Wall clock time and date at job start Tue Mar 31 2020 02:11:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86791 * 119.99929 * 2 1
4 4 H 1.48502 * 109.47149 * 179.97438 * 3 2 1
5 5 H 1.48494 * 109.47504 * 299.99817 * 3 2 1
6 6 H 1.48501 * 109.47560 * 60.00337 * 3 2 1
7 7 C 1.37878 * 119.99699 * 179.97438 * 2 1 3
8 8 H 1.07999 * 119.99843 * 180.02562 * 7 2 1
9 9 C 1.50699 * 120.00321 * 359.97438 * 7 2 1
10 10 C 1.50700 * 109.47065 * 180.02562 * 9 7 2
11 11 O 1.21279 * 120.00251 * 0.02562 * 10 9 7
12 12 N 1.34783 * 119.99870 * 180.02562 * 10 9 7
13 13 C 1.47393 * 125.70872 * 179.97438 * 12 10 9
14 14 C 1.54681 * 105.01487 * 204.98625 * 13 12 10
15 15 H 1.08998 * 113.96428 * 86.01669 * 14 13 12
16 16 C 1.54368 * 108.68744 * 215.30932 * 14 13 12
17 17 C 1.54132 * 104.67563 * 88.47975 * 16 14 13
18 18 H 1.09000 * 110.15887 * 116.31742 * 17 16 14
19 19 C 1.52996 * 109.68145 * 237.35482 * 17 16 14
20 20 C 1.50702 * 109.46878 * 184.26768 * 19 17 16
21 21 N 1.34782 * 120.00153 * 180.02562 * 20 19 17
22 22 O 1.21282 * 119.99857 * 359.97438 * 20 19 17
23 23 O 1.43497 * 107.38081 * 356.70113 * 17 16 14
24 24 C 1.43948 * 107.78048 * 26.17564 * 23 17 16
25 25 H 1.08997 * 113.78791 * 86.00226 * 24 23 17
26 26 C 1.47066 * 125.70735 * 359.97438 * 12 10 9
27 27 H 0.96996 * 119.99738 * 359.97438 * 1 2 3
28 28 H 1.08998 * 109.46675 * 60.00438 * 9 7 2
29 29 H 1.08999 * 109.47234 * 300.00151 * 9 7 2
30 30 H 1.08999 * 110.33405 * 323.86968 * 13 12 10
31 31 H 1.09007 * 110.33042 * 86.09939 * 13 12 10
32 32 H 1.09007 * 110.38707 * 207.03561 * 16 14 13
33 33 H 1.08993 * 110.39167 * 329.43076 * 16 14 13
34 34 H 1.09007 * 109.47401 * 304.26445 * 19 17 16
35 35 H 1.09003 * 109.47777 * 64.26860 * 19 17 16
36 36 H 0.97004 * 119.99610 * 359.97438 * 21 20 19
37 37 H 0.97000 * 120.00011 * 179.97438 * 21 20 19
38 38 H 1.09002 * 109.84101 * 297.59418 * 26 12 10
39 39 H 1.09000 * 109.84226 * 58.49898 * 26 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.7091 1.3463 0.0006
5 1 1.8905 2.3964 -1.2124
6 1 1.8905 2.3964 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2510 -2.4992 0.0017
10 6 2.2303 -3.6446 0.0027
11 8 3.4227 -3.4230 0.0030
12 7 1.7810 -4.9154 0.0033
13 6 2.6226 -6.1254 0.0038
14 6 1.7397 -7.2279 -0.6267
15 1 1.7800 -7.2586 -1.7155
16 6 2.0525 -8.5701 0.0688
17 6 1.0953 -8.6167 1.2760
18 1 0.3981 -9.4480 1.1706
19 6 1.9012 -8.7748 2.5668
20 6 0.9580 -8.9251 3.7326
21 7 1.4466 -9.0785 4.9793
22 8 -0.2407 -8.9070 3.5490
23 8 0.3747 -7.3761 1.2999
24 6 0.3317 -6.8667 -0.0458
25 1 -0.4960 -7.2573 -0.6376
26 6 0.3690 -5.3265 0.0036
27 1 -0.4849 0.8400 0.0004
28 1 0.6241 -2.5575 -0.8880
29 1 0.6247 -2.5563 0.8919
30 1 3.5166 -5.9653 -0.5990
31 1 2.8961 -6.3961 1.0237
32 1 1.8498 -9.4030 -0.6046
33 1 3.0903 -8.5928 0.4010
34 1 2.5333 -9.6599 2.4945
35 1 2.5254 -7.8937 2.7158
36 1 2.4053 -9.0926 5.1261
37 1 0.8395 -9.1749 5.7297
38 1 -0.1189 -4.9736 0.9122
39 1 -0.1361 -4.9160 -0.8707
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001269024523.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:11:15
Heat of formation + Delta-G solvation = -150.364564 kcal
Electronic energy + Delta-G solvation = -22564.600123 eV
Core-core repulsion = 19084.579522 eV
Total energy + Delta-G solvation = -3480.020601 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 282.141 amu
Computer time = 1.42 seconds
Orbital eigenvalues (eV)
-41.84782 -40.42697 -39.67711 -36.75505 -35.14793 -34.62566 -33.71798 -32.47433
-30.90635 -29.65035 -27.85137 -25.67639 -23.96722 -22.60640 -21.66277 -21.19745
-20.24303 -18.61500 -18.44809 -18.02762 -17.56194 -17.27759 -17.01308 -16.70528
-16.30491 -15.89916 -15.55305 -15.45170 -14.67803 -14.43272 -14.31850 -14.19716
-13.84346 -13.48370 -13.25492 -13.19772 -12.87449 -12.80181 -12.62640 -12.35121
-12.18266 -12.06157 -11.94303 -11.49307 -11.42912 -10.92505 -10.79490 -10.65451
-10.59286 -10.41146 -9.61889 -8.27477 -6.36127 1.38606 1.38939 1.54431
1.73664 1.79367 2.10403 2.42685 2.63786 2.77145 3.07229 3.36176
3.42805 3.82627 3.91662 4.06432 4.10917 4.15757 4.25040 4.35817
4.43271 4.48936 4.66620 4.68171 4.73289 4.80477 4.95838 5.00748
5.04290 5.11846 5.21086 5.24443 5.44127 5.71522 5.94862 6.01933
6.12315 6.52657 6.54058 6.78047 7.29526 7.39790 7.43067 8.85198
Molecular weight = 282.14amu
Principal moments of inertia in cm(-1)
A = 0.024168 B = 0.003812 C = 0.003642
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1158.255077 B = 7344.072211 C = 7685.420910
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.925 5.925
2 C 0.009 3.991
3 Si 0.969 3.031
4 H -0.273 1.273
5 H -0.269 1.269
6 H -0.272 1.272
7 C -0.539 4.539
8 H 0.056 0.944
9 C 0.016 3.984
10 C 0.531 3.469
11 O -0.584 6.584
12 N -0.625 5.625
13 C 0.108 3.892
14 C -0.118 4.118
15 H 0.131 0.869
16 C -0.129 4.129
17 C 0.085 3.915
18 H 0.075 0.925
19 C -0.142 4.142
20 C 0.508 3.492
21 N -0.845 5.845
22 O -0.587 6.587
23 O -0.381 6.381
24 C 0.071 3.929
25 H 0.129 0.871
26 C 0.101 3.899
27 H 0.268 0.732
28 H 0.040 0.960
29 H 0.032 0.968
30 H 0.068 0.932
31 H 0.065 0.935
32 H 0.111 0.889
33 H 0.102 0.898
34 H 0.149 0.851
35 H 0.103 0.897
36 H 0.417 0.583
37 H 0.403 0.597
38 H 0.057 0.943
39 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.755 -24.464 3.029 24.935
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.565 5.565
2 C -0.189 4.189
3 Si 0.793 3.207
4 H -0.198 1.198
5 H -0.195 1.195
6 H -0.197 1.197
7 C -0.577 4.577
8 H 0.074 0.926
9 C -0.023 4.023
10 C 0.323 3.677
11 O -0.464 6.464
12 N -0.360 5.360
13 C -0.014 4.014
14 C -0.137 4.137
15 H 0.149 0.851
16 C -0.166 4.166
17 C 0.027 3.973
18 H 0.092 0.908
19 C -0.182 4.182
20 C 0.294 3.706
21 N -0.409 5.409
22 O -0.467 6.467
23 O -0.301 6.301
24 C 0.013 3.987
25 H 0.146 0.854
26 C -0.022 4.022
27 H 0.077 0.923
28 H 0.058 0.942
29 H 0.050 0.950
30 H 0.086 0.914
31 H 0.083 0.917
32 H 0.130 0.870
33 H 0.121 0.879
34 H 0.167 0.833
35 H 0.121 0.879
36 H 0.248 0.752
37 H 0.234 0.766
38 H 0.076 0.924
39 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges 3.467 -24.018 2.936 24.444
hybrid contribution 0.278 1.147 0.578 1.314
sum 3.746 -22.871 3.514 23.440
Atomic orbital electron populations
1.70056 1.07284 1.28140 1.51021 1.25853 0.95879 1.02939 0.94271
0.85343 0.78582 0.78464 0.78327 1.19792 1.19458 1.19724 1.21404
0.93698 0.91148 1.51450 0.92565 1.19008 0.94102 0.90958 0.98217
1.21187 0.89660 0.83285 0.73577 1.90497 1.18974 1.84760 1.52158
1.48669 1.08467 1.05029 1.73844 1.22413 0.94661 0.83720 1.00643
1.23857 0.93485 0.94405 1.01977 0.85142 1.22923 1.01142 0.96509
0.96057 1.22668 0.92755 0.87357 0.94513 0.90757 1.22081 0.98016
1.06694 0.91359 1.21121 0.89195 0.74299 0.85986 1.43813 1.12903
1.75963 1.08231 1.90759 1.18463 1.51561 1.85913 1.88893 1.76474
1.38025 1.26679 1.24162 0.98844 0.91094 0.84555 0.85365 1.22124
0.82190 0.95402 1.02473 0.92313 0.94207 0.95028 0.91373 0.91660
0.87016 0.87926 0.83349 0.87910 0.75176 0.76650 0.92446 0.89533
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -55.95 13.29 21.45 0.28 -55.66 16
2 C 0.01 0.54 5.46 84.65 0.46 1.00 16
3 Si 0.97 46.41 29.54 68.60 2.03 48.44 16
4 H -0.27 -13.12 7.11 99.48 0.71 -12.42 16
5 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16
6 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16
7 C -0.54 -33.17 8.92 25.60 0.23 -32.95 16
8 H 0.06 3.62 6.75 -2.91 -0.02 3.60 16
9 C 0.02 0.91 4.66 29.10 0.14 1.05 16
10 C 0.53 26.50 7.84 87.66 0.69 27.19 16
11 O -0.58 -32.66 15.71 -3.03 -0.05 -32.71 16
12 N -0.63 -23.78 3.33 -812.57 -2.70 -26.48 16
13 C 0.11 3.05 5.99 86.78 0.52 3.57 16
14 C -0.12 -2.22 4.38 -8.52 -0.04 -2.25 16
15 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16
16 C -0.13 -1.54 5.89 31.44 0.19 -1.35 16
17 C 0.08 1.53 2.90 30.98 0.09 1.62 16
18 H 0.07 1.38 7.95 -2.39 -0.02 1.36 16
19 C -0.14 -2.00 5.18 29.85 0.15 -1.85 16
20 C 0.51 10.41 8.00 87.66 0.70 11.12 16
21 N -0.85 -10.36 8.87 -173.52 -1.54 -11.90 16
22 O -0.59 -18.54 16.33 8.77 0.14 -18.40 16
23 O -0.38 -10.41 9.82 -137.18 -1.35 -11.76 16
24 C 0.07 1.66 4.54 32.21 0.15 1.81 16
25 H 0.13 2.32 8.14 -2.39 -0.02 2.31 16
26 C 0.10 3.23 6.14 86.66 0.53 3.76 16
27 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16
28 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16
29 H 0.03 1.82 8.14 -2.39 -0.02 1.80 16
30 H 0.07 2.03 8.02 -2.39 -0.02 2.01 16
31 H 0.07 1.80 7.33 -2.38 -0.02 1.78 16
32 H 0.11 0.76 8.14 -2.38 -0.02 0.74 16
33 H 0.10 0.91 7.39 -2.39 -0.02 0.89 16
34 H 0.15 0.75 8.14 -2.38 -0.02 0.73 16
35 H 0.10 1.50 7.73 -2.39 -0.02 1.49 16
36 H 0.42 2.13 8.83 -92.71 -0.82 1.31 16
37 H 0.40 4.70 8.93 -92.71 -0.83 3.88 16
38 H 0.06 2.08 8.08 -2.39 -0.02 2.06 16
39 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16
Total: -1.00 -86.48 324.42 0.06 -86.42
By element:
Atomic # 1 Polarization: 9.90 SS G_CDS: -0.56 Total: 9.34 kcal
Atomic # 6 Polarization: 8.91 SS G_CDS: 3.81 Total: 12.71 kcal
Atomic # 7 Polarization: -90.09 SS G_CDS: -3.96 Total: -94.04 kcal
Atomic # 8 Polarization: -61.61 SS G_CDS: -1.25 Total: -62.86 kcal
Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal
Total: -86.48 0.06 -86.42 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001269024523.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -63.941 kcal
(2) G-P(sol) polarization free energy of solvation -86.483 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.424 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.060 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.424 kcal
(6) G-S(sol) free energy of system = (1) + (5) -150.365 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.42 seconds