Wall clock time and date at job start Tue Mar 31 2020 03:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42902 * 109.47072 * 339.35872 * 3 2 1 5 5 C 1.42895 * 114.00009 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.46965 * 330.00396 * 5 4 3 7 7 C 1.53003 * 109.46813 * 90.00117 * 5 4 3 8 8 C 1.50698 * 109.47137 * 209.99989 * 5 4 3 9 9 O 1.21278 * 120.00090 * 0.02562 * 8 5 4 10 10 N 1.34781 * 119.99725 * 180.02562 * 8 5 4 11 11 C 1.46502 * 119.99894 * 180.02562 * 10 8 5 12 12 H 1.08998 * 110.63870 * 31.86009 * 11 10 8 13 13 C 1.54326 * 111.00089 * 268.78251 * 11 10 8 14 14 N 1.47029 * 107.26545 * 219.60152 * 13 11 10 15 15 C 1.36936 * 125.64927 * 178.85396 * 14 13 11 16 16 H 1.08000 * 119.99664 * 347.78467 * 15 14 13 17 17 C 1.38814 * 119.99940 * 167.78993 * 15 14 13 18 18 N 1.31611 * 119.99770 * 325.97326 * 17 15 14 19 19 Si 1.86803 * 119.99856 * 145.97398 * 17 15 14 20 20 H 1.48498 * 109.47176 * 59.99787 * 19 17 15 21 21 H 1.48504 * 109.47098 * 299.99679 * 19 17 15 22 22 H 1.48503 * 109.46709 * 179.97438 * 19 17 15 23 23 C 1.47428 * 108.69950 * 358.58471 * 14 13 11 24 24 C 1.54911 * 104.83117 * 24.35676 * 23 14 13 25 25 H 1.08994 * 111.00096 * 81.06545 * 24 23 14 26 26 O 1.42905 * 110.99983 * 204.87839 * 24 23 14 27 27 H 4.38449 * 5.44385 * 179.97438 * 4 1 2 28 28 H 1.08994 * 109.46869 * 219.35935 * 3 2 1 29 29 H 1.09000 * 109.46617 * 99.35549 * 3 2 1 30 30 H 1.09005 * 109.46996 * 180.02562 * 7 5 4 31 31 H 1.08996 * 109.47124 * 299.99811 * 7 5 4 32 32 H 1.08992 * 109.47361 * 60.00335 * 7 5 4 33 33 H 0.97000 * 120.00291 * 0.02562 * 10 8 5 34 34 H 1.09001 * 109.99550 * 100.12586 * 13 11 10 35 35 H 1.09001 * 109.78084 * 338.95674 * 13 11 10 36 36 H 0.97001 * 120.00692 * 354.24878 * 18 17 15 37 37 H 1.09001 * 110.36401 * 143.19907 * 23 14 13 38 38 H 1.09004 * 110.36635 * 265.51575 * 23 14 13 39 39 H 0.96702 * 113.99621 * 298.54529 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -1.2599 0.4749 5 6 4.5475 -1.3651 0.5142 6 1 4.9794 -0.7428 -0.2695 7 6 5.0562 -0.8939 1.8781 8 6 4.9514 -2.8004 0.2958 9 8 4.1029 -3.6496 0.1231 10 7 6.2556 -3.1404 0.2925 11 6 6.6484 -4.5356 0.0797 12 1 5.9388 -5.0386 -0.5773 13 6 6.7691 -5.2872 1.4221 14 7 7.9435 -6.1666 1.3259 15 6 8.4087 -6.9881 2.3177 16 1 8.0315 -6.8863 3.3245 17 6 9.3653 -7.9517 2.0290 18 7 9.3618 -8.5523 0.8579 19 14 10.6575 -8.3960 3.3027 20 1 9.9906 -8.9079 4.5268 21 1 11.4545 -7.1895 3.6410 22 1 11.5544 -9.4442 2.7530 23 6 8.5333 -6.0222 -0.0175 24 6 8.0858 -4.6192 -0.4983 25 1 8.7220 -3.8407 -0.0774 26 8 8.0698 -4.5479 -1.9255 27 1 -1.0498 -0.0003 0.0003 28 1 3.0089 0.7954 0.6517 29 1 3.0092 0.1679 -1.0140 30 1 6.1429 -0.9737 1.9079 31 1 4.7640 0.1442 2.0360 32 1 4.6243 -1.5162 2.6618 33 1 6.9342 -2.4613 0.4310 34 1 5.8733 -5.8829 1.5977 35 1 6.9065 -4.5727 2.2338 36 1 8.6433 -8.3836 0.2284 37 1 9.6206 -6.0754 0.0379 38 1 8.1485 -6.7927 -0.6856 39 1 8.9332 -4.6928 -2.3362 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192844099.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:01 Heat of formation + Delta-G solvation = -71.986862 kcal Electronic energy + Delta-G solvation = -22130.906313 eV Core-core repulsion = 18654.284425 eV Total energy + Delta-G solvation = -3476.621889 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -41.37616 -39.90937 -38.72021 -36.88180 -35.79548 -34.50242 -33.83142 -32.24291 -30.05557 -28.96723 -28.08721 -26.34478 -25.02254 -22.60007 -22.13019 -21.47251 -19.76281 -19.62090 -18.57170 -18.34088 -17.91207 -17.13880 -16.74868 -16.31371 -16.11210 -15.78354 -15.57954 -15.36181 -15.14903 -14.59412 -14.34413 -14.02190 -13.98509 -13.63538 -13.34586 -13.24119 -13.19512 -12.66581 -12.49635 -12.46335 -11.89708 -11.83710 -11.74813 -11.72951 -11.58366 -11.22495 -10.93290 -10.56934 -10.48363 -10.26415 -9.15779 -8.45186 -5.36797 1.29186 1.47979 1.59189 1.65465 1.80071 1.86187 1.95006 2.59200 2.89079 2.99928 3.09882 3.43482 3.45977 3.63573 3.73005 3.87978 3.90756 3.95120 4.04109 4.23976 4.24909 4.38921 4.46565 4.69773 4.71187 4.77804 4.82491 4.87618 4.99928 5.02087 5.21991 5.31530 5.58964 5.97357 6.20739 6.46096 6.58083 6.72582 6.77909 7.14547 7.61483 8.15741 8.87849 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.030444 B = 0.003385 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.494361 B = 8269.056541 C = 8616.642578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.238 4.238 3 C 0.163 3.837 4 O -0.391 6.391 5 C 0.080 3.920 6 H 0.134 0.866 7 C -0.168 4.168 8 C 0.507 3.493 9 O -0.578 6.578 10 N -0.694 5.694 11 C 0.156 3.844 12 H 0.072 0.928 13 C 0.130 3.870 14 N -0.616 5.616 15 C -0.360 4.360 16 H 0.063 0.937 17 C -0.071 4.071 18 N -0.932 5.932 19 Si 1.116 2.884 20 H -0.278 1.278 21 H -0.273 1.273 22 H -0.291 1.291 23 C 0.121 3.879 24 C 0.107 3.893 25 H 0.104 0.896 26 O -0.565 6.565 27 H 0.251 0.749 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.048 0.952 33 H 0.421 0.579 34 H 0.002 0.998 35 H 0.049 0.951 36 H 0.252 0.748 37 H 0.045 0.955 38 H 0.005 0.995 39 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.560 23.201 -2.398 23.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.238 4.238 3 C 0.089 3.911 4 O -0.310 6.310 5 C 0.020 3.980 6 H 0.151 0.849 7 C -0.225 4.225 8 C 0.294 3.706 9 O -0.456 6.456 10 N -0.348 5.348 11 C 0.049 3.951 12 H 0.090 0.910 13 C 0.004 3.996 14 N -0.345 5.345 15 C -0.488 4.488 16 H 0.081 0.919 17 C -0.268 4.268 18 N -0.573 5.573 19 Si 0.939 3.061 20 H -0.204 1.204 21 H -0.199 1.199 22 H -0.217 1.217 23 C -0.005 4.005 24 C 0.046 3.954 25 H 0.122 0.878 26 O -0.373 6.373 27 H 0.268 0.732 28 H 0.124 0.876 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.067 0.933 33 H 0.259 0.741 34 H 0.020 0.980 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.023 0.977 39 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -5.548 21.630 -2.019 22.421 hybrid contribution -1.028 0.309 -0.443 1.161 sum -6.575 21.939 -2.462 23.035 Atomic orbital electron populations 1.25871 0.96971 0.96447 0.99214 1.23216 0.95205 1.03319 1.02108 1.19508 0.84437 0.86127 1.01056 1.88083 1.20294 1.35928 1.86696 1.22034 0.82413 0.91541 1.02052 0.84869 1.22295 1.03007 1.03423 0.93806 1.21306 0.82162 0.91832 0.75272 1.90725 1.51675 1.53382 1.49799 1.45579 1.07412 1.08770 1.73013 1.21472 0.95619 0.82872 0.95095 0.90976 1.21709 0.89048 0.92812 0.96039 1.44684 1.29080 1.48370 1.12339 1.19981 1.24665 1.15253 0.88883 0.91912 1.27201 1.03373 0.93430 1.02748 1.70930 1.36480 1.38631 1.11229 0.82875 0.74255 0.76196 0.72786 1.20383 1.19926 1.21700 1.22112 0.97226 0.94740 0.86428 1.23018 0.94692 0.96192 0.81503 0.87820 1.86428 1.38308 1.94673 1.17885 0.73243 0.87571 0.88834 0.88463 0.88243 0.93294 0.74061 0.98035 0.93289 0.93788 0.93704 0.97706 0.74939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.00 19.25 74.32 1.43 -1.57 16 2 C -0.24 -5.04 13.73 31.13 0.43 -4.61 16 3 C 0.16 2.77 6.22 70.18 0.44 3.21 16 4 O -0.39 -9.98 9.48 -129.94 -1.23 -11.22 16 5 C 0.08 1.57 3.14 29.85 0.09 1.66 16 6 H 0.13 1.45 7.79 -2.39 -0.02 1.43 16 7 C -0.17 -2.35 9.42 71.98 0.68 -1.67 16 8 C 0.51 15.39 7.23 87.66 0.63 16.02 16 9 O -0.58 -24.78 16.14 16.01 0.26 -24.52 16 10 N -0.69 -18.72 5.01 -436.92 -2.19 -20.91 16 11 C 0.16 5.73 3.04 46.18 0.14 5.87 16 12 H 0.07 3.14 7.55 -2.39 -0.02 3.13 16 13 C 0.13 5.79 7.01 86.73 0.61 6.40 16 14 N -0.62 -31.78 3.33 -691.94 -2.30 -34.08 16 15 C -0.36 -20.63 9.97 84.03 0.84 -19.79 16 16 H 0.06 3.60 8.02 -2.91 -0.02 3.58 16 17 C -0.07 -4.04 4.95 84.86 0.42 -3.62 16 18 N -0.93 -57.07 12.87 21.65 0.28 -56.79 16 19 Si 1.12 50.17 30.03 68.60 2.06 52.23 16 20 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 22 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 23 C 0.12 5.55 5.07 86.86 0.44 5.99 16 24 C 0.11 3.54 4.06 31.98 0.13 3.67 16 25 H 0.10 2.80 8.01 -2.39 -0.02 2.78 16 26 O -0.57 -16.79 13.47 -148.98 -2.01 -18.80 16 27 H 0.25 2.32 7.80 -4.43 -0.03 2.29 16 28 H 0.11 1.07 7.87 -2.39 -0.02 1.05 16 29 H 0.09 1.18 8.08 -2.39 -0.02 1.16 16 30 H 0.10 0.94 7.56 -2.38 -0.02 0.92 16 31 H 0.10 0.84 7.87 -2.39 -0.02 0.83 16 32 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.42 7.53 7.98 -92.71 -0.74 6.79 16 34 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.05 2.02 8.03 -2.39 -0.02 2.00 16 36 H 0.25 15.95 6.45 -92.71 -0.60 15.35 16 37 H 0.04 2.15 7.82 -2.39 -0.02 2.13 16 38 H 0.01 0.27 7.03 -2.39 -0.02 0.25 16 39 H 0.40 8.33 9.11 -74.06 -0.67 7.65 16 Total: -1.00 -85.43 338.01 0.97 -84.47 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -0.17 Total: 18.06 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 6.28 Total: 11.56 kcal Atomic # 7 Polarization: -107.57 SS G_CDS: -4.21 Total: -111.78 kcal Atomic # 8 Polarization: -51.55 SS G_CDS: -2.98 Total: -54.54 kcal Atomic # 14 Polarization: 50.17 SS G_CDS: 2.06 Total: 52.23 kcal Total: -85.43 0.97 -84.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192844099.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.478 kcal (2) G-P(sol) polarization free energy of solvation -85.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds