Wall clock time and date at job start Tue Mar 31 2020 03:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.48304 * 2 1 4 4 C 1.53233 * 109.49361 * 120.03426 * 2 1 3 5 5 C 1.51275 * 108.53380 * 65.35656 * 4 2 1 6 6 O 1.20751 * 120.84923 * 231.36445 * 5 4 2 7 7 C 1.51273 * 118.29639 * 51.35096 * 5 4 2 8 8 C 1.53229 * 108.53606 * 308.64663 * 7 5 4 9 9 C 1.52958 * 109.40567 * 54.63252 * 8 7 5 10 10 H 1.09000 * 109.35306 * 56.47056 * 9 8 7 11 11 C 1.50689 * 109.41280 * 176.29251 * 9 8 7 12 12 O 1.21282 * 119.99920 * 120.35389 * 11 9 8 13 13 N 1.34773 * 120.00382 * 300.35046 * 11 9 8 14 14 C 1.46498 * 120.00255 * 180.02562 * 13 11 9 15 15 C 1.50709 * 109.47322 * 180.02562 * 14 13 11 16 16 O 1.21294 * 119.99448 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00029 * 180.02562 * 15 14 13 18 18 C 1.37092 * 119.99650 * 180.02562 * 17 15 14 19 19 H 1.08006 * 120.00578 * 359.97438 * 18 17 15 20 20 C 1.38947 * 120.00010 * 180.02562 * 18 17 15 21 21 N 1.31409 * 120.00293 * 179.97438 * 20 18 17 22 22 Si 1.86810 * 119.99821 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46775 * 89.99913 * 22 20 18 24 24 H 1.48505 * 109.46819 * 209.99949 * 22 20 18 25 25 H 1.48498 * 109.46678 * 330.00009 * 22 20 18 26 26 H 1.09001 * 109.47130 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46995 * 300.00031 * 1 2 3 28 28 H 1.09001 * 109.47282 * 59.99778 * 1 2 3 29 29 H 1.09001 * 109.62318 * 185.07139 * 4 2 1 30 30 H 1.08998 * 109.62324 * 305.64509 * 4 2 1 31 31 H 1.09002 * 109.62109 * 188.93339 * 7 5 4 32 32 H 1.09002 * 109.78395 * 68.46266 * 7 5 4 33 33 H 1.09002 * 109.48152 * 294.64956 * 8 7 5 34 34 H 1.09001 * 109.48733 * 174.61524 * 8 7 5 35 35 H 0.97000 * 119.99787 * 0.02562 * 13 11 9 36 36 H 1.08998 * 109.47456 * 300.00156 * 14 13 11 37 37 H 1.08998 * 109.47182 * 60.00347 * 14 13 11 38 38 H 0.96998 * 119.99959 * 0.02562 * 17 15 14 39 39 H 0.96998 * 120.00337 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0414 -0.7230 1.2505 5 6 1.6380 -2.1784 1.1632 6 8 1.0648 -2.7180 2.0788 7 6 1.9710 -2.9402 -0.1005 8 6 1.4622 -2.1368 -1.3020 9 6 2.0401 -0.7215 -1.2485 10 1 3.1282 -0.7767 -1.2160 11 6 1.6138 0.0403 -2.4767 12 8 0.9660 1.0594 -2.3637 13 7 1.9522 -0.4107 -3.7008 14 6 1.5382 0.3303 -4.8948 15 6 2.0396 -0.3800 -6.1259 16 8 2.6794 -1.4046 -6.0165 17 7 1.7770 0.1234 -7.3483 18 6 2.2327 -0.5230 -8.4681 19 1 2.8024 -1.4354 -8.3708 20 6 1.9625 -0.0038 -9.7282 21 7 2.3997 -0.6231 -10.8016 22 14 0.9777 1.5747 -9.8966 23 1 1.9013 2.7375 -9.8884 24 1 0.2213 1.5522 -11.1744 25 1 0.0278 1.6889 -8.7609 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 3.1276 -0.6463 1.2993 30 1 1.5995 -0.2733 2.1397 31 1 1.4840 -3.9151 -0.0793 32 1 3.0503 -3.0718 -0.1785 33 1 0.3738 -2.0864 -1.2710 34 1 1.7776 -2.6236 -2.2249 35 1 2.4700 -1.2260 -3.7912 36 1 0.4502 0.3886 -4.9273 37 1 1.9551 1.3368 -4.8606 38 1 1.2657 0.9430 -7.4357 39 1 2.2114 -0.2605 -11.6814 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323751051.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:20 Heat of formation + Delta-G solvation = -124.289158 kcal Electronic energy + Delta-G solvation = -22103.797495 eV Core-core repulsion = 18624.907608 eV Total energy + Delta-G solvation = -3478.889886 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -40.92794 -39.48622 -38.45019 -36.65795 -34.66644 -33.89411 -32.29260 -31.85064 -30.00518 -28.14496 -26.98229 -24.38659 -23.40470 -21.90345 -20.23706 -19.71496 -18.93361 -18.44853 -17.37323 -16.48489 -15.83649 -15.67443 -15.53536 -15.39541 -15.03394 -14.84363 -14.42868 -14.28182 -13.92064 -13.70024 -13.23979 -12.96862 -12.71685 -12.53228 -12.23506 -12.22030 -12.13047 -11.88422 -11.84212 -11.30227 -11.22639 -11.06721 -10.77916 -10.68700 -10.11126 -9.74931 -9.69049 -9.63847 -8.95401 -8.83451 -8.35677 -6.45494 -3.98380 1.67936 2.63233 2.95474 3.00186 3.08382 3.17665 3.50291 3.80730 3.99134 4.21729 4.35722 4.45979 4.54295 4.64644 4.83443 4.93061 4.97082 5.07178 5.09393 5.26353 5.31715 5.42379 5.51808 5.57155 5.61416 5.70640 5.72549 5.74403 5.79436 5.89176 6.06147 6.24154 6.51523 7.20947 7.38752 7.64152 7.95016 8.27199 8.40447 8.76663 9.24644 9.57612 10.66583 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.038395 B = 0.003233 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.095195 B = 8658.072395 C = 9148.525966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.063 4.063 3 H 0.092 0.908 4 C -0.167 4.167 5 C 0.364 3.636 6 O -0.461 6.461 7 C -0.168 4.168 8 C -0.112 4.112 9 C -0.108 4.108 10 H 0.105 0.895 11 C 0.518 3.482 12 O -0.543 6.543 13 N -0.706 5.706 14 C 0.105 3.895 15 C 0.436 3.564 16 O -0.580 6.580 17 N -0.575 5.575 18 C -0.311 4.311 19 H 0.122 0.878 20 C 0.046 3.954 21 N -0.873 5.873 22 Si 0.879 3.121 23 H -0.268 1.268 24 H -0.274 1.274 25 H -0.267 1.267 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.412 0.588 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.374 0.626 39 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.244 1.743 19.543 19.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.081 4.081 3 H 0.110 0.890 4 C -0.205 4.205 5 C 0.239 3.761 6 O -0.334 6.334 7 C -0.206 4.206 8 C -0.150 4.150 9 C -0.129 4.129 10 H 0.123 0.877 11 C 0.304 3.696 12 O -0.421 6.421 13 N -0.360 5.360 14 C -0.022 4.022 15 C 0.222 3.778 16 O -0.464 6.464 17 N -0.213 5.213 18 C -0.440 4.440 19 H 0.139 0.861 20 C -0.159 4.159 21 N -0.512 5.512 22 Si 0.705 3.295 23 H -0.194 1.194 24 H -0.199 1.199 25 H -0.192 1.192 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.118 0.882 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.121 0.879 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.250 0.750 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.208 0.792 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.566 1.479 19.884 20.001 hybrid contribution -0.395 0.892 -0.610 1.151 sum -1.961 2.371 19.274 19.518 Atomic orbital electron populations 1.22123 0.94280 1.01722 1.03764 1.20845 0.97073 0.99666 0.90558 0.89014 1.22433 1.03347 0.94316 1.00376 1.24900 0.73894 0.90389 0.86888 1.90409 1.31560 1.71678 1.39773 1.22311 1.04064 1.00211 0.94031 1.21616 1.02091 0.92968 0.98315 1.21412 1.02625 0.95586 0.93277 0.87707 1.20394 0.79655 0.85322 0.84279 1.90652 1.39616 1.25192 1.86656 1.45742 1.56274 1.29376 1.04635 1.20983 1.00694 0.95939 0.84624 1.19640 0.86290 0.87698 0.84125 1.90538 1.44316 1.25809 1.85750 1.42128 1.49012 1.24314 1.05813 1.19440 1.32810 1.09705 0.82023 0.86061 1.25070 0.97491 0.98237 0.95056 1.69613 1.44296 1.39145 0.98149 0.86674 0.80516 0.83458 0.78857 1.19369 1.19944 1.19234 0.93212 0.92647 0.89660 0.88178 0.88980 0.88888 0.87884 0.90218 0.89527 0.74969 0.89732 0.89703 0.79239 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 8.31 37.16 0.31 -1.33 16 2 C -0.06 -0.55 2.33 -90.52 -0.21 -0.76 16 3 H 0.09 0.84 8.00 -51.93 -0.42 0.42 16 4 C -0.17 -1.24 5.65 -27.48 -0.16 -1.39 16 5 C 0.36 3.36 5.75 -28.47 -0.16 3.20 16 6 O -0.46 -5.94 17.89 6.01 0.11 -5.83 16 7 C -0.17 -1.24 6.17 -27.48 -0.17 -1.41 16 8 C -0.11 -0.93 4.88 -26.63 -0.13 -1.06 16 9 C -0.11 -0.97 2.20 -91.82 -0.20 -1.17 16 10 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 11 C 0.52 6.61 6.87 -10.99 -0.08 6.54 16 12 O -0.54 -8.40 13.88 5.56 0.08 -8.33 16 13 N -0.71 -9.90 5.40 -61.48 -0.33 -10.23 16 14 C 0.11 1.69 6.15 -5.19 -0.03 1.65 16 15 C 0.44 9.12 7.85 -10.98 -0.09 9.04 16 16 O -0.58 -13.95 15.24 5.54 0.08 -13.86 16 17 N -0.58 -12.91 5.09 -10.96 -0.06 -12.97 16 18 C -0.31 -8.37 10.16 -14.94 -0.15 -8.52 16 19 H 0.12 3.72 7.39 -52.48 -0.39 3.33 16 20 C 0.05 1.20 5.50 -17.47 -0.10 1.11 16 21 N -0.87 -24.52 13.96 55.50 0.77 -23.74 16 22 Si 0.88 18.57 27.74 -169.99 -4.71 13.85 16 23 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 25 H -0.27 -5.14 6.52 56.52 0.37 -4.78 16 26 H 0.05 0.50 5.61 -51.93 -0.29 0.21 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.08 1.05 5.83 -51.93 -0.30 0.74 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.73 6.20 -51.93 -0.32 0.41 16 34 H 0.09 0.70 7.43 -51.93 -0.39 0.32 16 35 H 0.41 5.67 6.78 -40.82 -0.28 5.39 16 36 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.37 7.41 5.76 -40.82 -0.24 7.17 16 39 H 0.28 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 318.17 15.07 4.79 4.79 Total: -1.00 -32.53 318.17 -5.59 -38.12 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -5.17 Total: 12.30 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -1.16 Total: 5.90 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.39 Total: -46.94 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: 0.27 Total: -28.02 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -4.71 Total: 13.85 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.53 -5.59 -38.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323751051.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.169 kcal (2) G-P(sol) polarization free energy of solvation -32.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds