Wall clock time and date at job start Tue Mar 31 2020 02:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 11 11 O 1.21283 * 120.00011 * 0.02562 * 10 9 7 12 12 N 1.34775 * 120.00072 * 180.02562 * 10 9 7 13 13 C 1.47194 * 135.98994 * 359.63876 * 12 10 9 14 14 C 1.53136 * 87.72261 * 153.46304 * 13 12 10 15 15 C 1.47171 * 135.99095 * 179.97438 * 12 10 9 16 16 C 1.52620 * 114.10796 * 139.67481 * 14 13 12 17 17 C 1.53312 * 108.88493 * 185.74394 * 16 14 13 18 18 O 1.42897 * 109.30196 * 304.98807 * 17 16 14 19 19 C 1.42912 * 114.39439 * 63.11806 * 18 17 16 20 20 C 1.52626 * 114.45576 * 272.01361 * 14 13 12 21 21 H 1.09006 * 109.57066 * 54.48506 * 20 14 13 22 22 C 1.50696 * 109.57018 * 294.24364 * 20 14 13 23 23 N 1.34779 * 120.00449 * 179.97438 * 22 20 14 24 24 O 1.21288 * 120.00000 * 0.02562 * 22 20 14 25 25 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 27 27 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 28 28 H 1.09009 * 113.49396 * 268.14467 * 13 12 10 29 29 H 1.09001 * 113.49797 * 38.66720 * 13 12 10 30 30 H 1.08997 * 113.49539 * 321.33303 * 15 12 10 31 31 H 1.08997 * 113.48857 * 91.78640 * 15 12 10 32 32 H 1.09000 * 109.57012 * 305.56452 * 16 14 13 33 33 H 1.08998 * 109.56657 * 65.92466 * 16 14 13 34 34 H 1.08998 * 109.49609 * 185.04199 * 17 16 14 35 35 H 1.08996 * 109.52373 * 64.95292 * 17 16 14 36 36 H 1.08997 * 109.50030 * 176.93704 * 19 18 17 37 37 H 1.08994 * 109.52753 * 56.84500 * 19 18 17 38 38 H 0.97004 * 119.99633 * 359.97438 * 23 22 20 39 39 H 0.96996 * 120.00121 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2305 -3.6445 0.0104 11 8 3.4229 -3.4228 0.0097 12 7 1.7813 -4.9152 0.0156 13 6 0.4643 -5.5724 0.0245 14 6 1.1261 -6.7715 -0.6605 15 6 2.3926 -6.2539 0.0209 16 6 0.6472 -8.1261 -0.1455 17 6 1.4826 -9.2306 -0.8032 18 8 1.4122 -9.0936 -2.2238 19 6 1.9648 -7.8756 -2.7275 20 6 1.1579 -6.6905 -2.1842 21 1 1.6277 -5.7558 -2.4904 22 6 -0.2485 -6.7485 -2.7223 23 7 -0.4645 -6.6921 -4.0515 24 8 -1.1863 -6.8449 -1.9592 25 1 -0.4850 0.8400 0.0004 26 1 0.6245 -2.5529 0.8956 27 1 0.6244 -2.5609 -0.8844 28 1 0.0956 -5.7933 1.0263 29 1 -0.2767 -5.0694 -0.5969 30 1 3.2829 -6.3276 -0.6036 31 1 2.5449 -6.6580 1.0216 32 1 0.7711 -8.1699 0.9365 33 1 -0.4038 -8.2626 -0.4003 34 1 1.0911 -10.2052 -0.5118 35 1 2.5200 -9.1438 -0.4802 36 1 1.9191 -7.8783 -3.8165 37 1 3.0027 -7.7865 -2.4070 38 1 0.2855 -6.6139 -4.6618 39 1 -1.3698 -6.7291 -4.3977 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269024725.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:11 Heat of formation + Delta-G solvation = -115.461330 kcal Electronic energy + Delta-G solvation = -23197.046331 eV Core-core repulsion = 19718.539248 eV Total energy + Delta-G solvation = -3478.507083 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -42.58435 -40.33632 -39.20766 -38.35428 -35.15820 -34.78028 -33.38330 -32.18634 -31.24407 -28.59830 -27.31507 -25.57866 -25.23681 -23.83533 -22.31441 -20.27977 -19.65208 -18.64573 -17.97746 -17.83122 -17.50448 -17.35202 -17.03856 -16.65974 -16.47654 -16.09806 -15.96855 -15.40821 -15.07199 -14.80272 -14.34174 -14.10050 -13.83361 -13.54526 -13.32640 -13.20861 -13.14701 -12.80964 -12.64838 -12.60007 -12.07686 -11.81945 -11.68638 -11.48931 -11.47010 -11.00775 -10.68446 -10.60127 -10.50820 -10.30702 -9.68756 -8.29724 -6.39285 1.37399 1.37882 1.53354 1.67426 1.74391 1.96968 2.39967 2.47958 2.95474 3.04868 3.23175 3.38394 3.65629 3.87910 3.92316 4.02555 4.12627 4.40937 4.44068 4.44817 4.48828 4.57438 4.62086 4.71201 4.72900 4.78942 4.88725 5.06722 5.09213 5.12273 5.16424 5.37443 5.67837 5.94450 6.01651 6.22543 6.47307 6.66255 6.79209 7.27978 7.37358 7.38118 8.82957 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.025634 B = 0.004469 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.035469 B = 6264.461014 C = 6688.009675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.538 4.538 8 H 0.058 0.942 9 C 0.019 3.981 10 C 0.546 3.454 11 O -0.582 6.582 12 N -0.659 5.659 13 C 0.114 3.886 14 C -0.062 4.062 15 C 0.110 3.890 16 C -0.134 4.134 17 C 0.060 3.940 18 O -0.392 6.392 19 C 0.075 3.925 20 C -0.124 4.124 21 H 0.102 0.898 22 C 0.528 3.472 23 N -0.839 5.839 24 O -0.572 6.572 25 H 0.268 0.732 26 H 0.031 0.969 27 H 0.030 0.970 28 H 0.097 0.903 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.112 0.888 35 H 0.070 0.930 36 H 0.122 0.878 37 H 0.079 0.921 38 H 0.415 0.585 39 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.005 -21.054 -6.748 22.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.076 0.924 9 C -0.020 4.020 10 C 0.338 3.662 11 O -0.462 6.462 12 N -0.395 5.395 13 C -0.008 4.008 14 C -0.063 4.063 15 C -0.011 4.011 16 C -0.172 4.172 17 C -0.016 4.016 18 O -0.310 6.310 19 C -0.002 4.002 20 C -0.145 4.145 21 H 0.120 0.880 22 C 0.313 3.687 23 N -0.403 5.403 24 O -0.451 6.451 25 H 0.077 0.923 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.115 0.885 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.094 0.906 34 H 0.130 0.870 35 H 0.088 0.912 36 H 0.140 0.860 37 H 0.097 0.903 38 H 0.245 0.755 39 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 1.021 -20.791 -6.255 21.735 hybrid contribution 0.012 1.594 -0.107 1.597 sum 1.033 -19.197 -6.361 20.250 Atomic orbital electron populations 1.70067 1.07398 1.28190 1.50962 1.25884 0.95860 1.03060 0.94199 0.85318 0.78600 0.78303 0.78346 1.19653 1.19511 1.19652 1.21385 0.93705 0.90951 1.51524 0.92383 1.18946 0.94081 0.91096 0.97873 1.21011 0.89386 0.82506 0.73275 1.90508 1.18949 1.84458 1.52324 1.49969 1.11691 1.04030 1.73814 1.23135 0.86214 0.90218 1.01251 1.21378 0.96001 0.95655 0.93293 1.23179 0.96809 0.79480 1.01655 1.22081 1.01603 0.91670 1.01807 1.22817 0.99921 0.99133 0.79767 1.87906 1.82408 1.38062 1.22640 1.22702 0.95972 0.81155 1.00334 1.21707 0.94676 1.03060 0.95087 0.88019 1.20413 0.90870 0.74208 0.83175 1.43668 1.13573 1.76371 1.06696 1.90694 1.45649 1.50683 1.58086 0.92302 0.95120 0.95178 0.88460 0.92255 0.90182 0.87660 0.88403 0.90637 0.87040 0.91169 0.86036 0.90278 0.75457 0.76077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.13 13.29 21.45 0.28 -55.84 16 2 C 0.01 0.50 5.46 84.65 0.46 0.96 16 3 Si 0.97 46.10 29.54 68.60 2.03 48.13 16 4 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.54 -32.91 8.92 25.60 0.23 -32.69 16 8 H 0.06 3.70 6.75 -2.91 -0.02 3.68 16 9 C 0.02 1.08 5.28 29.10 0.15 1.23 16 10 C 0.55 26.89 8.07 87.66 0.71 27.60 16 11 O -0.58 -32.21 16.23 -3.04 -0.05 -32.26 16 12 N -0.66 -24.38 3.48 -857.50 -2.99 -27.37 16 13 C 0.11 3.57 7.00 83.43 0.58 4.15 16 14 C -0.06 -1.45 0.17 -52.44 -0.01 -1.46 16 15 C 0.11 2.84 7.68 83.34 0.64 3.48 16 16 C -0.13 -2.47 5.08 30.57 0.16 -2.31 16 17 C 0.06 0.87 6.83 72.09 0.49 1.36 16 18 O -0.39 -7.01 10.47 -148.98 -1.56 -8.56 16 19 C 0.08 1.15 6.17 72.09 0.44 1.59 16 20 C -0.12 -2.67 2.20 -11.56 -0.03 -2.70 16 21 H 0.10 2.47 7.95 -2.38 -0.02 2.46 16 22 C 0.53 12.78 6.70 87.66 0.59 13.37 16 23 N -0.84 -13.52 8.74 -173.53 -1.52 -15.04 16 24 O -0.57 -18.09 14.11 -3.05 -0.04 -18.14 16 25 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 26 H 0.03 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.03 1.73 8.14 -2.38 -0.02 1.71 16 28 H 0.10 2.73 8.10 -2.38 -0.02 2.71 16 29 H 0.06 2.15 7.09 -2.39 -0.02 2.13 16 30 H 0.08 1.96 7.87 -2.39 -0.02 1.95 16 31 H 0.11 2.25 8.01 -2.39 -0.02 2.24 16 32 H 0.10 1.44 8.01 -2.39 -0.02 1.42 16 33 H 0.08 1.76 6.55 -2.39 -0.02 1.74 16 34 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 36 H 0.12 1.24 7.49 -2.39 -0.02 1.22 16 37 H 0.08 1.03 7.90 -2.39 -0.02 1.01 16 38 H 0.41 4.03 8.24 -92.71 -0.76 3.26 16 39 H 0.41 5.88 8.93 -92.71 -0.83 5.06 16 Total: -1.00 -81.11 320.50 0.07 -81.04 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -0.50 Total: 13.44 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: 4.42 Total: 14.61 kcal Atomic # 7 Polarization: -94.03 SS G_CDS: -4.22 Total: -98.25 kcal Atomic # 8 Polarization: -57.31 SS G_CDS: -1.65 Total: -58.96 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -81.11 0.07 -81.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024725.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.426 kcal (2) G-P(sol) polarization free energy of solvation -81.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds