Wall clock time and date at job start Tue Mar 31 2020 03:24:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46495 * 1
3 3 C 1.46299 * 118.72880 * 2 1
4 4 C 1.52433 * 109.56390 * 164.07266 * 3 2 1
5 5 C 1.52874 * 114.29747 * 272.22473 * 4 3 2
6 6 N 1.47181 * 87.83658 * 220.31522 * 5 4 3
7 7 C 1.34777 * 135.99542 * 206.56293 * 6 5 4
8 8 O 1.21283 * 119.99750 * 359.97438 * 7 6 5
9 9 C 1.50702 * 119.99928 * 180.27668 * 7 6 5
10 10 C 1.52996 * 109.47159 * 179.72352 * 9 7 6
11 11 C 1.50697 * 109.47491 * 179.97438 * 10 9 7
12 12 H 1.08001 * 119.99437 * 359.97438 * 11 10 9
13 13 C 1.37869 * 120.00278 * 179.97438 * 11 10 9
14 14 N 1.31514 * 120.00194 * 359.97438 * 13 11 10
15 15 Si 1.86805 * 120.00110 * 179.97438 * 13 11 10
16 16 H 1.48502 * 109.47014 * 89.99669 * 15 13 11
17 17 H 1.48495 * 109.47331 * 209.99910 * 15 13 11
18 18 H 1.48497 * 109.46899 * 330.00049 * 15 13 11
19 19 C 1.47190 * 88.00867 * 26.81514 * 6 5 4
20 20 O 1.42557 * 112.73690 * 44.95304 * 4 3 2
21 21 C 1.43057 * 112.97534 * 296.18944 * 20 4 3
22 22 C 1.33715 * 118.73106 * 179.97438 * 2 1 3
23 23 O 1.21284 * 118.35350 * 3.29566 * 22 2 1
24 24 H 1.09001 * 109.46967 * 180.02562 * 1 2 3
25 25 H 1.09002 * 109.47291 * 299.99996 * 1 2 3
26 26 H 1.08999 * 109.47055 * 60.00124 * 1 2 3
27 27 H 1.08998 * 109.45387 * 44.04148 * 3 2 1
28 28 H 1.09002 * 109.45104 * 284.09742 * 3 2 1
29 29 H 1.08996 * 113.49076 * 105.57331 * 5 4 3
30 30 H 1.08998 * 113.54324 * 335.06381 * 5 4 3
31 31 H 1.09004 * 109.46965 * 299.72211 * 9 7 6
32 32 H 1.08994 * 109.46990 * 59.72065 * 9 7 6
33 33 H 1.09004 * 109.47066 * 299.99797 * 10 9 7
34 34 H 1.09000 * 109.47234 * 59.99288 * 10 9 7
35 35 H 0.97004 * 120.00291 * 180.02562 * 14 13 11
36 36 H 1.08998 * 113.48795 * 87.91762 * 19 6 5
37 37 H 1.08995 * 113.49227 * 218.43629 * 19 6 5
38 38 H 1.09003 * 109.34689 * 167.34922 * 21 20 4
39 39 H 1.08993 * 109.35240 * 286.90369 * 21 20 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1682 1.2829 0.0000
4 6 3.6247 1.0666 0.3942
5 6 3.8815 1.1079 1.9006
6 7 5.1161 1.8559 1.6132
7 6 6.3086 2.0272 2.2174
8 8 6.5390 1.4745 3.2721
9 6 7.3533 2.9108 1.5858
10 6 8.6007 2.9387 2.4711
11 6 9.6456 3.8219 1.8393
12 1 9.4405 4.3137 0.8999
13 6 10.8632 4.0020 2.4603
14 7 11.1128 3.4034 3.6045
15 14 12.1587 5.0961 1.6767
16 1 11.9868 6.4901 2.1589
17 1 13.5106 4.6069 2.0485
18 1 12.0085 5.0612 0.1997
19 6 4.4748 2.3399 0.3799
20 8 4.2160 -0.0469 -0.2711
21 6 3.6028 -1.2928 0.0726
22 6 2.1077 -1.1725 0.0005
23 8 1.4502 -2.1898 -0.0604
24 1 -0.3633 -1.0277 0.0005
25 1 -0.3634 0.5138 0.8900
26 1 -0.3633 0.5138 -0.8900
27 1 1.6948 1.9563 0.7145
28 1 2.1231 1.7215 -0.9969
29 1 4.0603 0.1257 2.3379
30 1 3.1413 1.6870 2.4527
31 1 7.6142 2.5192 0.6026
32 1 6.9591 3.9216 1.4813
33 1 8.3398 3.3304 3.4543
34 1 8.9948 1.9278 2.5756
35 1 11.9693 3.5304 4.0417
36 1 3.8942 3.2514 0.5211
37 1 5.1557 2.3999 -0.4690
38 1 3.9371 -2.0636 -0.6218
39 1 3.8938 -1.5714 1.0853
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001269990477.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:24:54
Heat of formation + Delta-G solvation = -61.652185 kcal
Electronic energy + Delta-G solvation = -22268.962243 eV
Core-core repulsion = 18792.788500 eV
Total energy + Delta-G solvation = -3476.173744 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 282.141 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-41.72261 -39.89462 -38.21594 -36.42174 -35.85195 -33.47722 -31.27650 -30.42294
-29.24286 -27.46682 -26.30852 -25.89751 -25.10993 -22.24344 -21.08075 -19.18246
-18.80361 -17.91125 -17.23735 -16.91293 -16.61759 -16.10387 -15.72650 -15.49882
-15.18711 -14.82298 -14.41537 -14.39380 -13.86993 -13.73745 -13.50418 -13.03842
-12.82178 -12.57273 -12.35430 -12.18001 -12.13917 -11.98695 -11.34861 -11.17456
-10.94050 -10.61771 -10.56783 -9.98507 -9.85649 -9.69530 -9.29443 -9.19283
-9.05325 -8.65101 -8.33263 -5.97282 -4.01954 2.08995 2.36256 2.85302
2.94361 3.13069 3.32647 3.38893 3.41569 3.77923 3.83121 4.22205
4.43467 4.50031 4.75210 4.81933 4.89190 4.91779 4.98052 5.10676
5.11954 5.13767 5.25470 5.33566 5.37721 5.43422 5.44338 5.81317
5.95178 6.19216 6.25461 6.43074 6.85176 6.86955 7.60462 7.72427
7.83223 7.86600 8.05081 8.35743 8.64175 9.06098 9.61697 11.13699
Molecular weight = 282.14amu
Principal moments of inertia in cm(-1)
A = 0.041508 B = 0.003096 C = 0.003065
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 674.405536 B = 9040.451381 C = 9131.792921
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.072 3.928
2 N -0.608 5.608
3 C 0.107 3.893
4 C 0.052 3.948
5 C 0.080 3.920
6 N -0.649 5.649
7 C 0.544 3.456
8 O -0.528 6.528
9 C -0.121 4.121
10 C 0.036 3.964
11 C -0.527 4.527
12 H 0.056 0.944
13 C 0.058 3.942
14 N -0.890 5.890
15 Si 0.894 3.106
16 H -0.281 1.281
17 H -0.286 1.286
18 H -0.274 1.274
19 C 0.126 3.874
20 O -0.330 6.330
21 C 0.049 3.951
22 C 0.490 3.510
23 O -0.544 6.544
24 H 0.091 0.909
25 H 0.063 0.937
26 H 0.063 0.937
27 H 0.095 0.905
28 H 0.086 0.914
29 H 0.080 0.920
30 H 0.093 0.907
31 H 0.081 0.919
32 H 0.080 0.920
33 H 0.023 0.977
34 H 0.024 0.976
35 H 0.261 0.739
36 H 0.104 0.896
37 H 0.097 0.903
38 H 0.136 0.864
39 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.482 -3.154 -9.740 24.704
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 N -0.342 5.342
3 C -0.017 4.017
4 C 0.010 3.990
5 C -0.044 4.044
6 N -0.388 5.388
7 C 0.337 3.663
8 O -0.402 6.402
9 C -0.160 4.160
10 C -0.001 4.001
11 C -0.565 4.565
12 H 0.074 0.926
13 C -0.144 4.144
14 N -0.528 5.528
15 Si 0.721 3.279
16 H -0.207 1.207
17 H -0.212 1.212
18 H -0.198 1.198
19 C 0.002 3.998
20 O -0.247 6.247
21 C -0.030 4.030
22 C 0.278 3.722
23 O -0.422 6.422
24 H 0.110 0.890
25 H 0.082 0.918
26 H 0.081 0.919
27 H 0.113 0.887
28 H 0.104 0.896
29 H 0.099 0.901
30 H 0.110 0.890
31 H 0.100 0.900
32 H 0.098 0.902
33 H 0.042 0.958
34 H 0.042 0.958
35 H 0.071 0.929
36 H 0.122 0.878
37 H 0.115 0.885
38 H 0.154 0.846
39 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -22.117 -3.966 -9.047 24.223
hybrid contribution 0.467 0.656 -0.184 0.827
sum -21.650 -3.310 -9.232 23.768
Atomic orbital electron populations
1.21791 0.78792 1.04804 1.01637 1.47356 1.07685 1.05913 1.73233
1.21885 0.90519 0.85645 1.03672 1.22772 0.91858 0.90566 0.93793
1.23411 0.87430 0.98653 0.94913 1.49785 1.12817 1.50926 1.25261
1.21330 0.80020 0.81021 0.83970 1.90696 1.78179 1.48847 1.22453
1.21840 0.95450 0.97242 1.01509 1.18928 0.88874 0.98028 0.94296
1.21193 0.99195 1.28961 1.07167 0.92552 1.25027 0.98428 0.95992
0.94945 1.69998 1.23572 1.42954 1.16300 0.86577 0.81035 0.80681
0.79575 1.20677 1.21211 1.19843 1.22834 0.93933 0.93652 0.89354
1.88159 1.57294 1.13288 1.66006 1.22822 0.87367 0.88020 1.04797
1.20944 0.91815 0.83357 0.76043 1.90735 1.66966 1.34537 1.49956
0.89003 0.91815 0.91863 0.88696 0.89569 0.90150 0.88956 0.90050
0.90200 0.95829 0.95755 0.92916 0.87825 0.88455 0.84605 0.88752
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.45 10.58 59.84 0.63 1.08 16
2 N -0.61 -4.92 3.24 -182.62 -0.59 -5.51 16
3 C 0.11 0.62 5.96 -4.44 -0.03 0.59 16
4 C 0.05 0.45 1.23 -90.92 -0.11 0.34 16
5 C 0.08 0.86 7.79 -8.17 -0.06 0.80 16
6 N -0.65 -9.18 3.69 -185.05 -0.68 -9.86 16
7 C 0.54 10.69 8.08 -10.98 -0.09 10.60 16
8 O -0.53 -12.76 16.76 5.55 0.09 -12.66 16
9 C -0.12 -2.45 5.46 -27.88 -0.15 -2.61 16
10 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16
11 C -0.53 -14.88 9.11 -34.44 -0.31 -15.19 16
12 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16
13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16
14 N -0.89 -27.41 13.29 55.43 0.74 -26.67 16
15 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16
16 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16
17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
18 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16
19 C 0.13 1.13 7.87 -8.05 -0.06 1.07 16
20 O -0.33 -3.56 10.69 -35.23 -0.38 -3.94 16
21 C 0.05 0.47 6.69 35.74 0.24 0.71 16
22 C 0.49 5.21 7.58 -11.72 -0.09 5.12 16
23 O -0.54 -7.49 16.06 5.55 0.09 -7.40 16
24 H 0.09 0.75 6.68 -51.93 -0.35 0.40 16
25 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16
26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16
27 H 0.09 0.34 7.86 -51.93 -0.41 -0.07 16
28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16
29 H 0.08 0.98 7.11 -51.93 -0.37 0.61 16
30 H 0.09 0.79 7.91 -51.93 -0.41 0.38 16
31 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16
32 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16
33 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16
34 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16
35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16
36 H 0.10 0.59 8.10 -51.93 -0.42 0.17 16
37 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16
38 H 0.14 1.14 8.14 -51.93 -0.42 0.72 16
39 H 0.09 0.89 7.25 -51.93 -0.38 0.51 16
LS Contribution 328.80 15.07 4.95 4.95
Total: -1.00 -37.72 328.80 -6.72 -44.45
By element:
Atomic # 1 Polarization: 0.84 SS G_CDS: -5.67 Total: -4.83 kcal
Atomic # 6 Polarization: 5.20 SS G_CDS: -0.25 Total: 4.95 kcal
Atomic # 7 Polarization: -41.51 SS G_CDS: -0.54 Total: -42.05 kcal
Atomic # 8 Polarization: -23.81 SS G_CDS: -0.19 Total: -24.00 kcal
Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal
Total LS contribution 4.95 Total: 4.95 kcal
Total: -37.72 -6.72 -44.45 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001269990477.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.207 kcal
(2) G-P(sol) polarization free energy of solvation -37.720 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.927 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.445 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.652 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds