Wall clock time and date at job start Tue Mar 31 2020 02:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99699 * 2 1 4 4 H 1.48502 * 109.47291 * 269.99932 * 3 2 1 5 5 H 1.48494 * 109.47235 * 30.00406 * 3 2 1 6 6 H 1.48510 * 109.46961 * 150.00026 * 3 2 1 7 7 C 1.37875 * 120.00285 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99828 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00059 * 179.97438 * 7 2 1 10 10 N 1.46908 * 109.47163 * 179.97438 * 9 7 2 11 11 C 1.48037 * 110.99878 * 170.00098 * 10 9 7 12 12 C 1.53496 * 86.04933 * 222.71179 * 11 10 9 13 13 C 1.48048 * 110.99512 * 70.56554 * 10 9 7 14 14 C 1.52771 * 113.51084 * 269.17205 * 12 11 10 15 15 O 1.43369 * 108.26613 * 273.82848 * 14 12 11 16 16 C 1.42825 * 113.35523 * 294.39138 * 15 14 12 17 17 C 1.50282 * 110.48829 * 51.29939 * 16 15 14 18 18 O 1.21283 * 118.96794 * 161.56390 * 17 16 15 19 19 N 1.34271 * 122.05869 * 341.58721 * 17 16 15 20 20 C 1.46501 * 119.37421 * 181.98943 * 19 17 16 21 21 C 1.54029 * 113.81969 * 42.96423 * 20 19 17 22 22 O 1.44173 * 85.52233 * 223.19429 * 21 20 19 23 23 C 1.44179 * 93.33752 * 24.19266 * 22 21 20 24 24 H 0.96994 * 120.00146 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47215 * 60.00426 * 9 7 2 26 26 H 1.08999 * 109.47251 * 300.00165 * 9 7 2 27 27 H 1.09008 * 113.78112 * 108.42731 * 11 10 9 28 28 H 1.09003 * 113.78267 * 336.99093 * 11 10 9 29 29 H 1.08997 * 113.78149 * 23.01131 * 13 10 9 30 30 H 1.08996 * 113.77830 * 251.57675 * 13 10 9 31 31 H 1.09000 * 109.70181 * 33.52168 * 14 12 11 32 32 H 1.09003 * 109.70503 * 154.12934 * 14 12 11 33 33 H 1.08997 * 109.29708 * 290.98456 * 16 15 14 34 34 H 1.09001 * 109.29717 * 171.61336 * 16 15 14 35 35 H 1.08998 * 112.99699 * 174.95318 * 20 19 17 36 36 H 1.09003 * 113.86230 * 337.34355 * 21 20 19 37 37 H 1.08996 * 113.86436 * 109.04322 * 21 20 19 38 38 H 1.09001 * 113.87046 * 221.66001 * 23 22 21 39 39 H 1.09001 * 113.86755 * 89.95098 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 7 4.0013 -2.5790 -0.0010 11 6 5.4613 -2.6254 -0.2415 12 6 5.1624 -3.8052 -1.1769 13 6 3.7441 -3.2327 -1.3042 14 6 5.2120 -5.1636 -0.4796 15 8 6.5696 -5.6244 -0.4894 16 6 7.0642 -5.9007 -1.8005 17 6 6.8218 -4.7304 -2.7116 18 8 7.4579 -4.6455 -3.7407 19 7 5.9232 -3.7757 -2.4218 20 6 5.7028 -2.6836 -3.3731 21 6 5.6276 -3.1433 -4.8413 22 8 6.4559 -1.9977 -5.1243 23 6 6.9922 -1.9494 -3.7868 24 1 -0.4850 0.8400 -0.0004 25 1 3.8753 -0.6803 0.8889 26 1 3.8746 -0.6799 -0.8911 27 1 6.0433 -2.8989 0.6387 28 1 5.8505 -1.7458 -0.7542 29 1 3.6253 -2.5327 -2.1312 30 1 2.9601 -3.9891 -1.2693 31 1 4.8660 -5.0614 0.5490 32 1 4.5789 -5.8734 -1.0121 33 1 6.5567 -6.7790 -2.1993 34 1 8.1345 -6.1001 -1.7471 35 1 4.8928 -2.0174 -3.0764 36 1 6.1171 -4.0988 -5.0298 37 1 4.6282 -3.0821 -5.2719 38 1 7.0751 -0.9411 -3.3809 39 1 7.8983 -2.5403 -3.6533 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274032762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:53 Heat of formation + Delta-G solvation = -22.212799 kcal Electronic energy + Delta-G solvation = -23727.643878 eV Core-core repulsion = 20253.180355 eV Total energy + Delta-G solvation = -3474.463523 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.87859 -39.92468 -38.90134 -37.41893 -34.56183 -32.83390 -30.59646 -29.39354 -28.18078 -26.65701 -26.38750 -25.79924 -24.69599 -22.19587 -21.02413 -20.00870 -18.75665 -17.73426 -17.13446 -16.99351 -16.38063 -16.21141 -15.68403 -15.44224 -15.30132 -14.92376 -14.42910 -14.31386 -14.02884 -13.61729 -13.19818 -12.92917 -12.77858 -12.65868 -12.25985 -11.98523 -11.85842 -11.57620 -11.27408 -11.18972 -11.00888 -10.82297 -10.62123 -10.26591 -9.94094 -9.75246 -9.43999 -9.15254 -8.82916 -8.73849 -8.22445 -6.19184 -4.18980 2.20521 2.53888 3.18084 3.27125 3.27731 3.51970 3.64162 4.06708 4.15536 4.28185 4.31002 4.51941 4.59598 4.80920 4.88373 5.03628 5.07316 5.14087 5.15770 5.36122 5.45398 5.51350 5.55658 5.62818 5.79305 5.85413 5.88911 5.94748 6.07466 6.08562 6.22355 6.34922 6.56103 6.60570 7.08551 7.18835 7.52957 7.59896 7.80753 8.42807 8.87233 9.41278 10.93604 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.019548 B = 0.005858 C = 0.004938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.997780 B = 4778.254010 C = 5668.958701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.874 3.126 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.517 4.517 8 H 0.080 0.920 9 C 0.132 3.868 10 N -0.459 5.459 11 C -0.005 4.005 12 C 0.092 3.908 13 C 0.021 3.979 14 C 0.080 3.920 15 O -0.367 6.367 16 C 0.049 3.951 17 C 0.488 3.512 18 O -0.539 6.539 19 N -0.578 5.578 20 C 0.069 3.931 21 C 0.027 3.973 22 O -0.374 6.374 23 C 0.031 3.969 24 H 0.265 0.735 25 H 0.035 0.965 26 H -0.010 1.010 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.132 0.868 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.718 -10.005 -4.011 16.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.131 4.131 3 Si 0.701 3.299 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.555 4.555 8 H 0.098 0.902 9 C 0.005 3.995 10 N -0.182 5.182 11 C -0.135 4.135 12 C 0.006 3.994 13 C -0.109 4.109 14 C 0.003 3.997 15 O -0.285 6.285 16 C -0.031 4.031 17 C 0.277 3.723 18 O -0.418 6.418 19 N -0.311 5.311 20 C -0.034 4.034 21 C -0.051 4.051 22 O -0.291 6.291 23 C -0.047 4.047 24 H 0.075 0.925 25 H 0.053 0.947 26 H 0.008 0.992 27 H 0.111 0.889 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.149 0.851 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.124 0.876 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.749 -9.956 -3.996 16.662 hybrid contribution 0.272 1.595 -0.735 1.777 sum 13.021 -8.361 -4.731 16.182 Atomic orbital electron populations 1.69878 1.06147 1.27081 1.50230 1.24899 0.94744 0.98899 0.94518 0.86888 0.80418 0.84040 0.78595 1.20231 1.20921 1.19133 1.20904 0.88310 0.94879 1.51424 0.90172 1.20675 0.97868 0.85203 0.95752 1.68543 1.02873 1.19015 1.27742 1.24364 0.94409 0.96195 0.98546 1.23187 0.93984 0.98050 0.84142 1.24168 0.93624 0.98882 0.94222 1.22802 0.82801 0.90575 1.03482 1.88183 1.28673 1.86143 1.25483 1.22756 1.02906 0.94633 0.82797 1.21251 0.79135 0.84352 0.87543 1.90690 1.47649 1.77055 1.26386 1.47788 1.39147 1.24602 1.19562 1.24892 0.99906 0.89657 0.88964 1.24558 0.96122 0.92384 0.92021 1.89665 1.61579 1.46970 1.30932 1.24401 0.97412 1.00848 0.82000 0.92461 0.94704 0.99207 0.88853 0.91568 0.90307 0.88826 0.85064 0.91442 0.89345 0.85310 0.85336 0.87618 0.89339 0.89329 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.40 13.96 55.43 0.77 -25.63 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 20.63 27.47 -169.99 -4.67 15.96 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 7 C -0.52 -13.80 9.39 -34.44 -0.32 -14.12 16 8 H 0.08 2.33 8.04 -52.48 -0.42 1.91 16 9 C 0.13 2.94 3.65 -4.97 -0.02 2.92 16 10 N -0.46 -8.37 6.13 -241.79 -1.48 -9.85 16 11 C 0.00 -0.07 7.11 -2.95 -0.02 -0.09 16 12 C 0.09 1.21 1.50 -135.17 -0.20 1.01 16 13 C 0.02 0.33 6.42 -2.95 -0.02 0.31 16 14 C 0.08 0.89 5.99 37.04 0.22 1.11 16 15 O -0.37 -4.09 10.84 -35.23 -0.38 -4.47 16 16 C 0.05 0.47 6.94 35.80 0.25 0.72 16 17 C 0.49 6.13 7.09 -11.41 -0.08 6.05 16 18 O -0.54 -7.95 12.45 5.56 0.07 -7.88 16 19 N -0.58 -7.44 2.92 -162.06 -0.47 -7.91 16 20 C 0.07 0.94 3.80 -66.85 -0.25 0.69 16 21 C 0.03 0.36 8.44 37.60 0.32 0.68 16 22 O -0.37 -5.88 12.45 -35.23 -0.44 -6.32 16 23 C 0.03 0.43 8.51 37.61 0.32 0.75 16 24 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.03 0.81 7.20 -51.93 -0.37 0.43 16 26 H -0.01 -0.21 7.12 -51.93 -0.37 -0.58 16 27 H 0.09 1.30 8.09 -51.92 -0.42 0.88 16 28 H 0.07 1.01 7.49 -51.93 -0.39 0.62 16 29 H 0.08 1.32 5.38 -51.93 -0.28 1.04 16 30 H 0.09 1.44 8.09 -51.93 -0.42 1.02 16 31 H 0.13 1.47 7.97 -51.93 -0.41 1.05 16 32 H 0.07 0.65 8.13 -51.93 -0.42 0.22 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.13 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.13 1.83 5.78 -51.93 -0.30 1.53 16 36 H 0.11 1.51 5.59 -51.93 -0.29 1.22 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.09 1.35 6.32 -51.93 -0.33 1.02 16 LS Contribution 307.37 15.07 4.63 4.63 Total: -1.00 -30.80 307.37 -7.17 -37.96 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.29 Total: 1.59 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 0.09 Total: 1.92 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: -1.18 Total: -43.39 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.75 Total: -18.66 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.67 Total: 15.96 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.80 -7.17 -37.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.749 kcal (2) G-P(sol) polarization free energy of solvation -30.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds