Wall clock time and date at job start Tue Mar 31 2020 03:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 O 1.42907 * 109.47304 * 109.69682 * 3 2 1 5 5 C 1.42894 * 114.00079 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.46903 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.46843 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00290 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99950 * 179.97438 * 7 6 5 10 10 C 1.46494 * 120.00121 * 179.97438 * 9 7 6 11 11 H 1.09003 * 110.64091 * 34.30353 * 10 9 7 12 12 C 1.54331 * 110.72422 * 271.16091 * 10 9 7 13 13 N 1.47017 * 107.27173 * 219.26746 * 12 10 9 14 14 C 1.36932 * 125.64895 * 178.90830 * 13 12 10 15 15 H 1.08003 * 120.00075 * 341.51282 * 14 13 12 16 16 C 1.38811 * 120.00333 * 161.51938 * 14 13 12 17 17 N 1.31626 * 119.99981 * 157.63017 * 16 14 13 18 18 Si 1.86803 * 120.00108 * 337.63363 * 16 14 13 19 19 H 1.48496 * 109.47350 * 84.53375 * 18 16 14 20 20 H 1.48498 * 109.47118 * 204.53604 * 18 16 14 21 21 H 1.48497 * 109.46713 * 324.53514 * 18 16 14 22 22 C 1.47428 * 108.70674 * 358.93941 * 13 12 10 23 23 C 1.54909 * 104.83151 * 24.12822 * 22 13 12 24 24 H 1.09007 * 111.00471 * 81.06358 * 23 22 13 25 25 O 1.42895 * 111.00828 * 204.91865 * 23 22 13 26 26 H 4.38452 * 5.44477 * 180.02562 * 4 1 2 27 27 H 1.08997 * 109.47534 * 349.69605 * 3 2 1 28 28 H 1.09002 * 109.47265 * 229.69382 * 3 2 1 29 29 H 1.08996 * 109.47492 * 60.00080 * 5 4 3 30 30 H 1.09000 * 109.47251 * 299.99561 * 5 4 3 31 31 H 1.08996 * 109.47071 * 59.99712 * 6 5 4 32 32 H 1.08994 * 109.47118 * 299.99709 * 6 5 4 33 33 H 0.97001 * 119.99741 * 0.02562 * 9 7 6 34 34 H 1.08997 * 109.88041 * 338.68164 * 12 10 9 35 35 H 1.08998 * 109.87896 * 99.69547 * 12 10 9 36 36 H 0.97009 * 119.99583 * 179.97438 * 17 16 14 37 37 H 1.08999 * 110.36789 * 142.96693 * 22 13 12 38 38 H 1.08996 * 110.36933 * 265.29241 * 22 13 12 39 39 H 0.96704 * 113.99761 * 292.19567 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1222 0.4550 -1.2685 5 6 4.5466 0.4931 -1.3749 6 6 4.9409 0.9922 -2.7665 7 6 6.4431 1.0330 -2.8785 8 8 7.1308 0.6965 -1.9378 9 7 7.0226 1.4434 -4.0240 10 6 8.4830 1.4836 -4.1327 11 1 8.9331 0.6699 -3.5640 12 6 9.0285 2.8475 -3.6596 13 7 10.1256 3.2170 -4.5659 14 6 10.8610 4.3702 -4.5001 15 1 10.4842 5.2204 -3.9508 16 6 12.0907 4.4467 -5.1396 17 7 12.5926 5.6198 -5.4628 18 14 13.0332 2.8847 -5.5414 19 1 12.5465 2.3306 -6.8303 20 1 14.4813 3.1948 -5.6512 21 1 12.8211 1.8871 -4.4621 22 6 10.3023 2.1407 -5.5577 23 6 8.9286 1.4274 -5.6180 24 1 8.2327 1.9729 -6.2555 25 8 9.0720 0.0757 -6.0588 26 1 -1.0501 0.0001 0.0002 27 1 3.0098 -1.0102 0.1838 28 1 3.0090 0.6656 0.7837 29 1 4.9495 -0.5077 -1.2198 30 1 4.9495 1.1680 -0.6197 31 1 4.5380 1.9931 -2.9211 32 1 4.5381 0.3177 -3.5220 33 1 6.4727 1.7128 -4.7763 34 1 8.2400 3.5986 -3.7066 35 1 9.4003 2.7639 -2.6384 36 1 13.4521 5.6732 -5.9093 37 1 10.5551 2.5599 -6.5316 38 1 11.0761 1.4464 -5.2303 39 1 9.3492 -0.0097 -6.9813 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192885688.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:16 Heat of formation + Delta-G solvation = -41.762018 kcal Electronic energy + Delta-G solvation = -21589.995350 eV Core-core repulsion = 18114.684108 eV Total energy + Delta-G solvation = -3475.311241 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = -0.79 seconds Orbital eigenvalues (eV) -40.01121 -38.56292 -37.97114 -35.42191 -34.22201 -33.78912 -32.14418 -31.56586 -28.91328 -27.78324 -27.17674 -24.65232 -23.41891 -21.32958 -20.56818 -20.11824 -18.80002 -17.70765 -17.32106 -17.05777 -16.68309 -16.12309 -16.03406 -15.34576 -15.23345 -14.78881 -14.31249 -13.84432 -13.61245 -13.52109 -13.11114 -12.91312 -12.84781 -12.34629 -12.00488 -11.93774 -11.72837 -11.43382 -11.32891 -10.89486 -10.88616 -10.77476 -10.50633 -10.12304 -10.00000 -9.87570 -9.66529 -9.48796 -9.01829 -8.71478 -7.15650 -6.01475 -3.33738 2.11137 2.44595 2.63326 3.02837 3.27048 3.44561 3.48095 3.67694 4.16992 4.22120 4.47969 4.57163 4.79128 4.84671 4.89930 4.99480 5.04401 5.13794 5.24585 5.27479 5.32657 5.38578 5.51067 5.56918 5.59154 5.78858 5.81682 6.27148 6.33105 6.43754 6.56182 6.71376 6.77880 7.19994 7.50359 7.57127 7.75544 8.21439 8.24410 8.74298 9.60112 10.04952 11.14077 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.036583 B = 0.002935 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.199039 B = 9537.368798 C = 9930.243893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.191 4.191 3 C 0.173 3.827 4 O -0.387 6.387 5 C 0.078 3.922 6 C -0.139 4.139 7 C 0.519 3.481 8 O -0.540 6.540 9 N -0.714 5.714 10 C 0.141 3.859 11 H 0.105 0.895 12 C 0.129 3.871 13 N -0.604 5.604 14 C -0.244 4.244 15 H 0.095 0.905 16 C 0.023 3.977 17 N -0.905 5.905 18 Si 0.882 3.118 19 H -0.286 1.286 20 H -0.300 1.300 21 H -0.275 1.275 22 C 0.085 3.915 23 C 0.082 3.918 24 H 0.074 0.926 25 O -0.562 6.562 26 H 0.222 0.778 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.401 0.599 34 H 0.041 0.959 35 H 0.043 0.957 36 H 0.264 0.736 37 H 0.066 0.934 38 H 0.039 0.961 39 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.712 -11.783 3.812 23.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.191 4.191 3 C 0.098 3.902 4 O -0.307 6.307 5 C 0.001 3.999 6 C -0.179 4.179 7 C 0.305 3.695 8 O -0.417 6.417 9 N -0.365 5.365 10 C 0.036 3.964 11 H 0.122 0.878 12 C 0.002 3.998 13 N -0.332 5.332 14 C -0.371 4.371 15 H 0.113 0.887 16 C -0.176 4.176 17 N -0.548 5.548 18 Si 0.713 3.287 19 H -0.213 1.213 20 H -0.228 1.228 21 H -0.201 1.201 22 C -0.041 4.041 23 C 0.022 3.978 24 H 0.091 0.909 25 O -0.366 6.366 26 H 0.238 0.762 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.235 0.765 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -19.315 -11.914 4.911 23.219 hybrid contribution 0.613 -0.567 -1.042 1.335 sum -18.702 -12.481 3.870 22.814 Atomic orbital electron populations 1.24978 0.95896 1.00604 0.98017 1.22591 0.93935 1.00706 1.01886 1.19057 0.84561 0.99906 0.86713 1.87858 1.21878 1.87711 1.33230 1.22175 0.79551 1.01518 0.96653 1.21450 0.92651 1.04991 0.98780 1.20309 0.89857 0.76702 0.82626 1.90732 1.65270 1.48081 1.37655 1.45891 1.07442 1.67341 1.15778 1.22002 0.79215 0.99807 0.95367 0.87753 1.21720 0.91465 0.92050 0.94543 1.44591 1.39051 1.19789 1.29781 1.18645 0.98444 0.87840 1.32154 0.88720 1.25020 0.96978 0.96399 0.99216 1.69841 1.19967 1.22933 1.42102 0.86999 0.79101 0.84441 0.78206 1.21325 1.22801 1.20062 1.22602 0.94682 0.91498 0.95304 1.23287 0.97682 0.82490 0.94384 0.90850 1.86471 1.91385 1.25825 1.32945 0.76162 0.90613 0.90536 0.91937 0.91797 0.87806 0.87972 0.76464 0.94130 0.93876 0.92582 0.91629 0.94370 0.77411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.40 19.25 29.55 0.57 -0.83 16 2 C -0.19 -1.82 13.73 -37.13 -0.51 -2.33 16 3 C 0.17 1.49 6.41 34.37 0.22 1.71 16 4 O -0.39 -4.09 10.30 -35.23 -0.36 -4.45 16 5 C 0.08 0.79 5.23 37.16 0.19 0.98 16 6 C -0.14 -1.33 6.07 -27.88 -0.17 -1.50 16 7 C 0.52 6.96 7.83 -10.98 -0.09 6.88 16 8 O -0.54 -9.38 15.67 5.56 0.09 -9.29 16 9 N -0.71 -9.36 5.12 -52.03 -0.27 -9.63 16 10 C 0.14 2.39 3.01 -66.09 -0.20 2.19 16 11 H 0.10 1.98 7.62 -51.93 -0.40 1.59 16 12 C 0.13 2.59 6.99 -3.06 -0.02 2.57 16 13 N -0.60 -14.41 3.21 -170.07 -0.55 -14.96 16 14 C -0.24 -6.85 10.57 -15.06 -0.16 -7.01 16 15 H 0.10 2.81 8.06 -52.48 -0.42 2.39 16 16 C 0.02 0.66 5.43 -17.43 -0.09 0.56 16 17 N -0.91 -27.53 13.97 55.49 0.78 -26.75 16 18 Si 0.88 22.33 24.27 -169.99 -4.13 18.20 16 19 H -0.29 -6.81 6.49 56.52 0.37 -6.44 16 20 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 21 H -0.27 -7.01 6.66 56.52 0.38 -6.64 16 22 C 0.09 1.79 4.43 -2.53 -0.01 1.78 16 23 C 0.08 1.33 4.05 -24.58 -0.10 1.23 16 24 H 0.07 1.04 8.01 -51.93 -0.42 0.62 16 25 O -0.56 -8.23 13.47 -35.23 -0.47 -8.70 16 26 H 0.22 0.88 7.80 -54.09 -0.42 0.46 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 30 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.40 4.02 8.55 -40.82 -0.35 3.67 16 34 H 0.04 0.79 8.03 -51.93 -0.42 0.37 16 35 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.07 1.42 6.63 -51.93 -0.34 1.07 16 38 H 0.04 0.87 5.58 -51.93 -0.29 0.58 16 39 H 0.38 3.89 9.12 45.56 0.42 4.31 16 LS Contribution 333.88 15.07 5.03 5.03 Total: -1.00 -35.27 333.88 -5.04 -40.31 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -4.79 Total: 3.99 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -0.37 Total: 6.24 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.04 Total: -51.34 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.75 Total: -22.44 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.13 Total: 18.20 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.27 -5.04 -40.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192885688.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.449 kcal (2) G-P(sol) polarization free energy of solvation -35.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.79 seconds