C 0.170 3.830 4 O -0.350 6.350 5 C 0.072 3.928 6 H 0.090 0.910 7 C -0.170 4.170 8 C 0.513 3.487 9 O -0.515 6.515 10 N -0.713 5.713 11 C 0.139 3.861 12 H 0.106 0.894 13 C 0.130 3.870 14 N -0.600 5.600 15 C -0.229 4.229 16 H 0.081 0.919 17 C -0.008 4.008 18 N -0.924 5.924 19 Si 0.916 3.084 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.153 3.847 24 C 0.069 3.931 25 H 0.058 0.942 26 O -0.563 6.563 27 H 0.222 0.778 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.396 0.604 34 H 0.024 0.976 35 H 0.050 0.950 36 H 0.253 0.747 37 H 0.061 0.939 38 H 0.049 0.951 39 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.491 -2.972 -19.397 20.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.192 4.192 3 C 0.094 3.906 4 O -0.269 6.269 5 C 0.011 3.989 6 H 0.107 0.893 7 C -0.228 4.228 8 C 0.297 3.703 9 O -0.389 6.389 10 N -0.365 5.365 11 C 0.034 3.966 12 H 0.124 0.876 13 C 0.002 3.998 14 N -0.328 5.328 15 C -0.357 4.357 16 H 0.099 0.901 17 C -0.204 4.204 18 N -0.572 5.572 19 Si 0.746 3.254 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.028 3.972 24 C 0.009 3.991 25 H 0.075 0.925 26 O -0.367 6.367 27 H 0.239 0.761 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.230 0.770 34 H 0.042 0.958 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -7.756 -2.974 -18.480 20.261 hybrid contribution 1.098 0.651 0.294 1.310 sum -6.657 -2.323 -18.187 19.506 Atomic orbital electron populations 1.24964 0.95891 0.99918 0.98230 1.22439 0.93826 1.01088 1.01821 1.19183 0.85077 0.97438 0.88913 1.88142 1.19081 1.77773 1.41870 1.21939 0.82769 0.99837 0.94390 0.89268 1.22240 1.01932 0.97605 1.01035 1.20219 0.82902 0.76970 0.90205 1.90751 1.49999 1.47359 1.50783 1.45827 1.06679 1.75259 1.08737 1.22282 0.95718 0.98155 0.80470 0.87616 1.21849 0.94590 0.92581 0.90753 1.44246 1.39080 1.27190 1.22270 1.19097 1.15961 1.03102 0.97515 0.90125 1.24820 0.98411 0.98281 0.98871 1.69923 1.24311 1.28514 1.34428 0.86060 0.76937 0.80084 0.82333 1.21459 1.21643 1.20612 1.21827 0.94905 0.88658 0.91834 1.23457 0.95335 0.80994 0.99357 0.92466 1.86474 1.34158 1.19969 1.96144 0.76129 0.90575 0.90660 0.90605 0.90856 0.91277 0.76971 0.95845 0.93151 0.93646 0.92081 0.93285 0.77693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 19.25 29.55 0.57 -1.10 16 2 C -0.19 -2.15 13.73 -37.12 -0.51 -2.66 16 3 C 0.17 1.64 6.22 34.37 0.21 1.85 16 4 O -0.35 -4.73 9.48 -55.09 -0.52 -5.25 16 5 C 0.07 0.80 3.13 -27.88 -0.09 0.71 16 6 H 0.09 0.69 7.79 -51.93 -0.40 0.29 16 7 C -0.17 -1.45 9.48 37.16 0.35 -1.10 16 8 C 0.51 8.06 7.18 -10.98 -0.08 7.98 16 9 O -0.52 -10.84 16.15 -14.30 -0.23 -11.07 16 10 N -0.71 -10.31 5.16 -51.72 -0.27 -10.58 16 11 C 0.14 2.62 3.15 -65.78 -0.21 2.41 16 12 H 0.11 2.34 7.54 -51.93 -0.39 1.95 16 13 C 0.13 2.77 6.93 -2.53 -0.02 2.75 16 14 N -0.60 -15.37 3.39 -170.08 -0.58 -15.95 16 15 C -0.23 -6.41 10.28 -15.06 -0.15 -6.57 16 16 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 17 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 18 N -0.92 -26.78 10.31 55.49 0.57 -26.21 16 19 Si 0.92 22.14 29.55 -169.99 -5.02 17.11 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.15 3.61 5.15 -3.07 -0.02 3.60 16 24 C 0.07 1.24 3.98 -24.90 -0.10 1.14 16 25 H 0.06 0.89 8.00 -51.93 -0.42 0.47 16 26 O -0.56 -9.60 13.39 -35.23 -0.47 -10.07 16 27 H 0.22 1.26 7.80 -54.10 -0.42 0.84 16 28 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 29 H 0.08 0.51 7.87 -51.93 -0.41 0.10 16 30 H 0.08 0.52 7.92 -51.93 -0.41 0.11 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.44 7.87 -51.93 -0.41 0.03 16 33 H 0.40 4.25 8.35 -40.82 -0.34 3.91 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.06 1.63 7.30 -51.93 -0.38 1.26 16 38 H 0.05 1.24 7.50 -51.93 -0.39 0.85 16 39 H 0.38 4.82 9.12 45.56 0.42 5.23 16 LS Contribution 338.43 15.07 5.10 5.10 Total: -1.00 -36.38 338.43 -6.34 -42.72 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -4.79 Total: 5.48 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -0.13 Total: 8.71 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -0.27 Total: -52.74 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -1.23 Total: -26.39 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -36.38 -6.34 -42.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192844098.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.645 kcal (2) G-P(sol) polarization free energy of solvation -36.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds