Wall clock time and date at job start Tue Mar 31 2020 02:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00519 * 2 1 4 4 H 1.48492 * 109.47294 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46978 * 300.00309 * 3 2 1 6 6 H 1.48506 * 109.47063 * 59.99837 * 3 2 1 7 7 C 1.37883 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00128 * 185.13439 * 7 2 1 9 9 C 1.50700 * 119.99775 * 5.13371 * 7 2 1 10 10 C 1.52995 * 115.55504 * 275.22530 * 9 7 2 11 11 N 1.46498 * 109.47249 * 269.58803 * 10 9 7 12 12 C 1.34784 * 119.99976 * 185.00441 * 11 10 9 13 13 O 1.21348 * 119.99778 * 5.05705 * 12 11 10 14 14 C 1.49446 * 119.99743 * 185.05652 * 12 11 10 15 15 O 1.21352 * 120.00299 * 355.15952 * 14 12 11 16 16 N 1.34780 * 119.99597 * 175.43974 * 14 12 11 17 17 C 1.46506 * 119.99766 * 180.02562 * 16 14 12 18 18 H 1.09006 * 110.45286 * 327.59937 * 17 16 14 19 19 C 1.54504 * 110.50712 * 204.99996 * 17 16 14 20 20 C 1.54487 * 104.05991 * 241.35105 * 19 17 16 21 21 O 1.44429 * 104.79980 * 23.97880 * 20 19 17 22 22 C 1.44417 * 105.27639 * 319.48879 * 21 20 19 23 23 C 1.53008 * 117.51687 * 60.93103 * 9 7 2 24 24 C 1.53001 * 59.99910 * 107.47722 * 23 9 7 25 25 H 0.97008 * 119.99564 * 4.99693 * 1 2 3 26 26 H 1.09003 * 109.47380 * 149.58160 * 10 9 7 27 27 H 1.09004 * 109.47018 * 29.58364 * 10 9 7 28 28 H 0.96996 * 120.00127 * 5.00552 * 11 10 9 29 29 H 0.96996 * 120.00432 * 359.97438 * 16 14 12 30 30 H 1.08997 * 110.51510 * 359.97438 * 19 17 16 31 31 H 1.09001 * 110.51202 * 122.57257 * 19 17 16 32 32 H 1.08998 * 110.37533 * 142.81026 * 20 19 17 33 33 H 1.08995 * 110.36914 * 265.14897 * 20 19 17 34 34 H 1.09000 * 110.37360 * 281.68365 * 22 21 20 35 35 H 1.09000 * 110.37211 * 159.34779 * 22 21 20 36 36 H 1.08997 * 117.49734 * 214.96659 * 23 9 7 37 37 H 1.08993 * 117.49466 * 359.97438 * 23 9 7 38 38 H 1.08995 * 117.49570 * 252.50978 * 24 23 9 39 39 H 1.09002 * 117.51709 * 107.48375 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0812 -1.1961 0.0842 9 6 1.2554 -2.4966 -0.1157 10 6 0.7122 -3.0649 1.1968 11 7 1.7140 -3.9488 1.7980 12 6 1.4163 -4.6446 2.9133 13 8 0.2915 -4.6106 3.3675 14 6 2.4715 -5.4577 3.5906 15 8 3.5717 -5.5628 3.0894 16 7 2.1994 -6.0791 4.7553 17 6 3.2340 -6.8758 5.4195 18 1 3.8907 -7.3381 4.6824 19 6 2.5916 -7.9522 6.3229 20 6 3.0920 -7.5991 7.7412 21 8 3.4095 -6.1915 7.6807 22 6 4.0464 -5.9999 6.3988 23 6 0.4261 -2.7247 -1.3811 24 6 1.7324 -3.4938 -1.1735 25 1 -0.4850 0.8370 -0.0732 26 1 -0.1988 -3.6297 0.9988 27 1 0.4908 -2.2472 1.8828 28 1 2.5915 -4.0333 1.3934 29 1 1.3190 -5.9982 5.1541 30 1 1.5044 -7.8912 6.2756 31 1 2.9307 -8.9465 6.0325 32 1 2.3077 -7.7800 8.4762 33 1 3.9823 -8.1788 7.9846 34 1 5.0831 -6.3343 6.4364 35 1 3.9953 -4.9521 6.1026 36 1 -0.5064 -3.2796 -1.2785 37 1 0.4220 -1.9324 -2.1296 38 1 2.5876 -3.2076 -1.7856 39 1 1.6595 -4.5548 -0.9342 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258143667.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:59 Heat of formation + Delta-G solvation = -113.396249 kcal Electronic energy + Delta-G solvation = -22006.188023 eV Core-core repulsion = 18527.770488 eV Total energy + Delta-G solvation = -3478.417535 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -41.84673 -40.49624 -39.38588 -38.51274 -36.00960 -34.90371 -33.95363 -32.02150 -29.83124 -28.71178 -27.41609 -25.29315 -23.68928 -23.01206 -22.07874 -21.34842 -21.23180 -19.66808 -18.21240 -18.02896 -17.36656 -17.24218 -16.89848 -16.56515 -16.47862 -16.27138 -15.76437 -15.45375 -15.02895 -14.85086 -14.37600 -13.90540 -13.68278 -13.41585 -13.10189 -13.00334 -12.84390 -12.82902 -12.81649 -12.53446 -12.36710 -12.05736 -11.97067 -11.53321 -11.02372 -10.91613 -10.77077 -10.49087 -10.25037 -10.11205 -10.04191 -8.13342 -6.26062 0.31857 1.30234 1.40709 1.44676 1.54201 2.11624 2.42277 2.63352 2.99495 3.16051 3.35192 3.48005 3.55748 3.77872 4.07447 4.13568 4.17615 4.29981 4.51675 4.53661 4.57116 4.69450 4.70129 4.84013 4.87917 4.89834 4.97315 4.99040 5.19880 5.24620 5.31110 5.57936 5.62727 5.75053 5.75496 5.96082 6.34630 6.39232 6.71103 6.81555 6.96183 7.44020 8.95018 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.024767 B = 0.003585 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.265214 B = 7808.237060 C = 8289.672042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.027 3.973 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.286 1.286 7 C -0.511 4.511 8 H 0.057 0.943 9 C 0.000 4.000 10 C 0.177 3.823 11 N -0.674 5.674 12 C 0.495 3.505 13 O -0.555 6.555 14 C 0.518 3.482 15 O -0.536 6.536 16 N -0.682 5.682 17 C 0.104 3.896 18 H 0.113 0.887 19 C -0.154 4.154 20 C 0.039 3.961 21 O -0.398 6.398 22 C 0.033 3.967 23 C -0.151 4.151 24 C -0.177 4.177 25 H 0.261 0.739 26 H 0.049 0.951 27 H 0.043 0.957 28 H 0.415 0.585 29 H 0.418 0.582 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.955 -16.803 11.456 21.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.174 4.174 3 Si 0.774 3.226 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.212 1.212 7 C -0.548 4.548 8 H 0.075 0.925 9 C -0.001 4.001 10 C 0.053 3.947 11 N -0.325 5.325 12 C 0.275 3.725 13 O -0.435 6.435 14 C 0.298 3.702 15 O -0.413 6.413 16 N -0.335 5.335 17 C 0.000 4.000 18 H 0.131 0.869 19 C -0.191 4.191 20 C -0.038 4.038 21 O -0.318 6.318 22 C -0.045 4.045 23 C -0.190 4.190 24 C -0.215 4.215 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.252 0.748 29 H 0.256 0.744 30 H 0.109 0.891 31 H 0.135 0.865 32 H 0.126 0.874 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.749 -16.548 11.652 21.039 hybrid contribution 0.061 1.269 -0.380 1.326 sum 5.810 -15.279 11.272 19.856 Atomic orbital electron populations 1.70115 1.06988 1.27505 1.49471 1.25656 0.95538 1.01910 0.94295 0.85661 0.79300 0.80205 0.77414 1.19133 1.20536 1.21215 1.20754 0.92763 0.90017 1.51294 0.92483 1.19078 1.00189 0.94459 0.86341 1.20912 0.88893 0.90111 0.94745 1.45950 1.18696 1.42247 1.25569 1.20414 0.88415 0.81454 0.82184 1.90716 1.22722 1.64648 1.65397 1.19976 0.87343 0.80446 0.82416 1.90745 1.23644 1.61532 1.65346 1.45875 1.17354 1.48908 1.21378 1.22705 0.90043 0.91666 0.95593 0.86926 1.23304 1.02558 0.99291 0.93989 1.23695 1.01530 0.81378 0.97158 1.89165 1.79584 1.26875 1.36156 1.23911 0.97214 1.00701 0.82652 1.22479 0.93565 1.01283 1.01628 1.22980 0.97834 0.96235 1.04424 0.93009 0.93316 0.93868 0.74808 0.74400 0.89125 0.86532 0.87443 0.90049 0.89114 0.90531 0.90655 0.91620 0.89558 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.50 12.91 21.45 0.28 -50.22 16 2 C 0.03 1.44 5.40 84.66 0.46 1.90 16 3 Si 0.95 42.66 29.54 68.60 2.03 44.69 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 7 C -0.51 -26.75 8.77 25.60 0.22 -26.52 16 8 H 0.06 2.98 7.82 -2.91 -0.02 2.95 16 9 C 0.00 0.01 1.46 -52.93 -0.08 -0.07 16 10 C 0.18 7.96 5.71 86.38 0.49 8.46 16 11 N -0.67 -25.93 5.40 -464.41 -2.51 -28.43 16 12 C 0.49 17.86 7.88 87.27 0.69 18.55 16 13 O -0.56 -22.28 16.46 -3.24 -0.05 -22.33 16 14 C 0.52 15.55 7.89 87.27 0.69 16.23 16 15 O -0.54 -17.57 16.13 -3.25 -0.05 -17.62 16 16 N -0.68 -15.58 5.08 -439.05 -2.23 -17.81 16 17 C 0.10 1.79 3.48 46.00 0.16 1.95 16 18 H 0.11 1.93 7.55 -2.38 -0.02 1.91 16 19 C -0.15 -1.62 6.85 31.61 0.22 -1.40 16 20 C 0.04 0.44 7.63 72.49 0.55 0.99 16 21 O -0.40 -7.99 11.65 -148.98 -1.74 -9.73 16 22 C 0.03 0.62 7.35 72.48 0.53 1.15 16 23 C -0.15 -6.75 9.37 30.60 0.29 -6.47 16 24 C -0.18 -7.01 9.50 30.60 0.29 -6.72 16 25 H 0.26 13.97 8.32 -92.70 -0.77 13.20 16 26 H 0.05 2.19 7.83 -2.39 -0.02 2.17 16 27 H 0.04 2.23 8.04 -2.38 -0.02 2.21 16 28 H 0.42 15.19 7.70 -92.71 -0.71 14.47 16 29 H 0.42 9.03 7.86 -92.71 -0.73 8.30 16 30 H 0.09 0.93 7.70 -2.39 -0.02 0.91 16 31 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.08 1.76 8.06 -2.39 -0.02 1.74 16 36 H 0.07 3.17 8.03 -2.39 -0.02 3.15 16 37 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 38 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 39 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -63.87 335.69 -0.12 -63.99 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: -0.36 Total: 29.40 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 4.51 Total: 8.06 kcal Atomic # 7 Polarization: -92.00 SS G_CDS: -4.46 Total: -96.46 kcal Atomic # 8 Polarization: -47.84 SS G_CDS: -1.84 Total: -49.68 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -63.87 -0.12 -63.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258143667.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.406 kcal (2) G-P(sol) polarization free energy of solvation -63.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds