Wall clock time and date at job start Tue Mar 31 2020 03:24:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46495 * 1
3 3 C 1.46299 * 118.72880 * 2 1
4 4 C 1.52433 * 109.56390 * 164.07266 * 3 2 1
5 5 C 1.52874 * 114.29747 * 272.22473 * 4 3 2
6 6 N 1.47181 * 87.83658 * 220.31522 * 5 4 3
7 7 C 1.34777 * 135.99542 * 206.56293 * 6 5 4
8 8 O 1.21283 * 119.99750 * 359.97438 * 7 6 5
9 9 C 1.50702 * 119.99928 * 180.27668 * 7 6 5
10 10 C 1.52996 * 109.47159 * 179.72352 * 9 7 6
11 11 C 1.50697 * 109.47491 * 179.97438 * 10 9 7
12 12 H 1.08001 * 119.99437 * 359.97438 * 11 10 9
13 13 C 1.37869 * 120.00278 * 179.97438 * 11 10 9
14 14 N 1.31514 * 120.00194 * 359.97438 * 13 11 10
15 15 Si 1.86805 * 120.00110 * 179.97438 * 13 11 10
16 16 H 1.48502 * 109.47014 * 89.99669 * 15 13 11
17 17 H 1.48495 * 109.47331 * 209.99910 * 15 13 11
18 18 H 1.48497 * 109.46899 * 330.00049 * 15 13 11
19 19 C 1.47190 * 88.00867 * 26.81514 * 6 5 4
20 20 O 1.42557 * 112.73690 * 44.95304 * 4 3 2
21 21 C 1.43057 * 112.97534 * 296.18944 * 20 4 3
22 22 C 1.33715 * 118.73106 * 179.97438 * 2 1 3
23 23 O 1.21284 * 118.35350 * 3.29566 * 22 2 1
24 24 H 1.09001 * 109.46967 * 180.02562 * 1 2 3
25 25 H 1.09002 * 109.47291 * 299.99996 * 1 2 3
26 26 H 1.08999 * 109.47055 * 60.00124 * 1 2 3
27 27 H 1.08998 * 109.45387 * 44.04148 * 3 2 1
28 28 H 1.09002 * 109.45104 * 284.09742 * 3 2 1
29 29 H 1.08996 * 113.49076 * 105.57331 * 5 4 3
30 30 H 1.08998 * 113.54324 * 335.06381 * 5 4 3
31 31 H 1.09004 * 109.46965 * 299.72211 * 9 7 6
32 32 H 1.08994 * 109.46990 * 59.72065 * 9 7 6
33 33 H 1.09004 * 109.47066 * 299.99797 * 10 9 7
34 34 H 1.09000 * 109.47234 * 59.99288 * 10 9 7
35 35 H 0.97004 * 120.00291 * 180.02562 * 14 13 11
36 36 H 1.08998 * 113.48795 * 87.91762 * 19 6 5
37 37 H 1.08995 * 113.49227 * 218.43629 * 19 6 5
38 38 H 1.09003 * 109.34689 * 167.34922 * 21 20 4
39 39 H 1.08993 * 109.35240 * 286.90369 * 21 20 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1682 1.2829 0.0000
4 6 3.6247 1.0666 0.3942
5 6 3.8815 1.1079 1.9006
6 7 5.1161 1.8559 1.6132
7 6 6.3086 2.0272 2.2174
8 8 6.5390 1.4745 3.2721
9 6 7.3533 2.9108 1.5858
10 6 8.6007 2.9387 2.4711
11 6 9.6456 3.8219 1.8393
12 1 9.4405 4.3137 0.8999
13 6 10.8632 4.0020 2.4603
14 7 11.1128 3.4034 3.6045
15 14 12.1587 5.0961 1.6767
16 1 11.9868 6.4901 2.1589
17 1 13.5106 4.6069 2.0485
18 1 12.0085 5.0612 0.1997
19 6 4.4748 2.3399 0.3799
20 8 4.2160 -0.0469 -0.2711
21 6 3.6028 -1.2928 0.0726
22 6 2.1077 -1.1725 0.0005
23 8 1.4502 -2.1898 -0.0604
24 1 -0.3633 -1.0277 0.0005
25 1 -0.3634 0.5138 0.8900
26 1 -0.3633 0.5138 -0.8900
27 1 1.6948 1.9563 0.7145
28 1 2.1231 1.7215 -0.9969
29 1 4.0603 0.1257 2.3379
30 1 3.1413 1.6870 2.4527
31 1 7.6142 2.5192 0.6026
32 1 6.9591 3.9216 1.4813
33 1 8.3398 3.3304 3.4543
34 1 8.9948 1.9278 2.5756
35 1 11.9693 3.5304 4.0417
36 1 3.8942 3.2514 0.5211
37 1 5.1557 2.3999 -0.4690
38 1 3.9371 -2.0636 -0.6218
39 1 3.8938 -1.5714 1.0853
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001269990477.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:24:54
Heat of formation + Delta-G solvation = -91.329027 kcal
Electronic energy + Delta-G solvation = -22270.249128 eV
Core-core repulsion = 18792.788500 eV
Total energy + Delta-G solvation = -3477.460628 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 282.141 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-42.53262 -40.88187 -39.51903 -37.40306 -36.54854 -35.57324 -33.11458 -31.52417
-29.94300 -28.69924 -27.12266 -26.96375 -26.36393 -23.63081 -22.45493 -20.13664
-19.84386 -18.79629 -18.67634 -17.93735 -17.57388 -17.28041 -16.84297 -16.65260
-16.37169 -16.30881 -15.78176 -15.31340 -14.93436 -14.48648 -14.41797 -14.25695
-14.00519 -13.87128 -13.38123 -13.29833 -13.14422 -12.98386 -12.80828 -12.77577
-12.46761 -12.16205 -11.93948 -11.65494 -11.37154 -11.30771 -10.85969 -10.57160
-10.54545 -9.85431 -9.76902 -8.17813 -6.32265 1.30590 1.42951 1.46059
1.56968 1.63149 1.73419 1.79360 2.23456 2.43512 3.01571 3.14147
3.15285 3.55597 3.62309 3.93966 4.04515 4.28423 4.30730 4.38821
4.40674 4.45121 4.50755 4.53206 4.58888 4.62609 4.67933 4.75015
4.86484 4.97543 5.11016 5.25108 5.49260 5.61075 5.71748 5.84246
6.16614 6.18308 6.61676 6.86587 6.86815 7.18909 7.38297 8.95043
Molecular weight = 282.14amu
Principal moments of inertia in cm(-1)
A = 0.041508 B = 0.003096 C = 0.003065
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 674.405536 B = 9040.451381 C = 9131.792921
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.069 3.931
2 N -0.605 5.605
3 C 0.110 3.890
4 C 0.059 3.941
5 C 0.071 3.929
6 N -0.653 5.653
7 C 0.540 3.460
8 O -0.594 6.594
9 C -0.107 4.107
10 C 0.042 3.958
11 C -0.541 4.541
12 H 0.078 0.922
13 C -0.008 4.008
14 N -0.939 5.939
15 Si 0.976 3.024
16 H -0.270 1.270
17 H -0.288 1.288
18 H -0.254 1.254
19 C 0.127 3.873
20 O -0.349 6.349
21 C 0.051 3.949
22 C 0.486 3.514
23 O -0.586 6.586
24 H 0.067 0.933
25 H 0.086 0.914
26 H 0.085 0.915
27 H 0.132 0.868
28 H 0.113 0.887
29 H 0.058 0.942
30 H 0.126 0.874
31 H 0.099 0.901
32 H 0.108 0.892
33 H -0.017 1.017
34 H -0.022 1.022
35 H 0.263 0.737
36 H 0.153 0.847
37 H 0.102 0.898
38 H 0.142 0.858
39 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.298 -0.486 -12.353 27.262
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 N -0.337 5.337
3 C -0.012 4.012
4 C 0.017 3.983
5 C -0.051 4.051
6 N -0.389 5.389
7 C 0.333 3.667
8 O -0.474 6.474
9 C -0.147 4.147
10 C 0.004 3.996
11 C -0.579 4.579
12 H 0.096 0.904
13 C -0.206 4.206
14 N -0.579 5.579
15 Si 0.799 3.201
16 H -0.195 1.195
17 H -0.213 1.213
18 H -0.178 1.178
19 C 0.006 3.994
20 O -0.267 6.267
21 C -0.028 4.028
22 C 0.274 3.726
23 O -0.467 6.467
24 H 0.085 0.915
25 H 0.105 0.895
26 H 0.104 0.896
27 H 0.150 0.850
28 H 0.131 0.869
29 H 0.076 0.924
30 H 0.144 0.856
31 H 0.117 0.883
32 H 0.126 0.874
33 H 0.001 0.999
34 H -0.003 1.003
35 H 0.071 0.929
36 H 0.171 0.829
37 H 0.121 0.879
38 H 0.160 0.840
39 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges -24.013 -1.249 -11.734 26.756
hybrid contribution 0.925 -0.193 0.618 1.129
sum -23.088 -1.442 -11.116 25.665
Atomic orbital electron populations
1.21936 0.77480 1.03949 1.03847 1.47491 1.08642 1.05941 1.71606
1.22109 0.87915 0.84899 1.06281 1.22812 0.93891 0.89848 0.91712
1.23813 0.86268 0.97802 0.97247 1.49637 1.12127 1.50491 1.26626
1.20979 0.81756 0.80669 0.83340 1.90663 1.79931 1.51494 1.25299
1.21548 0.93257 0.99421 1.00473 1.18702 0.92008 0.94948 0.93914
1.21694 0.99577 1.28817 1.07836 0.90387 1.26168 1.01392 0.97631
0.95378 1.70186 1.24395 1.44988 1.18353 0.85294 0.77070 0.78362
0.79353 1.19540 1.21350 1.17768 1.23350 0.93822 0.95358 0.86917
1.88134 1.58204 1.14064 1.66343 1.22793 0.87260 0.88031 1.04728
1.21006 0.91865 0.83765 0.75938 1.90717 1.67641 1.36100 1.52280
0.91456 0.89518 0.89619 0.85038 0.86873 0.92379 0.85648 0.88256
0.87380 0.99899 1.00312 0.92861 0.82934 0.87921 0.84006 0.89275
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.66 10.58 127.77 1.35 2.01 16
2 N -0.60 -7.95 3.24 -850.68 -2.75 -10.70 16
3 C 0.11 0.73 5.96 86.23 0.51 1.24 16
4 C 0.06 0.82 1.23 -10.99 -0.01 0.81 16
5 C 0.07 1.39 7.79 83.33 0.65 2.04 16
6 N -0.65 -17.34 3.69 -858.68 -3.17 -20.51 16
7 C 0.54 21.51 8.08 87.66 0.71 22.22 16
8 O -0.59 -30.43 16.76 -3.04 -0.05 -30.49 16
9 C -0.11 -4.35 5.46 29.85 0.16 -4.18 16
10 C 0.04 2.36 4.26 29.85 0.13 2.49 16
11 C -0.54 -30.78 9.11 25.60 0.23 -30.55 16
12 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16
13 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16
14 N -0.94 -59.96 13.29 21.44 0.28 -59.67 16
15 Si 0.98 44.10 29.54 68.60 2.03 46.13 16
16 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16
17 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16
18 H -0.25 -10.60 7.11 99.48 0.71 -9.89 16
19 C 0.13 1.72 7.87 83.41 0.66 2.38 16
20 O -0.35 -6.98 10.69 -148.98 -1.59 -8.57 16
21 C 0.05 0.97 6.69 71.07 0.48 1.45 16
22 C 0.49 9.88 7.58 87.65 0.66 10.54 16
23 O -0.59 -16.31 16.06 -3.04 -0.05 -16.36 16
24 H 0.07 1.02 6.68 -2.39 -0.02 1.00 16
25 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16
26 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16
27 H 0.13 0.03 7.86 -2.39 -0.02 0.01 16
28 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16
29 H 0.06 1.42 7.11 -2.39 -0.02 1.40 16
30 H 0.13 1.65 7.91 -2.39 -0.02 1.63 16
31 H 0.10 3.62 8.14 -2.38 -0.02 3.60 16
32 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16
33 H -0.02 -1.11 8.10 -2.38 -0.02 -1.13 16
34 H -0.02 -1.39 8.10 -2.39 -0.02 -1.41 16
35 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16
36 H 0.15 0.71 8.10 -2.39 -0.02 0.69 16
37 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16
38 H 0.14 2.44 8.14 -2.39 -0.02 2.42 16
39 H 0.09 1.77 7.25 -2.39 -0.02 1.75 16
Total: -1.00 -89.54 328.80 1.73 -87.81
By element:
Atomic # 1 Polarization: 0.90 SS G_CDS: 1.05 Total: 1.95 kcal
Atomic # 6 Polarization: 4.42 SS G_CDS: 5.99 Total: 10.41 kcal
Atomic # 7 Polarization: -85.24 SS G_CDS: -5.64 Total: -90.88 kcal
Atomic # 8 Polarization: -53.72 SS G_CDS: -1.69 Total: -55.41 kcal
Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal
Total: -89.54 1.73 -87.81 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001269990477.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -3.522 kcal
(2) G-P(sol) polarization free energy of solvation -89.541 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.063 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.734 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.807 kcal
(6) G-S(sol) free energy of system = (1) + (5) -91.329 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds