Wall clock time and date at job start Tue Mar 31 2020 03:01:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17399 * 1
3 3 C 1.47204 * 179.97438 * 2 1
4 4 O 1.42899 * 109.46900 * 241.11638 * 3 2 1
5 5 C 1.42903 * 113.99940 * 179.97438 * 4 3 2
6 6 C 1.52996 * 109.47425 * 179.97438 * 5 4 3
7 7 C 1.50698 * 109.47270 * 179.97438 * 6 5 4
8 8 O 1.21281 * 119.99811 * 0.02562 * 7 6 5
9 9 N 1.34781 * 119.99963 * 179.97438 * 7 6 5
10 10 C 1.46497 * 119.99953 * 180.02562 * 9 7 6
11 11 H 1.08997 * 110.77693 * 31.76417 * 10 9 7
12 12 C 1.54325 * 110.72131 * 268.52482 * 10 9 7
13 13 N 1.47290 * 107.30599 * 219.45483 * 12 10 9
14 14 C 1.36938 * 125.79079 * 178.92205 * 13 12 10
15 15 H 1.07995 * 120.00281 * 0.02562 * 14 13 12
16 16 C 1.38810 * 119.99650 * 180.02562 * 14 13 12
17 17 N 1.31621 * 120.00025 * 0.02562 * 16 14 13
18 18 Si 1.86799 * 120.00113 * 180.02562 * 16 14 13
19 19 H 1.48506 * 109.47190 * 89.99819 * 18 16 14
20 20 H 1.48500 * 109.47472 * 210.00112 * 18 16 14
21 21 H 1.48507 * 109.46699 * 329.99987 * 18 16 14
22 22 C 1.47425 * 108.55742 * 358.92448 * 13 12 10
23 23 C 1.54908 * 104.92961 * 24.15407 * 22 13 12
24 24 H 1.08999 * 111.00647 * 204.85975 * 23 22 13
25 25 O 1.42902 * 111.00325 * 81.05136 * 23 22 13
26 26 H 4.38442 * 5.44376 * 179.97438 * 4 1 2
27 27 H 1.09003 * 109.47295 * 121.11513 * 3 2 1
28 28 H 1.08997 * 109.47040 * 1.11562 * 3 2 1
29 29 H 1.09005 * 109.47014 * 59.99837 * 5 4 3
30 30 H 1.09005 * 109.47043 * 299.99973 * 5 4 3
31 31 H 1.09005 * 109.47029 * 60.00004 * 6 5 4
32 32 H 1.09005 * 109.47117 * 300.00086 * 6 5 4
33 33 H 0.96996 * 119.99924 * 0.02562 * 9 7 6
34 34 H 1.09004 * 109.88239 * 338.86280 * 12 10 9
35 35 H 1.08995 * 109.88239 * 99.87201 * 12 10 9
36 36 H 0.97001 * 119.99611 * 180.02562 * 17 16 14
37 37 H 1.09002 * 110.36696 * 265.26054 * 22 13 12
38 38 H 1.08995 * 110.36608 * 143.04891 * 22 13 12
39 39 H 0.96700 * 114.00230 * 61.44969 * 25 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 8 3.1220 0.6517 1.1797
5 6 4.5466 0.7063 1.2788
6 6 4.9408 1.4211 2.5728
7 6 6.4430 1.4782 2.6776
8 8 7.1307 0.9951 1.8031
9 7 7.0224 2.0669 3.7426
10 6 8.4828 2.1229 3.8442
11 1 8.9369 2.1892 2.8556
12 6 9.0240 0.8989 4.6127
13 7 10.1201 1.3726 5.4750
14 6 10.8528 0.5998 6.3360
15 1 10.6448 -0.4562 6.4241
16 6 11.8629 1.1740 7.0954
17 7 12.1161 2.4612 6.9884
18 14 12.8630 0.1199 8.2693
19 1 14.0474 -0.4253 7.5585
20 1 13.3124 0.9476 9.4175
21 1 12.0242 -1.0007 8.7653
22 6 10.2971 2.8197 5.2565
23 6 8.9259 3.3150 4.7329
24 1 9.0386 4.2231 4.1407
25 8 8.0099 3.5200 5.8104
26 1 -1.0501 0.0000 -0.0003
27 1 3.0092 0.5319 -0.8798
28 1 3.0098 -1.0266 -0.0200
29 1 4.9495 1.2519 0.4255
30 1 4.9494 -0.3065 1.2856
31 1 4.5378 0.8759 3.4263
32 1 4.5379 2.4340 2.5656
33 1 6.4724 2.4536 4.4418
34 1 8.2325 0.4656 5.2243
35 1 9.3979 0.1551 3.9091
36 1 12.8222 2.8623 7.5189
37 1 11.0742 2.9989 4.5133
38 1 10.5475 3.3170 6.1935
39 1 8.2948 4.1899 6.4469
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001219611668.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:01:18
Heat of formation + Delta-G solvation = -69.804257 kcal
Electronic energy + Delta-G solvation = -21623.025346 eV
Core-core repulsion = 18146.498102 eV
Total energy + Delta-G solvation = -3476.527244 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 282.141 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.10846 -39.58565 -38.89866 -36.34091 -35.45412 -34.44490 -33.64535 -32.45415
-30.28100 -28.81251 -27.87057 -26.46243 -24.56040 -22.41651 -21.70547 -21.21380
-19.46058 -19.16017 -18.43533 -18.10039 -17.42239 -17.06251 -16.86829 -16.71953
-16.20095 -15.89569 -15.84468 -15.27375 -14.66932 -14.48634 -14.42302 -14.20285
-13.58187 -13.52769 -13.20842 -12.96095 -12.75581 -12.65492 -12.47483 -12.25282
-12.12384 -11.90275 -11.81862 -11.53768 -11.44385 -11.02161 -10.85729 -10.72757
-10.56516 -10.08347 -8.91416 -7.81487 -5.24864 1.43979 1.46532 1.47825
1.56512 1.59217 1.82960 2.09556 2.48300 2.96109 3.23830 3.29619
3.58019 3.66077 3.77163 3.87195 3.94155 4.07310 4.22058 4.31315
4.33295 4.45393 4.48608 4.55585 4.74120 4.80448 4.85184 4.86193
5.00101 5.03986 5.33766 5.45195 5.49386 5.70547 6.07172 6.24590
6.58316 6.60368 6.89413 7.07776 7.24261 7.72006 8.35117 9.20485
Molecular weight = 282.14amu
Principal moments of inertia in cm(-1)
A = 0.036319 B = 0.002798 C = 0.002706
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 770.754949 B =10006.103178 C =10344.138742
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C -0.239 4.239
3 C 0.166 3.834
4 O -0.399 6.399
5 C 0.081 3.919
6 C -0.128 4.128
7 C 0.515 3.485
8 O -0.585 6.585
9 N -0.697 5.697
10 C 0.153 3.847
11 H 0.098 0.902
12 C 0.129 3.871
13 N -0.617 5.617
14 C -0.240 4.240
15 H 0.074 0.926
16 C -0.062 4.062
17 N -0.945 5.945
18 Si 0.981 3.019
19 H -0.288 1.288
20 H -0.288 1.288
21 H -0.273 1.273
22 C 0.125 3.875
23 C 0.090 3.910
24 H 0.092 0.908
25 O -0.562 6.562
26 H 0.254 0.746
27 H 0.089 0.911
28 H 0.086 0.914
29 H 0.062 0.938
30 H 0.056 0.944
31 H 0.117 0.883
32 H 0.125 0.875
33 H 0.420 0.580
34 H 0.025 0.975
35 H 0.012 0.988
36 H 0.250 0.750
37 H 0.000 1.000
38 H 0.092 0.908
39 H 0.395 0.605
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.321 1.632 -10.234 21.925
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C -0.239 4.239
3 C 0.091 3.909
4 O -0.320 6.320
5 C 0.005 3.995
6 C -0.168 4.168
7 C 0.304 3.696
8 O -0.466 6.466
9 N -0.349 5.349
10 C 0.047 3.953
11 H 0.116 0.884
12 C 0.003 3.997
13 N -0.344 5.344
14 C -0.369 4.369
15 H 0.092 0.908
16 C -0.255 4.255
17 N -0.595 5.595
18 Si 0.809 3.191
19 H -0.215 1.215
20 H -0.214 1.214
21 H -0.198 1.198
22 C -0.001 4.001
23 C 0.029 3.971
24 H 0.110 0.890
25 O -0.371 6.371
26 H 0.270 0.730
27 H 0.107 0.893
28 H 0.103 0.897
29 H 0.080 0.920
30 H 0.074 0.926
31 H 0.135 0.865
32 H 0.143 0.857
33 H 0.258 0.742
34 H 0.043 0.957
35 H 0.030 0.970
36 H 0.060 0.940
37 H 0.018 0.982
38 H 0.110 0.890
39 H 0.246 0.754
Dipole moment (debyes) X Y Z Total
from point charges -19.127 0.926 -10.867 22.018
hybrid contribution 1.183 -0.190 1.000 1.561
sum -17.944 0.735 -9.867 20.491
Atomic orbital electron populations
1.25866 0.96808 0.98516 0.96624 1.23086 0.94854 1.02554 1.03419
1.19237 0.84633 0.98519 0.88493 1.87823 1.21778 1.79607 1.42765
1.22102 0.79548 1.00454 0.97445 1.21399 0.89650 1.05522 1.00203
1.20978 0.91291 0.76533 0.80844 1.90699 1.66503 1.48138 1.41244
1.45683 1.06416 1.58728 1.24034 1.21804 0.81259 0.94121 0.98154
0.88427 1.21716 0.90441 0.95520 0.92051 1.44627 1.37728 1.05845
1.46181 1.19388 1.10952 0.91889 1.14676 0.90824 1.25564 1.00254
0.97647 1.01994 1.69938 1.34164 1.10681 1.44730 0.85040 0.78361
0.77608 0.78051 1.21514 1.21431 1.19825 1.22531 0.92367 0.84803
1.00386 1.23276 0.89480 0.96222 0.88079 0.88994 1.86171 1.46829
1.65043 1.39039 0.72973 0.89348 0.89652 0.91993 0.92598 0.86464
0.85680 0.74238 0.95674 0.97040 0.94046 0.98218 0.89045 0.75414
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.31 19.25 74.32 1.43 -0.88 16
2 C -0.24 -4.44 13.73 31.13 0.43 -4.01 16
3 C 0.17 2.86 6.41 70.18 0.45 3.31 16
4 O -0.40 -8.39 10.30 -148.98 -1.53 -9.93 16
5 C 0.08 1.65 5.23 71.98 0.38 2.03 16
6 C -0.13 -2.47 6.07 29.85 0.18 -2.29 16
7 C 0.52 14.28 7.83 87.66 0.69 14.96 16
8 O -0.59 -20.80 15.63 -3.03 -0.05 -20.85 16
9 N -0.70 -19.78 5.07 -436.92 -2.22 -21.99 16
10 C 0.15 5.46 3.20 46.18 0.15 5.61 16
11 H 0.10 3.62 7.55 -2.39 -0.02 3.60 16
12 C 0.13 5.77 7.01 86.68 0.61 6.37 16
13 N -0.62 -32.19 3.40 -691.31 -2.35 -34.54 16
14 C -0.24 -13.68 10.28 84.03 0.86 -12.81 16
15 H 0.07 4.12 7.83 -2.91 -0.02 4.09 16
16 C -0.06 -3.48 5.49 84.86 0.47 -3.01 16
17 N -0.95 -54.43 10.09 21.65 0.22 -54.21 16
18 Si 0.98 45.52 29.55 68.60 2.03 47.54 16
19 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16
20 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16
21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16
22 C 0.12 5.83 5.62 86.85 0.49 6.32 16
23 C 0.09 3.10 4.28 31.98 0.14 3.24 16
24 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16
25 O -0.56 -17.53 12.24 -148.98 -1.82 -19.35 16
26 H 0.25 1.38 7.80 -4.42 -0.03 1.35 16
27 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16
28 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16
29 H 0.06 1.25 8.10 -2.38 -0.02 1.23 16
30 H 0.06 1.20 8.10 -2.38 -0.02 1.18 16
31 H 0.12 1.98 8.14 -2.38 -0.02 1.96 16
32 H 0.13 1.88 8.14 -2.38 -0.02 1.86 16
33 H 0.42 10.30 7.59 -92.71 -0.70 9.60 16
34 H 0.03 1.14 8.03 -2.38 -0.02 1.12 16
35 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16
36 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16
37 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16
38 H 0.09 4.73 5.86 -2.39 -0.01 4.72 16
39 H 0.40 10.02 9.11 -74.06 -0.67 9.35 16
Total: -1.00 -72.50 337.30 0.22 -72.28
By element:
Atomic # 1 Polarization: 22.53 SS G_CDS: -0.31 Total: 22.22 kcal
Atomic # 6 Polarization: 12.57 SS G_CDS: 6.26 Total: 18.83 kcal
Atomic # 7 Polarization: -106.40 SS G_CDS: -4.35 Total: -110.75 kcal
Atomic # 8 Polarization: -46.72 SS G_CDS: -3.41 Total: -50.13 kcal
Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal
Total: -72.50 0.22 -72.28 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001219611668.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.473 kcal
(2) G-P(sol) polarization free energy of solvation -72.497 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.024 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.220 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.277 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.804 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds