Wall clock time and date at job start Tue Mar 31 2020 02:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 11 11 O 1.21283 * 120.00011 * 0.02562 * 10 9 7 12 12 N 1.34775 * 120.00072 * 180.02562 * 10 9 7 13 13 C 1.47194 * 135.98994 * 359.63876 * 12 10 9 14 14 C 1.53136 * 87.72261 * 153.46304 * 13 12 10 15 15 C 1.47171 * 135.99095 * 179.97438 * 12 10 9 16 16 C 1.52620 * 114.10796 * 139.67481 * 14 13 12 17 17 C 1.53312 * 108.88493 * 185.74394 * 16 14 13 18 18 O 1.42897 * 109.30196 * 304.98807 * 17 16 14 19 19 C 1.42912 * 114.39439 * 63.11806 * 18 17 16 20 20 C 1.52626 * 114.45576 * 272.01361 * 14 13 12 21 21 H 1.09006 * 109.57066 * 54.48506 * 20 14 13 22 22 C 1.50696 * 109.57018 * 294.24364 * 20 14 13 23 23 N 1.34779 * 120.00449 * 179.97438 * 22 20 14 24 24 O 1.21288 * 120.00000 * 0.02562 * 22 20 14 25 25 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 27 27 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 28 28 H 1.09009 * 113.49396 * 268.14467 * 13 12 10 29 29 H 1.09001 * 113.49797 * 38.66720 * 13 12 10 30 30 H 1.08997 * 113.49539 * 321.33303 * 15 12 10 31 31 H 1.08997 * 113.48857 * 91.78640 * 15 12 10 32 32 H 1.09000 * 109.57012 * 305.56452 * 16 14 13 33 33 H 1.08998 * 109.56657 * 65.92466 * 16 14 13 34 34 H 1.08998 * 109.49609 * 185.04199 * 17 16 14 35 35 H 1.08996 * 109.52373 * 64.95292 * 17 16 14 36 36 H 1.08997 * 109.50030 * 176.93704 * 19 18 17 37 37 H 1.08994 * 109.52753 * 56.84500 * 19 18 17 38 38 H 0.97004 * 119.99633 * 359.97438 * 23 22 20 39 39 H 0.96996 * 120.00121 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2305 -3.6445 0.0104 11 8 3.4229 -3.4228 0.0097 12 7 1.7813 -4.9152 0.0156 13 6 0.4643 -5.5724 0.0245 14 6 1.1261 -6.7715 -0.6605 15 6 2.3926 -6.2539 0.0209 16 6 0.6472 -8.1261 -0.1455 17 6 1.4826 -9.2306 -0.8032 18 8 1.4122 -9.0936 -2.2238 19 6 1.9648 -7.8756 -2.7275 20 6 1.1579 -6.6905 -2.1842 21 1 1.6277 -5.7558 -2.4904 22 6 -0.2485 -6.7485 -2.7223 23 7 -0.4645 -6.6921 -4.0515 24 8 -1.1863 -6.8449 -1.9592 25 1 -0.4850 0.8400 0.0004 26 1 0.6245 -2.5529 0.8956 27 1 0.6244 -2.5609 -0.8844 28 1 0.0956 -5.7933 1.0263 29 1 -0.2767 -5.0694 -0.5969 30 1 3.2829 -6.3276 -0.6036 31 1 2.5449 -6.6580 1.0216 32 1 0.7711 -8.1699 0.9365 33 1 -0.4038 -8.2626 -0.4003 34 1 1.0911 -10.2052 -0.5118 35 1 2.5200 -9.1438 -0.4802 36 1 1.9191 -7.8783 -3.8165 37 1 3.0027 -7.7865 -2.4070 38 1 0.2855 -6.6139 -4.6618 39 1 -1.3698 -6.7291 -4.3977 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269024725.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:12 Heat of formation + Delta-G solvation = -85.854823 kcal Electronic energy + Delta-G solvation = -23195.762496 eV Core-core repulsion = 19718.539248 eV Total energy + Delta-G solvation = -3477.223249 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.49434 -38.99740 -38.12012 -36.95190 -33.87194 -32.92563 -32.19344 -31.40611 -29.25339 -27.10851 -26.04769 -24.64249 -23.52416 -22.68665 -21.30391 -19.02480 -18.38113 -17.11185 -16.86839 -16.55537 -16.38168 -15.93002 -15.81853 -15.35661 -15.18624 -14.96864 -14.29658 -14.08657 -13.82524 -13.71455 -12.81625 -12.56066 -12.46651 -12.33315 -12.15306 -12.04565 -11.67366 -11.19973 -10.95648 -10.75654 -10.65993 -10.64623 -10.56036 -10.01899 -9.95137 -9.70746 -9.46111 -9.24474 -8.65848 -8.44813 -8.15630 -6.05635 -4.05923 2.62669 3.32822 3.34194 3.38530 3.41417 3.50728 3.64684 3.69334 4.23312 4.32554 4.47071 4.61757 4.72393 4.85165 4.96829 5.16336 5.26213 5.32078 5.33187 5.34298 5.47776 5.52507 5.61309 5.63930 5.82054 5.85279 5.97851 6.13003 6.24038 6.63843 6.71878 6.92578 7.21844 7.24666 7.33342 7.96038 8.13932 8.23012 8.46220 9.04896 9.19093 9.59090 11.06654 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.025634 B = 0.004469 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.035469 B = 6264.461014 C = 6688.009675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.901 3.099 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.075 0.925 9 C 0.014 3.986 10 C 0.544 3.456 11 O -0.544 6.544 12 N -0.659 5.659 13 C 0.123 3.877 14 C -0.080 4.080 15 C 0.108 3.892 16 C -0.140 4.140 17 C 0.062 3.938 18 O -0.379 6.379 19 C 0.073 3.927 20 C -0.121 4.121 21 H 0.114 0.886 22 C 0.536 3.464 23 N -0.856 5.856 24 O -0.532 6.532 25 H 0.261 0.739 26 H 0.047 0.953 27 H 0.045 0.955 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.052 0.948 36 H 0.098 0.902 37 H 0.066 0.934 38 H 0.399 0.601 39 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.124 -19.723 -6.308 20.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.729 3.271 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.094 0.906 9 C -0.025 4.025 10 C 0.337 3.663 11 O -0.420 6.420 12 N -0.398 5.398 13 C 0.000 4.000 14 C -0.082 4.082 15 C -0.015 4.015 16 C -0.178 4.178 17 C -0.015 4.015 18 O -0.297 6.297 19 C -0.005 4.005 20 C -0.143 4.143 21 H 0.132 0.868 22 C 0.321 3.679 23 N -0.419 5.419 24 O -0.407 6.407 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.071 0.929 36 H 0.116 0.884 37 H 0.084 0.916 38 H 0.227 0.773 39 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 0.164 -19.398 -5.772 20.239 hybrid contribution 0.388 1.252 -0.215 1.328 sum 0.552 -18.146 -5.986 19.116 Atomic orbital electron populations 1.69978 1.06051 1.26820 1.51052 1.25014 0.94905 0.99483 0.95189 0.86375 0.80306 0.82956 0.77495 1.19468 1.20988 1.20963 1.21211 0.94255 0.89055 1.50212 0.90649 1.19183 0.93973 0.89958 0.99409 1.21792 0.90706 0.81063 0.72693 1.90547 1.18087 1.83323 1.50012 1.50161 1.09267 1.04046 1.76284 1.22842 0.87692 0.89283 1.00188 1.21463 0.98101 0.95835 0.92767 1.22840 0.95981 0.82936 0.99764 1.22107 1.02469 0.92715 1.00513 1.22668 0.99193 0.99106 0.80537 1.87909 1.82182 1.37832 1.21821 1.22560 0.96122 0.82815 0.98965 1.21652 0.94768 1.02236 0.95606 0.86785 1.20177 0.90910 0.74513 0.82344 1.43801 1.12450 1.78113 1.07562 1.90709 1.44592 1.48528 1.56913 0.92928 0.93539 0.93676 0.90010 0.89903 0.91120 0.90201 0.90267 0.88806 0.88717 0.92949 0.88419 0.91595 0.77299 0.76782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 22.33 29.54 -169.99 -5.02 17.31 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.51 -15.09 8.92 -34.44 -0.31 -15.39 16 8 H 0.08 2.32 6.75 -52.49 -0.35 1.97 16 9 C 0.01 0.37 5.28 -29.03 -0.15 0.22 16 10 C 0.54 13.00 8.07 -10.98 -0.09 12.91 16 11 O -0.54 -14.67 16.23 5.56 0.09 -14.58 16 12 N -0.66 -12.14 3.48 -184.97 -0.64 -12.79 16 13 C 0.12 1.92 7.00 -8.01 -0.06 1.86 16 14 C -0.08 -0.99 0.17 -154.91 -0.03 -1.02 16 15 C 0.11 1.50 7.68 -8.17 -0.06 1.44 16 16 C -0.14 -1.45 5.08 -26.76 -0.14 -1.59 16 17 C 0.06 0.55 6.83 37.32 0.25 0.80 16 18 O -0.38 -3.95 10.47 -35.23 -0.37 -4.32 16 19 C 0.07 0.65 6.17 37.32 0.23 0.88 16 20 C -0.12 -1.38 2.20 -91.80 -0.20 -1.58 16 21 H 0.11 1.41 7.95 -51.93 -0.41 1.00 16 22 C 0.54 6.64 6.70 -10.99 -0.07 6.56 16 23 N -0.86 -7.39 8.74 31.22 0.27 -7.12 16 24 O -0.53 -8.35 14.11 5.55 0.08 -8.27 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.08 1.16 8.10 -51.92 -0.42 0.74 16 29 H 0.08 1.43 7.09 -51.93 -0.37 1.07 16 30 H 0.07 0.95 7.87 -51.93 -0.41 0.54 16 31 H 0.08 0.98 8.01 -51.93 -0.42 0.57 16 32 H 0.08 0.70 8.01 -51.93 -0.42 0.29 16 33 H 0.09 1.15 6.55 -51.93 -0.34 0.81 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 0.65 7.49 -51.93 -0.39 0.26 16 37 H 0.07 0.54 7.90 -51.93 -0.41 0.13 16 38 H 0.40 2.30 8.24 -40.82 -0.34 1.96 16 39 H 0.40 3.10 8.93 -40.82 -0.36 2.74 16 LS Contribution 320.50 15.07 4.83 4.83 Total: -1.00 -36.49 320.50 -6.21 -42.70 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.46 Total: 1.76 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -0.72 Total: 6.60 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 0.37 Total: -46.03 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.20 Total: -27.17 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -36.49 -6.21 -42.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024725.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.153 kcal (2) G-P(sol) polarization free energy of solvation -36.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds