Wall clock time and date at job start Tue Mar 31 2020 03:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 O 1.42903 * 109.46972 * 322.86958 * 3 2 1 5 5 C 1.42899 * 113.99629 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47444 * 29.99805 * 5 4 3 7 7 C 1.53008 * 109.47438 * 270.00038 * 5 4 3 8 8 C 1.50704 * 109.47338 * 150.00083 * 5 4 3 9 9 O 1.21282 * 119.99404 * 4.99870 * 8 5 4 10 10 N 1.34773 * 120.00398 * 184.99445 * 8 5 4 11 11 C 1.46496 * 120.00110 * 179.97438 * 10 8 5 12 12 H 1.09003 * 110.64135 * 36.68920 * 11 10 8 13 13 C 1.54329 * 110.72170 * 273.55410 * 11 10 8 14 14 N 1.47026 * 107.26706 * 219.44332 * 13 11 10 15 15 C 1.36938 * 125.64323 * 178.97140 * 14 13 11 16 16 H 1.07997 * 120.00091 * 0.02562 * 15 14 13 17 17 C 1.38812 * 119.99850 * 179.97438 * 15 14 13 18 18 N 1.31619 * 119.99877 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99981 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47065 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.47195 * 120.00772 * 19 17 15 22 22 H 1.48512 * 109.47016 * 240.00198 * 19 17 15 23 23 C 1.47422 * 108.70713 * 358.93912 * 14 13 11 24 24 C 1.54911 * 104.82946 * 24.12790 * 23 14 13 25 25 H 1.09003 * 111.00454 * 204.91810 * 24 23 14 26 26 O 1.42895 * 111.00350 * 81.06921 * 24 23 14 27 27 H 4.38444 * 5.44449 * 179.97438 * 4 1 2 28 28 H 1.09002 * 109.47132 * 82.87190 * 3 2 1 29 29 H 1.09001 * 109.47213 * 202.87220 * 3 2 1 30 30 H 1.09000 * 109.46387 * 59.99775 * 7 5 4 31 31 H 1.08994 * 109.47301 * 180.02562 * 7 5 4 32 32 H 1.08999 * 109.46614 * 300.00276 * 7 5 4 33 33 H 0.97004 * 119.99996 * 0.02562 * 10 8 5 34 34 H 1.09001 * 109.87799 * 338.85804 * 13 11 10 35 35 H 1.09001 * 109.88365 * 100.02486 * 13 11 10 36 36 H 0.97003 * 119.99907 * 179.97438 * 18 17 15 37 37 H 1.08992 * 110.36493 * 142.96776 * 23 14 13 38 38 H 1.08997 * 110.36505 * 265.18460 * 23 14 13 39 39 H 0.96701 * 114.00774 * 67.80112 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1228 -1.0733 0.8133 5 6 4.5473 -1.1622 0.8818 6 1 4.9792 -0.1673 0.7735 7 6 5.0569 -2.0645 -0.2439 8 6 4.9510 -1.7429 2.2126 9 8 4.1025 -2.1342 2.9859 10 7 6.2548 -1.8274 2.5435 11 6 6.6471 -2.3914 3.8374 12 1 5.9903 -3.2169 4.1118 13 6 6.6421 -1.3030 4.9315 14 7 7.8068 -1.5470 5.7950 15 6 8.1723 -0.7885 6.8750 16 1 7.5836 0.0728 7.1540 17 6 9.2990 -1.1273 7.6116 18 7 10.0162 -2.1773 7.2718 19 14 9.7973 -0.0931 9.0853 20 1 8.8324 1.0227 9.2558 21 1 9.7968 -0.9384 10.3061 22 1 11.1587 0.4582 8.8655 23 6 8.5154 -2.7438 5.3062 24 6 8.1291 -2.8497 3.8098 25 1 8.2137 -3.8773 3.4562 26 8 8.9229 -1.9688 3.0124 27 1 -1.0499 -0.0001 0.0003 28 1 3.0094 -0.1267 -1.0197 29 1 3.0089 0.9477 0.3994 30 1 4.7649 -1.6445 -1.2064 31 1 6.1434 -2.1327 -0.1914 32 1 4.6250 -3.0595 -0.1356 33 1 6.9334 -1.5141 1.9251 34 1 6.7201 -0.3169 4.4737 35 1 5.7255 -1.3705 5.5175 36 1 10.8037 -2.4139 7.7864 37 1 9.5927 -2.6163 5.4119 38 1 8.1838 -3.6290 5.8489 39 1 9.8569 -2.2149 2.9652 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219602852.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:09 Heat of formation + Delta-G solvation = -64.248071 kcal Electronic energy + Delta-G solvation = -22232.761291 eV Core-core repulsion = 18756.474981 eV Total energy + Delta-G solvation = -3476.286310 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.26591 -39.75573 -38.63219 -36.36408 -35.50710 -34.45795 -33.68104 -32.20098 -30.22602 -28.70283 -28.06951 -26.56770 -24.95958 -22.44430 -21.82411 -21.23278 -19.69183 -19.19610 -18.37118 -18.08762 -17.84891 -16.90678 -16.80001 -16.41628 -16.03100 -15.96849 -15.60023 -15.06593 -14.67448 -14.48039 -14.31660 -13.99816 -13.62449 -13.43045 -13.22930 -13.14884 -12.92113 -12.76731 -12.43359 -12.24963 -12.09828 -11.91074 -11.84411 -11.71088 -11.56016 -10.96041 -10.86350 -10.72475 -10.46117 -10.12453 -8.91270 -7.81749 -5.25075 1.34078 1.46070 1.46889 1.54404 1.57442 1.81601 2.04352 2.47927 3.01358 3.20824 3.29312 3.52150 3.65146 3.77020 3.85543 3.92840 3.93794 4.09433 4.26518 4.30387 4.47227 4.48772 4.73152 4.74133 4.82134 4.84960 4.95864 5.01489 5.23953 5.33720 5.44104 5.47408 5.71203 6.00122 6.25240 6.58519 6.60132 6.92817 7.08239 7.24151 7.72152 8.34844 9.20461 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.027308 B = 0.003543 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.077340 B = 7900.244662 C = 8555.285445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.238 4.238 3 C 0.163 3.837 4 O -0.388 6.388 5 C 0.077 3.923 6 H 0.123 0.877 7 C -0.164 4.164 8 C 0.505 3.495 9 O -0.577 6.577 10 N -0.690 5.690 11 C 0.154 3.846 12 H 0.092 0.908 13 C 0.131 3.869 14 N -0.616 5.616 15 C -0.241 4.241 16 H 0.072 0.928 17 C -0.060 4.060 18 N -0.945 5.945 19 Si 0.981 3.019 20 H -0.273 1.273 21 H -0.291 1.291 22 H -0.285 1.285 23 C 0.125 3.875 24 C 0.095 3.905 25 H 0.097 0.903 26 O -0.561 6.561 27 H 0.252 0.748 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.054 0.946 33 H 0.421 0.579 34 H 0.025 0.975 35 H 0.005 0.995 36 H 0.250 0.750 37 H 0.093 0.907 38 H -0.001 1.001 39 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.437 1.884 -20.117 21.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.238 4.238 3 C 0.088 3.912 4 O -0.307 6.307 5 C 0.016 3.984 6 H 0.140 0.860 7 C -0.221 4.221 8 C 0.292 3.708 9 O -0.456 6.456 10 N -0.344 5.344 11 C 0.048 3.952 12 H 0.110 0.890 13 C 0.004 3.996 14 N -0.343 5.343 15 C -0.370 4.370 16 H 0.090 0.910 17 C -0.253 4.253 18 N -0.594 5.594 19 Si 0.809 3.191 20 H -0.198 1.198 21 H -0.218 1.218 22 H -0.212 1.212 23 C -0.001 4.001 24 C 0.034 3.966 25 H 0.115 0.885 26 O -0.369 6.369 27 H 0.269 0.731 28 H 0.124 0.876 29 H 0.107 0.893 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.073 0.927 33 H 0.260 0.740 34 H 0.043 0.957 35 H 0.023 0.977 36 H 0.060 0.940 37 H 0.110 0.890 38 H 0.017 0.983 39 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -8.577 1.802 -19.411 21.298 hybrid contribution 0.873 0.341 1.176 1.504 sum -7.704 2.144 -18.235 19.911 Atomic orbital electron populations 1.25870 0.96929 0.97234 0.98306 1.23177 0.95126 1.03024 1.02520 1.19484 0.84566 0.90496 0.96669 1.88072 1.20228 1.51630 1.70781 1.22035 0.82326 1.02238 0.91800 0.85988 1.22246 1.02882 0.99525 0.97452 1.21221 0.82317 0.78351 0.88946 1.90709 1.51530 1.49589 1.53736 1.45569 1.07067 1.63236 1.18542 1.21795 0.94704 0.95364 0.83364 0.89017 1.21641 0.89390 0.96908 0.91616 1.44569 1.27557 1.30563 1.31566 1.19418 1.07587 1.06563 1.03441 0.91007 1.25548 0.97922 0.99531 1.02269 1.69945 1.19085 1.28499 1.41893 0.84979 0.77737 0.77806 0.78576 1.19787 1.21803 1.21191 1.22529 1.00284 0.87238 0.90001 1.23219 0.88809 0.93243 0.91337 0.88542 1.86188 1.25024 1.55294 1.70393 0.73135 0.87574 0.89297 0.88519 0.88713 0.92662 0.74002 0.95745 0.97675 0.94021 0.88951 0.98306 0.75247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 19.25 74.32 1.43 -1.61 16 2 C -0.24 -5.22 13.73 31.12 0.43 -4.79 16 3 C 0.16 2.99 6.22 70.17 0.44 3.42 16 4 O -0.39 -10.23 9.48 -129.99 -1.23 -11.47 16 5 C 0.08 1.62 3.13 29.85 0.09 1.71 16 6 H 0.12 1.76 7.79 -2.39 -0.02 1.74 16 7 C -0.16 -2.34 9.48 71.98 0.68 -1.66 16 8 C 0.50 15.74 7.18 87.66 0.63 16.37 16 9 O -0.58 -24.39 16.23 15.95 0.26 -24.13 16 10 N -0.69 -20.05 5.05 -436.92 -2.21 -22.25 16 11 C 0.15 5.65 3.12 46.18 0.14 5.80 16 12 H 0.09 3.56 7.69 -2.39 -0.02 3.54 16 13 C 0.13 6.05 6.99 86.73 0.61 6.65 16 14 N -0.62 -32.59 3.39 -691.98 -2.35 -34.94 16 15 C -0.24 -13.91 10.27 84.03 0.86 -13.05 16 16 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 17 C -0.06 -3.39 5.49 84.86 0.47 -2.92 16 18 N -0.94 -54.56 10.09 21.65 0.22 -54.34 16 19 Si 0.98 45.81 29.55 68.60 2.03 47.84 16 20 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 23 C 0.12 5.88 5.62 86.86 0.49 6.37 16 24 C 0.09 3.22 4.28 31.99 0.14 3.36 16 25 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 26 O -0.56 -16.78 12.23 -148.98 -1.82 -18.60 16 27 H 0.25 2.37 7.80 -4.42 -0.03 2.34 16 28 H 0.11 1.21 7.87 -2.39 -0.02 1.19 16 29 H 0.09 1.33 8.08 -2.39 -0.02 1.32 16 30 H 0.10 0.88 7.87 -2.39 -0.02 0.86 16 31 H 0.09 1.02 7.92 -2.39 -0.02 1.00 16 32 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 33 H 0.42 9.83 7.35 -92.70 -0.68 9.15 16 34 H 0.02 1.14 8.03 -2.39 -0.02 1.12 16 35 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.25 13.92 8.31 -92.71 -0.77 13.14 16 37 H 0.09 4.79 5.87 -2.39 -0.01 4.77 16 38 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 39 H 0.40 9.16 9.12 -74.06 -0.68 8.49 16 Total: -1.00 -79.52 336.22 1.01 -78.51 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -0.29 Total: 19.73 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: 6.40 Total: 19.65 kcal Atomic # 7 Polarization: -107.20 SS G_CDS: -4.34 Total: -111.53 kcal Atomic # 8 Polarization: -51.40 SS G_CDS: -2.80 Total: -54.20 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -79.52 1.01 -78.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219602852.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.260 kcal (2) G-P(sol) polarization free energy of solvation -79.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds