Wall clock time and date at job start Tue Mar 31 2020 02:11:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86791 * 119.99929 * 2 1
4 4 H 1.48502 * 109.47149 * 179.97438 * 3 2 1
5 5 H 1.48494 * 109.47504 * 299.99817 * 3 2 1
6 6 H 1.48501 * 109.47560 * 60.00337 * 3 2 1
7 7 C 1.37878 * 119.99699 * 179.97438 * 2 1 3
8 8 H 1.07999 * 119.99843 * 180.02562 * 7 2 1
9 9 C 1.50699 * 120.00321 * 359.97438 * 7 2 1
10 10 C 1.50700 * 109.47065 * 180.02562 * 9 7 2
11 11 O 1.21279 * 120.00251 * 0.02562 * 10 9 7
12 12 N 1.34783 * 119.99870 * 180.02562 * 10 9 7
13 13 C 1.47393 * 125.70872 * 179.97438 * 12 10 9
14 14 C 1.54681 * 105.01487 * 204.98625 * 13 12 10
15 15 H 1.08998 * 113.96428 * 86.01669 * 14 13 12
16 16 C 1.54368 * 108.68744 * 215.30932 * 14 13 12
17 17 C 1.54132 * 104.67563 * 88.47975 * 16 14 13
18 18 H 1.09000 * 110.15887 * 116.31742 * 17 16 14
19 19 C 1.52996 * 109.68145 * 237.35482 * 17 16 14
20 20 C 1.50702 * 109.46878 * 184.26768 * 19 17 16
21 21 N 1.34782 * 120.00153 * 180.02562 * 20 19 17
22 22 O 1.21282 * 119.99857 * 359.97438 * 20 19 17
23 23 O 1.43497 * 107.38081 * 356.70113 * 17 16 14
24 24 C 1.43948 * 107.78048 * 26.17564 * 23 17 16
25 25 H 1.08997 * 113.78791 * 86.00226 * 24 23 17
26 26 C 1.47066 * 125.70735 * 359.97438 * 12 10 9
27 27 H 0.96996 * 119.99738 * 359.97438 * 1 2 3
28 28 H 1.08998 * 109.46675 * 60.00438 * 9 7 2
29 29 H 1.08999 * 109.47234 * 300.00151 * 9 7 2
30 30 H 1.08999 * 110.33405 * 323.86968 * 13 12 10
31 31 H 1.09007 * 110.33042 * 86.09939 * 13 12 10
32 32 H 1.09007 * 110.38707 * 207.03561 * 16 14 13
33 33 H 1.08993 * 110.39167 * 329.43076 * 16 14 13
34 34 H 1.09007 * 109.47401 * 304.26445 * 19 17 16
35 35 H 1.09003 * 109.47777 * 64.26860 * 19 17 16
36 36 H 0.97004 * 119.99610 * 359.97438 * 21 20 19
37 37 H 0.97000 * 120.00011 * 179.97438 * 21 20 19
38 38 H 1.09002 * 109.84101 * 297.59418 * 26 12 10
39 39 H 1.09000 * 109.84226 * 58.49898 * 26 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.7091 1.3463 0.0006
5 1 1.8905 2.3964 -1.2124
6 1 1.8905 2.3964 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2510 -2.4992 0.0017
10 6 2.2303 -3.6446 0.0027
11 8 3.4227 -3.4230 0.0030
12 7 1.7810 -4.9154 0.0033
13 6 2.6226 -6.1254 0.0038
14 6 1.7397 -7.2279 -0.6267
15 1 1.7800 -7.2586 -1.7155
16 6 2.0525 -8.5701 0.0688
17 6 1.0953 -8.6167 1.2760
18 1 0.3981 -9.4480 1.1706
19 6 1.9012 -8.7748 2.5668
20 6 0.9580 -8.9251 3.7326
21 7 1.4466 -9.0785 4.9793
22 8 -0.2407 -8.9070 3.5490
23 8 0.3747 -7.3761 1.2999
24 6 0.3317 -6.8667 -0.0458
25 1 -0.4960 -7.2573 -0.6376
26 6 0.3690 -5.3265 0.0036
27 1 -0.4849 0.8400 0.0004
28 1 0.6241 -2.5575 -0.8880
29 1 0.6247 -2.5563 0.8919
30 1 3.5166 -5.9653 -0.5990
31 1 2.8961 -6.3961 1.0237
32 1 1.8498 -9.4030 -0.6046
33 1 3.0903 -8.5928 0.4010
34 1 2.5333 -9.6599 2.4945
35 1 2.5254 -7.8937 2.7158
36 1 2.4053 -9.0926 5.1261
37 1 0.8395 -9.1749 5.7297
38 1 -0.1189 -4.9736 0.9122
39 1 -0.1361 -4.9160 -0.8707
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001269024523.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:11:17
Heat of formation + Delta-G solvation = -119.983307 kcal
Electronic energy + Delta-G solvation = -22563.282692 eV
Core-core repulsion = 19084.579522 eV
Total energy + Delta-G solvation = -3478.703171 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 282.141 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-40.80434 -39.38111 -38.14234 -35.36421 -33.84396 -32.97284 -32.79039 -31.29761
-28.96921 -28.48871 -26.64543 -23.89352 -22.47623 -21.73002 -20.75570 -20.34937
-18.65133 -17.69003 -17.11689 -16.56912 -16.41774 -16.15519 -15.54720 -15.00025
-14.82374 -14.67080 -14.45391 -14.04954 -13.75070 -13.13589 -12.90217 -12.75968
-12.28560 -12.25119 -12.08826 -11.90343 -11.49303 -11.38002 -11.12471 -11.01295
-10.71169 -10.62806 -10.55747 -10.05596 -9.92484 -9.86860 -9.71447 -9.20399
-8.62859 -8.40838 -8.05188 -6.02429 -4.02000 2.52912 3.31356 3.35569
3.42264 3.49876 3.58788 3.65986 3.71174 4.22496 4.39444 4.51210
4.65626 4.66878 4.77658 4.94728 5.03537 5.17264 5.27325 5.31023
5.35615 5.45833 5.50478 5.65620 5.81786 5.88235 5.95058 6.03197
6.15200 6.21146 6.58081 6.87749 6.98781 7.13023 7.25092 7.37751
7.99688 8.06918 8.12093 8.42361 9.08754 9.22555 9.62792 11.10033
Molecular weight = 282.14amu
Principal moments of inertia in cm(-1)
A = 0.024168 B = 0.003812 C = 0.003642
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1158.255077 B = 7344.072211 C = 7685.420910
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.900 5.900
2 C 0.054 3.946
3 Si 0.900 3.100
4 H -0.271 1.271
5 H -0.284 1.284
6 H -0.284 1.284
7 C -0.508 4.508
8 H 0.075 0.925
9 C 0.010 3.990
10 C 0.532 3.468
11 O -0.545 6.545
12 N -0.631 5.631
13 C 0.116 3.884
14 C -0.134 4.134
15 H 0.109 0.891
16 C -0.143 4.143
17 C 0.095 3.905
18 H 0.077 0.923
19 C -0.146 4.146
20 C 0.517 3.483
21 N -0.862 5.862
22 O -0.528 6.528
23 O -0.347 6.347
24 C 0.066 3.934
25 H 0.101 0.899
26 C 0.110 3.890
27 H 0.261 0.739
28 H 0.047 0.953
29 H 0.048 0.952
30 H 0.073 0.927
31 H 0.060 0.940
32 H 0.080 0.920
33 H 0.083 0.917
34 H 0.105 0.895
35 H 0.103 0.897
36 H 0.400 0.600
37 H 0.400 0.600
38 H 0.079 0.921
39 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.713 -22.750 3.485 23.175
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.540 5.540
2 C -0.146 4.146
3 Si 0.728 3.272
4 H -0.195 1.195
5 H -0.210 1.210
6 H -0.210 1.210
7 C -0.546 4.546
8 H 0.093 0.907
9 C -0.029 4.029
10 C 0.325 3.675
11 O -0.421 6.421
12 N -0.369 5.369
13 C -0.008 4.008
14 C -0.153 4.153
15 H 0.128 0.872
16 C -0.181 4.181
17 C 0.036 3.964
18 H 0.094 0.906
19 C -0.186 4.186
20 C 0.302 3.698
21 N -0.426 5.426
22 O -0.403 6.403
23 O -0.265 6.265
24 C 0.007 3.993
25 H 0.119 0.881
26 C -0.014 4.014
27 H 0.070 0.930
28 H 0.065 0.935
29 H 0.066 0.934
30 H 0.092 0.908
31 H 0.078 0.922
32 H 0.099 0.901
33 H 0.102 0.898
34 H 0.123 0.877
35 H 0.122 0.878
36 H 0.228 0.772
37 H 0.230 0.770
38 H 0.098 0.902
39 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges 2.415 -22.240 3.363 22.622
hybrid contribution 0.649 0.682 0.353 1.006
sum 3.064 -21.557 3.716 22.089
Atomic orbital electron populations
1.69975 1.06029 1.26772 1.51210 1.25008 0.94907 0.99454 0.95241
0.86381 0.80315 0.83017 0.77457 1.19494 1.21002 1.21013 1.21222
0.94279 0.89135 1.50010 0.90673 1.19231 0.94038 0.90196 0.99419
1.21818 0.90859 0.81815 0.73010 1.90535 1.18047 1.83682 1.49870
1.48827 1.06249 1.05413 1.76412 1.22073 0.94510 0.84354 0.99830
1.23836 0.96074 0.94489 1.00892 0.87245 1.22922 1.00713 0.97530
0.96928 1.22417 0.92320 0.89012 0.92638 0.90563 1.21990 0.98527
1.04813 0.93226 1.20582 0.89575 0.75160 0.84499 1.43919 1.11702
1.77881 1.09126 1.90784 1.16058 1.48548 1.84952 1.88906 1.75473
1.36218 1.25948 1.24094 0.96769 0.94130 0.84262 0.88119 1.21902
0.84136 0.92116 1.03235 0.92966 0.93477 0.93428 0.90812 0.92166
0.90114 0.89832 0.87688 0.87846 0.77238 0.76991 0.90248 0.90181
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16
2 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16
3 Si 0.90 22.46 29.54 -169.99 -5.02 17.44 16
4 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16
5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16
6 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16
7 C -0.51 -15.12 8.92 -34.44 -0.31 -15.43 16
8 H 0.08 2.33 6.75 -52.49 -0.35 1.98 16
9 C 0.01 0.27 4.66 -29.04 -0.14 0.14 16
10 C 0.53 12.81 7.84 -10.98 -0.09 12.72 16
11 O -0.55 -14.75 15.71 5.56 0.09 -14.67 16
12 N -0.63 -11.86 3.33 -170.77 -0.57 -12.43 16
13 C 0.12 1.72 5.99 -2.67 -0.02 1.70 16
14 C -0.13 -1.46 4.38 -87.12 -0.38 -1.84 16
15 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16
16 C -0.14 -1.16 5.89 -25.42 -0.15 -1.31 16
17 C 0.09 0.98 2.90 -26.14 -0.08 0.90 16
18 H 0.08 0.80 7.95 -51.93 -0.41 0.38 16
19 C -0.15 -1.22 5.18 -27.88 -0.14 -1.37 16
20 C 0.52 5.61 8.00 -10.98 -0.09 5.52 16
21 N -0.86 -5.96 8.87 31.22 0.28 -5.68 16
22 O -0.53 -8.30 16.33 -6.79 -0.11 -8.41 16
23 O -0.35 -4.91 9.82 -47.58 -0.47 -5.38 16
24 C 0.07 0.82 4.54 -24.23 -0.11 0.71 16
25 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16
26 C 0.11 1.73 6.14 -3.14 -0.02 1.72 16
27 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16
28 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16
29 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16
30 H 0.07 1.14 8.02 -51.93 -0.42 0.73 16
31 H 0.06 0.87 7.33 -51.93 -0.38 0.49 16
32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16
33 H 0.08 0.58 7.39 -51.93 -0.38 0.20 16
34 H 0.10 0.50 8.14 -51.92 -0.42 0.08 16
35 H 0.10 0.89 7.73 -51.93 -0.40 0.48 16
36 H 0.40 1.49 8.83 -40.82 -0.36 1.13 16
37 H 0.40 2.54 8.93 -40.82 -0.36 2.18 16
38 H 0.08 1.37 8.08 -51.93 -0.42 0.95 16
39 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16
LS Contribution 324.42 15.07 4.89 4.89
Total: -1.00 -38.07 324.42 -7.38 -45.44
By element:
Atomic # 1 Polarization: 5.59 SS G_CDS: -5.59 Total: 0.01 kcal
Atomic # 6 Polarization: 6.56 SS G_CDS: -1.61 Total: 4.95 kcal
Atomic # 7 Polarization: -44.71 SS G_CDS: 0.45 Total: -44.27 kcal
Atomic # 8 Polarization: -27.97 SS G_CDS: -0.49 Total: -28.46 kcal
Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal
Total LS contribution 4.89 Total: 4.89 kcal
Total: -38.07 -7.38 -45.44 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001269024523.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -74.539 kcal
(2) G-P(sol) polarization free energy of solvation -38.068 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.607 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.444 kcal
(6) G-S(sol) free energy of system = (1) + (5) -119.983 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds