Wall clock time and date at job start Tue Mar 31 2020 03:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 O 1.42907 * 109.47304 * 109.69682 * 3 2 1 5 5 C 1.42894 * 114.00079 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.46903 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.46843 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00290 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99950 * 179.97438 * 7 6 5 10 10 C 1.46494 * 120.00121 * 179.97438 * 9 7 6 11 11 H 1.09003 * 110.64091 * 34.30353 * 10 9 7 12 12 C 1.54331 * 110.72422 * 271.16091 * 10 9 7 13 13 N 1.47017 * 107.27173 * 219.26746 * 12 10 9 14 14 C 1.36932 * 125.64895 * 178.90830 * 13 12 10 15 15 H 1.08003 * 120.00075 * 341.51282 * 14 13 12 16 16 C 1.38811 * 120.00333 * 161.51938 * 14 13 12 17 17 N 1.31626 * 119.99981 * 157.63017 * 16 14 13 18 18 Si 1.86803 * 120.00108 * 337.63363 * 16 14 13 19 19 H 1.48496 * 109.47350 * 84.53375 * 18 16 14 20 20 H 1.48498 * 109.47118 * 204.53604 * 18 16 14 21 21 H 1.48497 * 109.46713 * 324.53514 * 18 16 14 22 22 C 1.47428 * 108.70674 * 358.93941 * 13 12 10 23 23 C 1.54909 * 104.83151 * 24.12822 * 22 13 12 24 24 H 1.09007 * 111.00471 * 81.06358 * 23 22 13 25 25 O 1.42895 * 111.00828 * 204.91865 * 23 22 13 26 26 H 4.38452 * 5.44477 * 180.02562 * 4 1 2 27 27 H 1.08997 * 109.47534 * 349.69605 * 3 2 1 28 28 H 1.09002 * 109.47265 * 229.69382 * 3 2 1 29 29 H 1.08996 * 109.47492 * 60.00080 * 5 4 3 30 30 H 1.09000 * 109.47251 * 299.99561 * 5 4 3 31 31 H 1.08996 * 109.47071 * 59.99712 * 6 5 4 32 32 H 1.08994 * 109.47118 * 299.99709 * 6 5 4 33 33 H 0.97001 * 119.99741 * 0.02562 * 9 7 6 34 34 H 1.08997 * 109.88041 * 338.68164 * 12 10 9 35 35 H 1.08998 * 109.87896 * 99.69547 * 12 10 9 36 36 H 0.97009 * 119.99583 * 179.97438 * 17 16 14 37 37 H 1.08999 * 110.36789 * 142.96693 * 22 13 12 38 38 H 1.08996 * 110.36933 * 265.29241 * 22 13 12 39 39 H 0.96704 * 113.99761 * 292.19567 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1222 0.4550 -1.2685 5 6 4.5466 0.4931 -1.3749 6 6 4.9409 0.9922 -2.7665 7 6 6.4431 1.0330 -2.8785 8 8 7.1308 0.6965 -1.9378 9 7 7.0226 1.4434 -4.0240 10 6 8.4830 1.4836 -4.1327 11 1 8.9331 0.6699 -3.5640 12 6 9.0285 2.8475 -3.6596 13 7 10.1256 3.2170 -4.5659 14 6 10.8610 4.3702 -4.5001 15 1 10.4842 5.2204 -3.9508 16 6 12.0907 4.4467 -5.1396 17 7 12.5926 5.6198 -5.4628 18 14 13.0332 2.8847 -5.5414 19 1 12.5465 2.3306 -6.8303 20 1 14.4813 3.1948 -5.6512 21 1 12.8211 1.8871 -4.4621 22 6 10.3023 2.1407 -5.5577 23 6 8.9286 1.4274 -5.6180 24 1 8.2327 1.9729 -6.2555 25 8 9.0720 0.0757 -6.0588 26 1 -1.0501 0.0001 0.0002 27 1 3.0098 -1.0102 0.1838 28 1 3.0090 0.6656 0.7837 29 1 4.9495 -0.5077 -1.2198 30 1 4.9495 1.1680 -0.6197 31 1 4.5380 1.9931 -2.9211 32 1 4.5381 0.3177 -3.5220 33 1 6.4727 1.7128 -4.7763 34 1 8.2400 3.5986 -3.7066 35 1 9.4003 2.7639 -2.6384 36 1 13.4521 5.6732 -5.9093 37 1 10.5551 2.5599 -6.5316 38 1 11.0761 1.4464 -5.2303 39 1 9.3492 -0.0097 -6.9813 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192885688.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:14 Heat of formation + Delta-G solvation = -71.855458 kcal Electronic energy + Delta-G solvation = -21591.300299 eV Core-core repulsion = 18114.684108 eV Total energy + Delta-G solvation = -3476.616191 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.20181 -39.74499 -38.93720 -36.83191 -35.61422 -34.45179 -33.98560 -32.57773 -30.50081 -29.29413 -27.94064 -26.28345 -24.50730 -22.95899 -21.87791 -21.40188 -19.46196 -19.10716 -18.73457 -18.27445 -17.65966 -17.43706 -16.99854 -16.61510 -16.28250 -15.96480 -15.69657 -15.45153 -14.99726 -14.74483 -14.52894 -14.30611 -13.98200 -13.73756 -13.50418 -13.27801 -12.98247 -12.73202 -12.62412 -12.47669 -12.36510 -11.69221 -11.64014 -11.53948 -11.44618 -11.27814 -10.94579 -10.79992 -10.57105 -10.18786 -9.16163 -8.22638 -5.51945 1.25000 1.38498 1.42994 1.46571 1.57419 1.82752 2.02320 2.36019 2.79572 2.95253 3.07526 3.38123 3.54457 3.63445 3.73098 3.86531 3.97579 4.07010 4.20311 4.27701 4.32534 4.42142 4.44970 4.54001 4.68282 4.79640 4.83320 4.85320 4.89770 4.94201 5.03732 5.39729 5.58499 6.04490 6.06286 6.49366 6.60136 6.65461 6.80049 7.20130 7.45152 7.97989 8.96510 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.036583 B = 0.002935 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.199039 B = 9537.368798 C = 9930.243893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.239 4.239 3 C 0.166 3.834 4 O -0.398 6.398 5 C 0.079 3.921 6 C -0.127 4.127 7 C 0.518 3.482 8 O -0.584 6.584 9 N -0.701 5.701 10 C 0.153 3.847 11 H 0.083 0.917 12 C 0.128 3.872 13 N -0.620 5.620 14 C -0.240 4.240 15 H 0.063 0.937 16 C -0.032 4.032 17 N -0.950 5.950 18 Si 0.944 3.056 19 H -0.258 1.258 20 H -0.306 1.306 21 H -0.281 1.281 22 C 0.076 3.924 23 C 0.107 3.893 24 H 0.106 0.894 25 O -0.563 6.563 26 H 0.254 0.746 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.420 0.580 34 H 0.049 0.951 35 H 0.021 0.979 36 H 0.265 0.735 37 H 0.062 0.938 38 H 0.026 0.974 39 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.014 -13.689 2.547 26.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.239 4.239 3 C 0.091 3.909 4 O -0.318 6.318 5 C 0.002 3.998 6 C -0.166 4.166 7 C 0.306 3.694 8 O -0.464 6.464 9 N -0.353 5.353 10 C 0.047 3.953 11 H 0.101 0.899 12 C 0.002 3.998 13 N -0.348 5.348 14 C -0.368 4.368 15 H 0.081 0.919 16 C -0.227 4.227 17 N -0.596 5.596 18 Si 0.773 3.227 19 H -0.183 1.183 20 H -0.234 1.234 21 H -0.207 1.207 22 C -0.050 4.050 23 C 0.046 3.954 24 H 0.124 0.876 25 O -0.371 6.371 26 H 0.270 0.730 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.258 0.742 34 H 0.067 0.933 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.044 0.956 39 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -21.673 -13.855 3.600 25.974 hybrid contribution 1.217 0.043 -0.563 1.342 sum -20.456 -13.812 3.037 24.869 Atomic orbital electron populations 1.25868 0.96809 0.98919 0.96189 1.23074 0.94838 1.02378 1.03627 1.19227 0.84640 1.00794 0.86208 1.87817 1.21740 1.87942 1.34346 1.22118 0.79577 1.01210 0.96891 1.21402 0.89341 1.06753 0.99120 1.20984 0.91322 0.75332 0.81719 1.90724 1.66581 1.49899 1.39153 1.45694 1.05830 1.67132 1.16667 1.21547 0.81353 0.96695 0.95749 0.89858 1.21791 0.90595 0.94427 0.93003 1.44638 1.39128 1.19374 1.31695 1.18567 0.98889 0.88613 1.30722 0.91945 1.25623 0.97875 0.99122 1.00069 1.69955 1.20496 1.25029 1.44122 0.85992 0.77174 0.80538 0.79021 1.18279 1.23417 1.20712 1.22741 0.97588 0.90633 0.93995 1.22975 0.94975 0.83172 0.94267 0.87629 1.86447 1.91305 1.24291 1.35084 0.72983 0.89462 0.89672 0.92287 0.92621 0.85855 0.85505 0.74167 0.93282 0.96103 0.92619 0.92015 0.95640 0.74814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 19.25 74.32 1.43 -0.77 16 2 C -0.24 -4.27 13.73 31.12 0.43 -3.84 16 3 C 0.17 2.74 6.41 70.18 0.45 3.19 16 4 O -0.40 -7.86 10.30 -148.98 -1.53 -9.39 16 5 C 0.08 1.49 5.23 71.98 0.38 1.87 16 6 C -0.13 -2.09 6.07 29.85 0.18 -1.91 16 7 C 0.52 12.93 7.83 87.66 0.69 13.62 16 8 O -0.58 -20.01 15.67 -3.03 -0.05 -20.05 16 9 N -0.70 -16.51 5.12 -436.90 -2.24 -18.75 16 10 C 0.15 4.92 3.01 46.19 0.14 5.06 16 11 H 0.08 3.10 7.62 -2.39 -0.02 3.08 16 12 C 0.13 5.13 6.99 86.73 0.61 5.74 16 13 N -0.62 -29.52 3.21 -692.00 -2.22 -31.74 16 14 C -0.24 -13.75 10.57 84.03 0.89 -12.86 16 15 H 0.06 3.89 8.06 -2.91 -0.02 3.86 16 16 C -0.03 -1.85 5.43 84.86 0.46 -1.39 16 17 N -0.95 -59.15 13.97 21.65 0.30 -58.85 16 18 Si 0.94 46.43 24.27 68.60 1.66 48.09 16 19 H -0.26 -11.36 6.49 99.48 0.65 -10.71 16 20 H -0.31 -15.21 7.11 99.48 0.71 -14.50 16 21 H -0.28 -13.95 6.66 99.48 0.66 -13.28 16 22 C 0.08 3.05 4.43 86.85 0.38 3.43 16 23 C 0.11 3.11 4.05 31.99 0.13 3.24 16 24 H 0.11 2.48 8.01 -2.38 -0.02 2.46 16 25 O -0.56 -14.28 13.47 -148.98 -2.01 -16.29 16 26 H 0.25 1.23 7.80 -4.41 -0.03 1.20 16 27 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 28 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 1.14 8.10 -2.39 -0.02 1.12 16 30 H 0.06 1.13 8.10 -2.39 -0.02 1.11 16 31 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.42 6.73 8.55 -92.71 -0.79 5.94 16 34 H 0.05 1.88 8.03 -2.39 -0.02 1.86 16 35 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.26 15.60 8.31 -92.70 -0.77 14.83 16 37 H 0.06 2.52 6.63 -2.39 -0.02 2.50 16 38 H 0.03 1.11 5.58 -2.39 -0.01 1.10 16 39 H 0.40 6.41 9.12 -74.05 -0.68 5.74 16 Total: -1.00 -78.55 333.88 -0.42 -78.97 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -0.50 Total: 12.63 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: 6.16 Total: 15.37 kcal Atomic # 7 Polarization: -105.18 SS G_CDS: -4.15 Total: -109.33 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -3.59 Total: -45.73 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.66 Total: 48.09 kcal Total: -78.55 -0.42 -78.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192885688.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.112 kcal (2) G-P(sol) polarization free energy of solvation -78.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds