Wall clock time and date at job start Tue Mar 31 2020 03:01:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17399 * 1
3 3 C 1.47204 * 179.97438 * 2 1
4 4 O 1.42899 * 109.46900 * 241.11638 * 3 2 1
5 5 C 1.42903 * 113.99940 * 179.97438 * 4 3 2
6 6 C 1.52996 * 109.47425 * 179.97438 * 5 4 3
7 7 C 1.50698 * 109.47270 * 179.97438 * 6 5 4
8 8 O 1.21281 * 119.99811 * 0.02562 * 7 6 5
9 9 N 1.34781 * 119.99963 * 179.97438 * 7 6 5
10 10 C 1.46497 * 119.99953 * 180.02562 * 9 7 6
11 11 H 1.08997 * 110.77693 * 31.76417 * 10 9 7
12 12 C 1.54325 * 110.72131 * 268.52482 * 10 9 7
13 13 N 1.47290 * 107.30599 * 219.45483 * 12 10 9
14 14 C 1.36938 * 125.79079 * 178.92205 * 13 12 10
15 15 H 1.07995 * 120.00281 * 0.02562 * 14 13 12
16 16 C 1.38810 * 119.99650 * 180.02562 * 14 13 12
17 17 N 1.31621 * 120.00025 * 0.02562 * 16 14 13
18 18 Si 1.86799 * 120.00113 * 180.02562 * 16 14 13
19 19 H 1.48506 * 109.47190 * 89.99819 * 18 16 14
20 20 H 1.48500 * 109.47472 * 210.00112 * 18 16 14
21 21 H 1.48507 * 109.46699 * 329.99987 * 18 16 14
22 22 C 1.47425 * 108.55742 * 358.92448 * 13 12 10
23 23 C 1.54908 * 104.92961 * 24.15407 * 22 13 12
24 24 H 1.08999 * 111.00647 * 204.85975 * 23 22 13
25 25 O 1.42902 * 111.00325 * 81.05136 * 23 22 13
26 26 H 4.38442 * 5.44376 * 179.97438 * 4 1 2
27 27 H 1.09003 * 109.47295 * 121.11513 * 3 2 1
28 28 H 1.08997 * 109.47040 * 1.11562 * 3 2 1
29 29 H 1.09005 * 109.47014 * 59.99837 * 5 4 3
30 30 H 1.09005 * 109.47043 * 299.99973 * 5 4 3
31 31 H 1.09005 * 109.47029 * 60.00004 * 6 5 4
32 32 H 1.09005 * 109.47117 * 300.00086 * 6 5 4
33 33 H 0.96996 * 119.99924 * 0.02562 * 9 7 6
34 34 H 1.09004 * 109.88239 * 338.86280 * 12 10 9
35 35 H 1.08995 * 109.88239 * 99.87201 * 12 10 9
36 36 H 0.97001 * 119.99611 * 180.02562 * 17 16 14
37 37 H 1.09002 * 110.36696 * 265.26054 * 22 13 12
38 38 H 1.08995 * 110.36608 * 143.04891 * 22 13 12
39 39 H 0.96700 * 114.00230 * 61.44969 * 25 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 8 3.1220 0.6517 1.1797
5 6 4.5466 0.7063 1.2788
6 6 4.9408 1.4211 2.5728
7 6 6.4430 1.4782 2.6776
8 8 7.1307 0.9951 1.8031
9 7 7.0224 2.0669 3.7426
10 6 8.4828 2.1229 3.8442
11 1 8.9369 2.1892 2.8556
12 6 9.0240 0.8989 4.6127
13 7 10.1201 1.3726 5.4750
14 6 10.8528 0.5998 6.3360
15 1 10.6448 -0.4562 6.4241
16 6 11.8629 1.1740 7.0954
17 7 12.1161 2.4612 6.9884
18 14 12.8630 0.1199 8.2693
19 1 14.0474 -0.4253 7.5585
20 1 13.3124 0.9476 9.4175
21 1 12.0242 -1.0007 8.7653
22 6 10.2971 2.8197 5.2565
23 6 8.9259 3.3150 4.7329
24 1 9.0386 4.2231 4.1407
25 8 8.0099 3.5200 5.8104
26 1 -1.0501 0.0000 -0.0003
27 1 3.0092 0.5319 -0.8798
28 1 3.0098 -1.0266 -0.0200
29 1 4.9495 1.2519 0.4255
30 1 4.9494 -0.3065 1.2856
31 1 4.5378 0.8759 3.4263
32 1 4.5379 2.4340 2.5656
33 1 6.4724 2.4536 4.4418
34 1 8.2325 0.4656 5.2243
35 1 9.3979 0.1551 3.9091
36 1 12.8222 2.8623 7.5189
37 1 11.0742 2.9989 4.5133
38 1 10.5475 3.3170 6.1935
39 1 8.2948 4.1899 6.4469
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001219611668.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:01:19
Heat of formation + Delta-G solvation = -43.671231 kcal
Electronic energy + Delta-G solvation = -21621.892133 eV
Core-core repulsion = 18146.498102 eV
Total energy + Delta-G solvation = -3475.394031 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 282.141 amu
Computer time = 1.35 seconds
Orbital eigenvalues (eV)
-39.82741 -38.40549 -37.74241 -34.72131 -33.98950 -33.74548 -32.00309 -31.29339
-28.56480 -27.42950 -26.82025 -24.67457 -23.46147 -20.73930 -20.30271 -19.79203
-18.75124 -17.61953 -17.12777 -16.73333 -16.57043 -15.96609 -15.56839 -15.11358
-15.01558 -14.78745 -14.26344 -13.76228 -13.46477 -13.05100 -13.00847 -12.75889
-12.48972 -11.95622 -11.70028 -11.66927 -11.35073 -11.11171 -10.87636 -10.85429
-10.73366 -10.64447 -10.35848 -10.05973 -9.85723 -9.82962 -9.73035 -9.26602
-8.73533 -8.69164 -6.87662 -5.71562 -3.11507 2.15268 2.47504 2.75830
3.18450 3.38445 3.43531 3.45345 3.76227 4.26764 4.46660 4.60771
4.72555 4.87490 4.94321 5.08073 5.12507 5.31497 5.36424 5.40628
5.48491 5.55911 5.63163 5.65481 5.71328 5.90878 6.04720 6.27223
6.52067 6.67230 6.83220 6.92056 7.22945 7.23667 7.53450 7.68776
7.78204 8.10489 8.29011 8.41393 9.15882 9.76611 10.40226 11.33570
Molecular weight = 282.14amu
Principal moments of inertia in cm(-1)
A = 0.036319 B = 0.002798 C = 0.002706
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 770.754949 B =10006.103178 C =10344.138742
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C -0.190 4.190
3 C 0.173 3.827
4 O -0.387 6.387
5 C 0.078 3.922
6 C -0.139 4.139
7 C 0.514 3.486
8 O -0.549 6.549
9 N -0.705 5.705
10 C 0.141 3.859
11 H 0.102 0.898
12 C 0.130 3.870
13 N -0.597 5.597
14 C -0.216 4.216
15 H 0.078 0.922
16 C -0.014 4.014
17 N -0.928 5.928
18 Si 0.917 3.083
19 H -0.289 1.289
20 H -0.290 1.290
21 H -0.281 1.281
22 C 0.125 3.875
23 C 0.067 3.933
24 H 0.059 0.941
25 O -0.563 6.563
26 H 0.221 0.779
27 H 0.076 0.924
28 H 0.076 0.924
29 H 0.062 0.938
30 H 0.063 0.937
31 H 0.102 0.898
32 H 0.101 0.899
33 H 0.410 0.590
34 H 0.030 0.970
35 H 0.028 0.972
36 H 0.252 0.748
37 H 0.023 0.977
38 H 0.116 0.884
39 H 0.381 0.619
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.420 1.229 -10.221 20.235
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.191 4.191
3 C 0.097 3.903
4 O -0.307 6.307
5 C 0.002 3.998
6 C -0.179 4.179
7 C 0.300 3.700
8 O -0.428 6.428
9 N -0.356 5.356
10 C 0.036 3.964
11 H 0.120 0.880
12 C 0.003 3.997
13 N -0.324 5.324
14 C -0.344 4.344
15 H 0.096 0.904
16 C -0.208 4.208
17 N -0.577 5.577
18 Si 0.748 3.252
19 H -0.216 1.216
20 H -0.216 1.216
21 H -0.207 1.207
22 C 0.000 4.000
23 C 0.007 3.993
24 H 0.076 0.924
25 O -0.369 6.369
26 H 0.238 0.762
27 H 0.094 0.906
28 H 0.094 0.906
29 H 0.080 0.920
30 H 0.081 0.919
31 H 0.121 0.879
32 H 0.119 0.881
33 H 0.245 0.755
34 H 0.048 0.952
35 H 0.046 0.954
36 H 0.063 0.937
37 H 0.040 0.960
38 H 0.133 0.867
39 H 0.229 0.771
Dipole moment (debyes) X Y Z Total
from point charges -17.184 0.507 -10.859 20.334
hybrid contribution 0.649 -0.034 1.022 1.211
sum -16.535 0.473 -9.837 19.246
Atomic orbital electron populations
1.24971 0.95891 1.00253 0.98465 1.22605 0.93947 1.00846 1.01660
1.19055 0.84546 0.97892 0.88765 1.87866 1.21978 1.79216 1.41615
1.22179 0.79429 1.00812 0.97388 1.21448 0.92970 1.03836 0.99651
1.20341 0.89807 0.77929 0.81918 1.90708 1.65285 1.46777 1.39998
1.45812 1.07906 1.58504 1.23377 1.22154 0.79309 0.95923 0.98995
0.88015 1.21648 0.91436 0.94014 0.92600 1.44356 1.37202 1.04759
1.46048 1.19100 1.10020 0.91505 1.13773 0.90384 1.24768 0.99253
0.96333 1.00482 1.69715 1.34060 1.09595 1.44315 0.86019 0.80004
0.78961 0.80212 1.21616 1.21648 1.20686 1.22627 0.89605 0.85853
1.01947 1.23574 0.92581 0.95391 0.87801 0.92362 1.86202 1.47631
1.64212 1.38858 0.76174 0.90634 0.90587 0.91984 0.91876 0.87936
0.88058 0.75466 0.95200 0.95405 0.93702 0.95957 0.86686 0.77134
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.46 19.25 29.55 0.57 -0.89 16
2 C -0.19 -1.88 13.73 -37.12 -0.51 -2.39 16
3 C 0.17 1.56 6.41 34.37 0.22 1.78 16
4 O -0.39 -4.33 10.30 -35.23 -0.36 -4.69 16
5 C 0.08 0.85 5.23 37.16 0.19 1.05 16
6 C -0.14 -1.50 6.07 -27.89 -0.17 -1.67 16
7 C 0.51 7.52 7.83 -10.98 -0.09 7.43 16
8 O -0.55 -9.92 15.63 5.56 0.09 -9.83 16
9 N -0.70 -10.65 5.07 -52.03 -0.26 -10.92 16
10 C 0.14 2.59 3.20 -66.10 -0.21 2.38 16
11 H 0.10 1.91 7.55 -51.93 -0.39 1.52 16
12 C 0.13 2.86 7.01 -2.92 -0.02 2.84 16
13 N -0.60 -15.30 3.40 -169.86 -0.58 -15.88 16
14 C -0.22 -6.03 10.28 -15.06 -0.15 -6.19 16
15 H 0.08 2.14 7.83 -52.49 -0.41 1.72 16
16 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16
17 N -0.93 -26.34 10.09 55.49 0.56 -25.78 16
18 Si 0.92 22.02 29.55 -169.99 -5.02 16.99 16
19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
22 C 0.13 2.90 5.62 -2.53 -0.01 2.89 16
23 C 0.07 1.20 4.28 -24.58 -0.11 1.10 16
24 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16
25 O -0.56 -9.39 12.24 -35.23 -0.43 -9.82 16
26 H 0.22 0.95 7.80 -54.09 -0.42 0.52 16
27 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16
28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16
29 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16
30 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16
31 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16
32 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16
33 H 0.41 5.57 7.59 -40.82 -0.31 5.26 16
34 H 0.03 0.67 8.03 -51.93 -0.42 0.26 16
35 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16
36 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16
37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16
38 H 0.12 2.93 5.86 -51.93 -0.30 2.63 16
39 H 0.38 5.24 9.11 45.56 0.42 5.66 16
LS Contribution 337.30 15.07 5.08 5.08
Total: -1.00 -33.30 337.30 -6.09 -39.39
By element:
Atomic # 1 Polarization: 12.37 SS G_CDS: -4.78 Total: 7.59 kcal
Atomic # 6 Polarization: 8.23 SS G_CDS: -0.38 Total: 7.85 kcal
Atomic # 7 Polarization: -52.29 SS G_CDS: -0.28 Total: -52.57 kcal
Atomic # 8 Polarization: -23.64 SS G_CDS: -0.71 Total: -24.35 kcal
Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal
Total LS contribution 5.08 Total: 5.08 kcal
Total: -33.30 -6.09 -39.39 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001219611668.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.281 kcal
(2) G-P(sol) polarization free energy of solvation -33.300 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.581 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.090 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.671 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.35 seconds