Wall clock time and date at job start Tue Mar 31 2020 03:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.97625 * 2 1 4 4 C 1.51643 * 109.89000 * 238.65952 * 2 1 3 5 5 O 1.20759 * 126.43701 * 60.98786 * 4 2 1 6 6 C 1.51841 * 107.22027 * 240.88647 * 4 2 1 7 7 C 1.54888 * 104.54091 * 336.35467 * 6 4 2 8 8 C 1.54279 * 109.98926 * 121.27170 * 2 1 3 9 9 H 1.09006 * 110.56758 * 23.90172 * 8 2 1 10 10 C 1.52996 * 110.69674 * 261.10075 * 8 2 1 11 11 C 1.50699 * 109.47159 * 179.13895 * 10 8 2 12 12 O 1.21278 * 120.00228 * 359.97438 * 11 10 8 13 13 N 1.34781 * 120.00182 * 179.97438 * 11 10 8 14 14 C 1.46504 * 119.99913 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.46985 * 180.02562 * 14 13 11 16 16 O 1.21301 * 119.99777 * 359.97438 * 15 14 13 17 17 N 1.34771 * 120.00133 * 180.02562 * 15 14 13 18 18 C 1.37097 * 120.00011 * 180.02562 * 17 15 14 19 19 H 1.07999 * 120.00345 * 359.97438 * 18 17 15 20 20 C 1.38951 * 119.99880 * 179.97438 * 18 17 15 21 21 N 1.31415 * 120.00113 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 120.00009 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47167 * 90.00252 * 22 20 18 24 24 H 1.48501 * 109.46800 * 210.00317 * 22 20 18 25 25 H 1.48502 * 109.47051 * 330.00122 * 22 20 18 26 26 H 1.09005 * 109.46846 * 298.72861 * 1 2 3 27 27 H 1.09000 * 109.47084 * 58.72592 * 1 2 3 28 28 H 1.09002 * 109.47065 * 178.72962 * 1 2 3 29 29 H 1.09002 * 110.44167 * 217.55456 * 6 4 2 30 30 H 1.09001 * 110.44440 * 95.15572 * 6 4 2 31 31 H 1.09005 * 110.83437 * 155.77471 * 7 6 4 32 32 H 1.09003 * 110.83699 * 279.15430 * 7 6 4 33 33 H 1.09000 * 109.47137 * 299.13722 * 10 8 2 34 34 H 1.09002 * 109.47336 * 59.13856 * 10 8 2 35 35 H 0.96993 * 119.99980 * 0.02562 * 13 11 10 36 36 H 1.09000 * 109.47191 * 300.00079 * 14 13 11 37 37 H 1.08993 * 109.47301 * 59.99944 * 14 13 11 38 38 H 0.97002 * 120.00132 * 359.97438 * 17 15 14 39 39 H 0.97000 * 119.99808 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9023 1.0245 0.0000 4 6 2.0458 -0.7417 -1.2179 5 8 1.8468 -0.4502 -2.3728 6 6 2.8623 -1.9189 -0.7148 7 6 3.3052 -1.5043 0.7103 8 6 2.0573 -0.7526 1.2392 9 1 1.3114 -1.4584 1.6048 10 6 2.4502 0.2315 2.3428 11 6 2.9407 -0.5324 3.5457 12 8 2.9724 -1.7446 3.5228 13 7 3.3442 0.1315 4.6471 14 6 3.8205 -0.6112 5.8167 15 6 4.2076 0.3581 6.9037 16 8 4.0970 1.5519 6.7194 17 7 4.6777 -0.1014 8.0803 18 6 5.0294 0.7804 9.0694 19 1 4.9301 1.8433 8.9056 20 6 5.5135 0.3066 10.2826 21 7 5.8511 1.1519 11.2305 22 14 5.6845 -1.5318 10.5661 23 1 7.0353 -1.9753 10.1374 24 1 5.5007 -1.8292 12.0094 25 1 4.6533 -2.2524 9.7770 26 1 -0.3633 0.4940 0.9012 27 1 -0.3633 0.5335 -0.8783 28 1 -0.3633 -1.0274 -0.0228 29 1 3.7319 -2.0791 -1.3522 30 1 2.2488 -2.8190 -0.6761 31 1 3.5169 -2.3819 1.3212 32 1 4.1714 -0.8438 0.6704 33 1 3.2426 0.8864 1.9805 34 1 1.5830 0.8302 2.6215 35 1 3.3185 1.1009 4.6657 36 1 3.0276 -1.2655 6.1792 37 1 4.6872 -1.2106 5.5383 38 1 4.7665 -1.0560 8.2276 39 1 6.1887 0.8211 12.0776 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322532848.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:41 Heat of formation + Delta-G solvation = -151.899300 kcal Electronic energy + Delta-G solvation = -21487.590583 eV Core-core repulsion = 18007.503431 eV Total energy + Delta-G solvation = -3480.087152 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.36618 -40.70935 -39.90045 -37.64146 -36.25012 -35.21180 -33.82632 -32.44114 -31.90961 -29.34098 -26.60947 -25.62969 -25.18412 -21.97785 -21.43991 -21.04881 -20.43078 -20.05539 -18.40283 -17.48508 -16.99883 -16.97918 -16.80594 -16.55351 -16.33044 -15.78532 -15.44674 -15.22729 -14.79000 -14.75971 -14.41662 -14.29200 -13.96289 -13.90150 -13.59352 -13.28220 -13.10120 -12.95438 -12.64115 -12.44105 -12.27758 -12.00170 -11.92268 -11.61073 -11.57112 -11.51264 -10.85803 -10.63588 -10.32801 -10.31704 -10.06884 -8.45035 -6.07019 0.92030 1.31462 1.34562 1.44400 1.71672 1.82889 2.11016 2.21163 2.91926 3.11492 3.14296 3.48871 3.66276 3.82627 3.98048 4.14036 4.24605 4.28623 4.38559 4.45153 4.46484 4.53244 4.57946 4.63635 4.84799 4.91005 5.00006 5.04086 5.08877 5.25701 5.30098 5.38233 5.46464 5.50511 5.89382 6.49109 6.49445 6.61443 6.79658 7.25258 7.33782 7.79920 8.71443 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.043505 B = 0.002753 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.442786 B =10168.973238 C =10498.102054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.144 4.144 3 H 0.118 0.882 4 C 0.374 3.626 5 O -0.487 6.487 6 C -0.180 4.180 7 C -0.112 4.112 8 C -0.062 4.062 9 H 0.089 0.911 10 C -0.128 4.128 11 C 0.514 3.486 12 O -0.572 6.572 13 N -0.715 5.715 14 C 0.118 3.882 15 C 0.444 3.556 16 O -0.615 6.615 17 N -0.580 5.580 18 C -0.331 4.331 19 H 0.063 0.937 20 C -0.009 4.009 21 N -0.927 5.927 22 Si 0.959 3.041 23 H -0.257 1.257 24 H -0.275 1.275 25 H -0.232 1.232 26 H 0.082 0.918 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.413 0.587 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.392 0.608 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.846 -8.510 -20.141 23.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.163 4.163 3 H 0.136 0.864 4 C 0.252 3.748 5 O -0.363 6.363 6 C -0.217 4.217 7 C -0.150 4.150 8 C -0.081 4.081 9 H 0.107 0.893 10 C -0.168 4.168 11 C 0.302 3.698 12 O -0.451 6.451 13 N -0.370 5.370 14 C -0.010 4.010 15 C 0.232 3.768 16 O -0.501 6.501 17 N -0.220 5.220 18 C -0.460 4.460 19 H 0.081 0.919 20 C -0.209 4.209 21 N -0.567 5.567 22 Si 0.779 3.221 23 H -0.181 1.181 24 H -0.200 1.200 25 H -0.155 1.155 26 H 0.101 0.899 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.133 0.867 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.251 0.749 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.228 0.772 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.918 -8.371 -20.653 23.650 hybrid contribution 0.421 -0.138 0.946 1.044 sum -7.497 -8.509 -19.707 22.737 Atomic orbital electron populations 1.21710 0.91835 1.02786 1.03290 1.22367 0.98516 1.01866 0.93586 0.86422 1.25426 0.75305 0.85326 0.88711 1.90400 1.53487 1.69083 1.23292 1.22943 1.01543 0.98796 0.98456 1.22503 0.97367 1.01405 0.93715 1.21664 0.98118 0.96174 0.92118 0.89276 1.21774 1.04520 0.98883 0.91600 1.21201 0.76355 0.88128 0.84112 1.90664 1.56043 1.15193 1.83218 1.45854 1.65750 1.11755 1.13619 1.20842 1.01914 0.93063 0.85141 1.20625 0.82338 0.89601 0.84272 1.90531 1.59726 1.18438 1.81407 1.41955 1.58387 1.08627 1.13009 1.19026 1.42250 0.90985 0.93739 0.91886 1.26080 0.95619 1.04901 0.94314 1.69785 1.43115 1.37561 1.06218 0.85437 0.80532 0.76815 0.79276 1.18120 1.19973 1.15492 0.89897 0.92526 0.92170 0.88636 0.86741 0.90217 0.90631 0.86623 0.86310 0.74917 0.88048 0.87924 0.77245 0.90959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.08 71.98 0.65 -0.93 16 2 C -0.14 -1.78 3.02 -10.81 -0.03 -1.82 16 3 H 0.12 1.21 7.84 -2.38 -0.02 1.19 16 4 C 0.37 6.33 7.19 29.77 0.21 6.54 16 5 O -0.49 -11.89 17.99 -1.45 -0.03 -11.92 16 6 C -0.18 -2.40 6.71 30.86 0.21 -2.20 16 7 C -0.11 -1.62 5.65 31.92 0.18 -1.44 16 8 C -0.06 -0.82 2.02 -9.68 -0.02 -0.84 16 9 H 0.09 1.32 7.74 -2.38 -0.02 1.30 16 10 C -0.13 -1.74 5.07 29.85 0.15 -1.59 16 11 C 0.51 11.49 7.62 87.66 0.67 12.16 16 12 O -0.57 -15.75 14.54 -3.02 -0.04 -15.79 16 13 N -0.72 -18.60 5.53 -466.78 -2.58 -21.18 16 14 C 0.12 3.51 6.15 85.63 0.53 4.04 16 15 C 0.44 18.41 7.85 87.66 0.69 19.09 16 16 O -0.62 -30.41 15.24 -3.09 -0.05 -30.46 16 17 N -0.58 -25.78 5.09 -306.98 -1.56 -27.34 16 18 C -0.33 -18.41 10.16 84.04 0.85 -17.56 16 19 H 0.06 4.16 7.39 -2.91 -0.02 4.13 16 20 C -0.01 -0.49 5.50 84.93 0.47 -0.03 16 21 N -0.93 -53.84 13.96 21.66 0.30 -53.54 16 22 Si 0.96 37.26 27.74 68.60 1.90 39.16 16 23 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 24 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 25 H -0.23 -7.59 6.52 99.48 0.65 -6.94 16 26 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.08 1.43 7.11 -2.38 -0.02 1.41 16 32 H 0.08 1.03 8.03 -2.39 -0.02 1.01 16 33 H 0.12 1.20 8.10 -2.39 -0.02 1.18 16 34 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.41 10.87 7.44 -92.71 -0.69 10.18 16 36 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 37 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 38 H 0.39 14.53 5.76 -92.71 -0.53 14.00 16 39 H 0.28 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -73.93 329.70 2.30 -71.63 By element: Atomic # 1 Polarization: 34.20 SS G_CDS: -0.20 Total: 34.00 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: 4.56 Total: 15.43 kcal Atomic # 7 Polarization: -98.21 SS G_CDS: -3.84 Total: -102.05 kcal Atomic # 8 Polarization: -58.05 SS G_CDS: -0.12 Total: -58.17 kcal Atomic # 14 Polarization: 37.26 SS G_CDS: 1.90 Total: 39.16 kcal Total: -73.93 2.30 -71.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322532848.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.273 kcal (2) G-P(sol) polarization free energy of solvation -73.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds